Wall clock time and date at job start Mon Mar 30 2020 17:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46505 * 109.47401 * 2 1 4 4 C 1.34946 * 126.03799 * 124.97203 * 3 2 1 5 5 C 1.35316 * 107.74228 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03382 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47006 * 269.96842 * 6 5 4 8 8 O 1.21293 * 120.00288 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00235 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99527 * 0.02562 * 9 7 6 11 11 C 1.37093 * 120.00006 * 180.02562 * 9 7 6 12 12 H 1.07997 * 120.00782 * 22.40608 * 11 9 7 13 13 C 1.38956 * 119.99632 * 202.40700 * 11 9 7 14 14 N 1.31408 * 120.00106 * 11.59172 * 13 11 9 15 15 Si 1.86793 * 119.99862 * 191.59403 * 13 11 9 16 16 H 1.48496 * 109.47487 * 59.99802 * 15 13 11 17 17 H 1.48507 * 109.47085 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47169 * 299.99803 * 15 13 11 19 19 C 1.39868 * 107.92352 * 0.02562 * 5 4 3 20 20 N 1.30839 * 108.19958 * 359.97438 * 19 5 4 21 21 H 1.08998 * 109.47263 * 60.00367 * 1 2 3 22 22 H 1.09000 * 109.47350 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47285 * 300.00078 * 1 2 3 24 24 H 1.08999 * 109.47285 * 239.99922 * 2 1 3 25 25 H 1.08999 * 109.47032 * 120.00133 * 2 1 3 26 26 H 1.08000 * 126.12967 * 0.02562 * 4 3 2 27 27 H 1.08997 * 109.47551 * 29.96921 * 6 5 4 28 28 H 1.09004 * 109.46885 * 149.97774 * 6 5 4 29 29 H 1.09005 * 109.46764 * 92.16196 * 10 9 7 30 30 H 1.08998 * 109.46784 * 212.15878 * 10 9 7 31 31 H 1.09001 * 109.47446 * 332.16148 * 10 9 7 32 32 H 0.97004 * 120.00738 * 179.97438 * 14 13 11 33 33 H 1.08000 * 125.89572 * 180.26498 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8727 1.9212 0.8942 5 6 3.0719 3.2135 0.5458 6 6 3.9555 4.1996 1.2654 7 6 3.1525 4.9176 2.3193 8 8 1.9784 4.6542 2.4715 9 7 3.7391 5.8526 3.0929 10 6 5.1571 6.1712 2.9088 11 6 3.0087 6.5053 4.0520 12 1 2.1078 6.0565 4.4435 13 6 3.4275 7.7447 4.5205 14 7 4.3830 8.3949 3.8951 15 14 2.6324 8.4864 6.0393 16 1 2.8338 7.5785 7.1970 17 1 3.2536 9.8037 6.3300 18 1 1.1782 8.6666 5.7988 19 6 2.3129 3.4722 -0.6002 20 7 1.6811 2.3745 -0.9284 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 3.3183 1.4128 1.7364 27 1 4.7827 3.6694 1.7374 28 1 4.3481 4.9239 0.5517 29 1 5.2552 7.0000 2.2077 30 1 5.5937 6.4524 3.8671 31 1 5.6775 5.2983 2.5146 32 1 4.6752 9.2602 4.2219 33 1 2.2613 4.4141 -1.1262 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548360377.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:31 Heat of formation + Delta-G solvation = 27.150186 kcal Electronic energy + Delta-G solvation = -16529.419376 eV Core-core repulsion = 13784.572485 eV Total energy + Delta-G solvation = -2744.846892 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.08688 -40.08140 -36.58930 -35.40842 -33.67961 -32.56637 -31.01185 -28.58963 -27.52084 -25.89482 -24.58174 -21.80431 -21.48985 -20.19721 -18.79320 -17.82293 -17.68676 -16.54787 -16.15427 -16.00275 -15.86457 -15.20017 -14.85800 -14.18234 -14.08796 -13.95379 -13.50560 -13.28718 -13.07868 -12.99539 -12.95428 -12.63363 -12.48813 -12.31189 -12.19581 -12.10024 -11.38666 -10.96143 -10.30105 -10.24332 -9.60169 -9.19108 -8.26130 -5.91324 1.02870 1.41051 1.41794 1.52187 1.73835 1.89132 2.16037 2.33763 3.16042 3.31977 3.63573 4.03306 4.11474 4.19346 4.29461 4.38398 4.40156 4.56305 4.72739 4.79606 4.81013 4.93042 5.02528 5.13104 5.23231 5.31843 5.49251 5.49296 5.76108 6.17047 6.25918 6.58321 6.80483 7.26187 7.58891 8.16881 8.74720 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.044317 B = 0.005373 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.666039 B = 5210.234151 C = 5546.086427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.123 3.877 3 N -0.376 5.376 4 C 0.062 3.938 5 C -0.227 4.227 6 C -0.038 4.038 7 C 0.441 3.559 8 O -0.631 6.631 9 N -0.470 5.470 10 C 0.123 3.877 11 C -0.342 4.342 12 H 0.066 0.934 13 C -0.003 4.003 14 N -0.899 5.899 15 Si 0.986 3.014 16 H -0.267 1.267 17 H -0.270 1.270 18 H -0.280 1.280 19 C 0.043 3.957 20 N -0.328 5.328 21 H 0.049 0.951 22 H 0.105 0.895 23 H 0.040 0.960 24 H 0.099 0.901 25 H 0.123 0.877 26 H 0.198 0.802 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.272 0.728 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.361 -13.618 -5.548 14.