Wall clock time and date at job start Mon Mar 30 2020 17:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.47229 * 2 1 4 4 C 1.36913 * 119.99692 * 96.72136 * 3 2 1 5 5 H 1.07999 * 119.99706 * 165.19600 * 4 3 2 6 6 C 1.39016 * 120.00158 * 345.19653 * 4 3 2 7 7 N 1.31380 * 120.00186 * 340.97396 * 6 4 3 8 8 Si 1.86805 * 119.99991 * 160.97305 * 6 4 3 9 9 H 1.48495 * 109.46920 * 89.99853 * 8 6 4 10 10 H 1.48499 * 109.47170 * 210.00375 * 8 6 4 11 11 H 1.48505 * 109.46911 * 330.00075 * 8 6 4 12 12 C 1.34779 * 119.99899 * 276.72232 * 3 2 1 13 13 O 1.21604 * 119.99675 * 186.38425 * 12 3 2 14 14 C 1.47601 * 120.00111 * 6.38878 * 12 3 2 15 15 C 1.41549 * 126.52302 * 184.38047 * 14 12 3 16 16 C 1.35347 * 105.49957 * 180.11153 * 15 14 12 17 17 N 1.35053 * 107.24672 * 359.60339 * 16 15 14 18 18 C 1.46494 * 124.88339 * 180.22385 * 17 16 15 19 19 C 1.53002 * 109.47048 * 124.99838 * 18 17 16 20 20 N 1.28470 * 110.23681 * 0.26464 * 17 16 15 21 21 H 1.08991 * 109.46920 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46886 * 300.00021 * 1 2 3 23 23 H 1.09004 * 109.46896 * 59.99765 * 1 2 3 24 24 H 1.09001 * 109.47262 * 240.00353 * 2 1 3 25 25 H 1.09001 * 109.47359 * 120.00022 * 2 1 3 26 26 H 0.97001 * 120.00102 * 180.02562 * 7 6 4 27 27 H 1.07998 * 127.25116 * 359.97438 * 15 14 12 28 28 H 1.08000 * 126.37744 * 179.86266 * 16 15 14 29 29 H 1.08993 * 109.47511 * 245.00350 * 18 17 16 30 30 H 1.08999 * 109.46842 * 5.00516 * 18 17 16 31 31 H 1.09008 * 109.46824 * 60.00452 * 19 18 17 32 32 H 1.08994 * 109.47396 * 179.97438 * 19 18 17 33 33 H 1.08993 * 109.47384 * 300.00591 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3774 1.9804 1.1776 5 1 2.9539 2.8935 1.1650 6 6 1.9999 1.4133 2.3894 7 7 1.0134 0.5464 2.4300 8 14 2.8951 1.8838 3.9600 9 1 2.2229 3.0529 4.5815 10 1 2.8714 0.7387 4.9053 11 1 4.3027 2.2336 3.6415 12 6 2.1142 2.0621 -1.1592 13 8 2.6270 3.1647 -1.1761 14 6 1.5967 1.4697 -2.4081 15 6 1.7015 2.0197 -3.7081 16 6 1.0855 1.1346 -4.5261 17 7 0.6490 0.1145 -3.7561 18 6 -0.0698 -1.0616 -4.2523 19 6 0.6649 -2.3304 -3.8148 20 7 0.9541 0.3242 -2.5259 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.7498 0.1510 3.2756 27 1 2.1719 2.9507 -3.9881 28 1 0.9687 1.2251 -5.5959 29 1 -1.0807 -1.0682 -3.8448 30 1 -0.1169 -1.0261 -5.3407 31 1 0.7121 -2.3659 -2.7263 32 1 0.1299 -3.2055 -4.1835 33 1 1.6758 -2.3237 -4.2223 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565000398.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:44 Heat of formation + Delta-G solvation = 48.788169 kcal Electronic energy + Delta-G solvation = -17383.675572 eV Core-core repulsion = 14639.766974 eV Total energy + Delta-G solvation = -2743.908598 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.40290 -40.12745 -37.03237 -35.30857 -33.80558 -31.62665 -31.07897 -30.62598 -27.33690 -25.19658 -23.89881 -22.92734 -21.92945 -20.54274 -18.80330 -18.14956 -17.66068 -16.88975 -16.40689 -15.88464 -15.55114 -15.16254 -14.71427 -14.55602 -14.31926 -13.91657 -13.67803 -13.21495 -13.01661 -12.92948 -12.80873 -12.62099 -12.18261 -12.13250 -12.07362 -11.67089 -11.31940 -10.87427 -10.57370 -9.92535 -9.85591 -9.62147 -8.29454 -5.89044 0.83914 1.34861 1.42327 1.48096 1.56710 1.81590 2.29579 2.56946 3.11024 3.18694 3.60624 4.07447 4.11156 4.15136 4.39084 4.44266 4.65607 4.84864 4.91259 4.92312 4.96475 4.99491 5.08513 5.23034 5.31527 5.40116 5.50910 5.57575 5.97508 6.06402 6.22284 6.54130 7.09846 7.22845 7.46784 8.04948 8.65171 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.035661 B = 0.007922 C = 0.006759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.973240 B = 3533.547742 C = 4141.695304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.144 3.856 3 N -0.434 5.434 4 C -0.353 4.353 5 H 0.075 0.925 6 C 0.002 3.998 7 N -0.867 5.867 8 Si 0.992 3.008 9 H -0.273 1.273 10 H -0.263 1.263 11 H -0.274 1.274 12 C 0.496 3.504 13 O -0.639 6.639 14 C -0.031 4.031 15 C -0.222 4.222 16 C 0.003 3.997 17 N -0.290 5.290 18 C 0.110 3.890 19 C -0.164 4.164 20 N -0.266 5.266 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.030 0.970 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.275 0.725 27 H 0.151 0.849 28 H 0.231 0.769 29 H 0.097 0.903 30 H 0.145 0.855 31 H 0.044 0.956 32 H 0.107 0.893 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.492 -9.020 -12.888 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.021 3.979 3 N -0.150 5.150 4 C -0.481 4.481 5 H 0.093 0.907 6 C -0.201 4.201 7 N -0.505 5.505 8 Si 0.815 3.185 9 H -0.199 1.199 10 H -0.187 1.187 11 H -0.199 1.199 12 C 0.285 3.715 13 O -0.527 6.527 14 C -0.189 4.189 15 C -0.250 4.250 16 C -0.140 4.140 17 N -0.079 5.079 18 C -0.008 4.008 19 C -0.222 4.222 20 N -0.103 5.103 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.049 0.951 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.168 0.832 28 H 0.247 0.753 29 H 0.115 0.885 30 H 0.163 0.837 31 H 0.063 0.937 32 H 0.126 0.874 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.838 -9.697 -12.150 16.280 hybrid contribution 0.736 1.184 0.554 1.500 sum -4.101 -8.513 -11.596 14.959 Atomic orbital electron populations 1.21812 0.95318 1.00130 1.00214 1.21326 0.95818 0.81250 0.99492 1.43920 1.53662 1.12375 1.05072 1.19716 1.34026 1.10607 0.83736 0.90725 1.26090 0.95750 0.96682 1.01617 1.70194 1.23302 1.29104 1.27860 0.84978 0.78459 0.78286 0.76769 1.19879 1.18728 1.19939 1.17438 0.85433 0.85191 0.83448 1.90508 1.52193 1.23214 1.86809 1.22014 1.06086 0.95285 0.95509 1.21900 1.08576 1.03582 0.90988 1.23362 1.01488 0.88932 1.00262 1.46319 1.40031 1.18072 1.03471 1.22391 0.95546 0.80616 1.02242 1.22049 1.01074 0.97027 1.02003 1.73896 1.16552 1.17524 1.02282 0.92935 0.92258 0.95069 0.92486 0.91285 0.91471 0.83165 0.75274 0.88522 0.83725 0.93650 0.87407 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 9.03 71.98 0.65 -4.83 16 2 C 0.14 7.30 4.87 86.38 0.42 7.72 16 3 N -0.43 -25.32 2.64 -639.05 -1.68 -27.00 16 4 C -0.35 -21.53 9.41 84.09 0.79 -20.74 16 5 H 0.07 4.85 7.30 -2.91 -0.02 4.83 16 6 C 0.00 0.10 4.97 84.95 0.42 0.53 16 7 N -0.87 -46.26 8.31 21.67 0.18 -46.08 16 8 Si 0.99 43.48 29.59 68.60 2.03 45.51 16 9 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 C 0.50 28.87 7.57 86.71 0.66 29.52 16 13 O -0.64 -41.26 16.55 -4.04 -0.07 -41.33 16 14 C -0.03 -1.45 6.52 42.43 0.28 -1.17 16 15 C -0.22 -8.35 10.81 22.42 0.24 -8.11 16 16 C 0.00 0.07 11.40 83.53 0.95 1.02 16 17 N -0.29 -8.16 3.41 -347.97 -1.19 -9.35 16 18 C 0.11 1.78 7.12 86.38 0.61 2.39 16 19 C -0.16 -2.76 10.02 71.98 0.72 -2.03 16 20 N -0.27 -10.51 6.29 -48.20 -0.30 -10.81 16 21 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 22 H 0.06 3.13 6.01 -2.39 -0.01 3.11 16 23 H 0.03 1.45 5.99 -2.38 -0.01 1.44 16 24 H 0.06 2.73 6.08 -2.39 -0.01 2.71 16 25 H 0.07 3.68 6.08 -2.39 -0.01 3.66 16 26 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 27 H 0.15 5.52 8.06 -2.91 -0.02 5.50 16 28 H 0.23 3.04 8.06 -2.91 -0.02 3.01 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.14 0.98 8.04 -2.39 -0.02 0.96 16 31 H 0.04 1.06 8.08 -2.38 -0.02 1.04 16 32 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -78.40 274.40 5.83 -72.58 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 1.11 