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.004 3.996 3 N -0.160 5.160 4 C -0.084 4.084 5 C -0.239 4.239 6 C -0.079 4.079 7 C 0.231 3.769 8 O -0.518 6.518 9 N -0.190 5.190 10 C -0.020 4.020 11 C -0.470 4.470 12 H 0.084 0.916 13 C -0.205 4.205 14 N -0.538 5.538 15 Si 0.810 3.190 16 H -0.192 1.192 17 H -0.194 1.194 18 H -0.206 1.206 19 C -0.142 4.142 20 N -0.150 5.150 21 H 0.068 0.932 22 H 0.124 0.876 23 H 0.059 0.941 24 H 0.117 0.883 25 H 0.141 0.859 26 H 0.215 0.785 27 H 0.130 0.870 28 H 0.119 0.881 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.063 -14.266 -6.274 15.621 hybrid contribution 0.018 1.325 1.324 1.873 sum 1.080 -12.942 -4.950 13.898 Atomic orbital electron populations 1.22023 0.94204 1.03946 1.01688 1.22036 0.95897 0.76014 1.05700 1.48896 1.35354 1.10934 1.20783 1.22659 0.95147 0.94737 0.95878 1.19729 1.08524 0.95093 1.00565 1.19777 0.96480 0.96473 0.95205 1.21226 0.87895 0.83717 0.84024 1.90473 1.19226 1.69410 1.72729 1.43900 1.09928 1.34302 1.30890 1.21447 0.80337 0.98749 1.01494 1.19531 1.09258 1.01623 1.16589 0.91556 1.26016 0.97541 0.95460 1.01451 1.70064 1.29794 1.14460 1.39478 0.85117 0.78009 0.77673 0.78236 1.19246 1.19420 1.20594 1.23929 0.95536 0.97599 0.97128 1.77110 1.24335 0.97843 1.15743 0.93175 0.87644 0.94096 0.88290 0.85887 0.78546 0.86983 0.88061 0.93769 0.93215 0.90777 0.91873 0.79858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 10.10 71.98 0.73 -2.37 16 2 C 0.12 2.28 7.23 86.38 0.62 2.91 16 3 N -0.38 -10.98 3.68 -348.07 -1.28 -12.26 16 4 C 0.06 1.88 11.36 83.54 0.95 2.83 16 5 C -0.23 -7.98 4.59 -20.14 -0.09 -8.07 16 6 C -0.04 -1.36 4.71 29.10 0.14 -1.22 16 7 C 0.44 21.78 7.62 87.66 0.67 22.45 16 8 O -0.63 -36.84 15.73 -3.07 -0.05 -36.89 16 9 N -0.47 -24.54 3.02 -658.87 -1.99 -26.53 16 10 C 0.12 5.35 8.52 127.77 1.09 6.44 16 11 C -0.34 -19.87 9.29 84.04 0.78 -19.08 16 12 H 0.07 4.14 7.41 -2.91 -0.02 4.12 16 13 C 0.00 -0.19 5.11 84.93 0.43 0.25 16 14 N -0.90 -48.30 10.62 21.66 0.23 -48.07 16 15 Si 0.99 43.38 29.57 68.60 2.03 45.41 16 16 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 C 0.04 1.54 11.96 85.24 1.02 2.56 16 20 N -0.33 -11.47 12.42 -57.02 -0.71 -12.18 16 21 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.12 1.52 8.07 -2.39 -0.02 1.50 16 26 H 0.20 4.50 8.06 -2.91 -0.02 4.47 16 27 H 0.11 3.21 7.41 -2.39 -0.02 3.19 16 28 H 0.10 3.24 8.11 -2.38 -0.02 3.22 16 29 H 0.04 2.01 7.54 -2.38 -0.02 1.99 16 30 H 0.05 2.30 7.06 -2.39 -0.02 2.28 16 31 H 0.07 2.47 6.36 -2.39 -0.02 2.45 16 32 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 33 H 0.18 5.90 8.06 -2.91 -0.02 5.88 16 Total: -1.00 -75.61 285.78 5.67 -69.94 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 1.10 Total: 13.90 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 6.34 Total: 6.68 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -3.75 Total: -99.03 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.05 Total: -36.89 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -75.61 5.67 -69.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548360377.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.093 kcal (2) G-P(sol) polarization free energy of solvation -75.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds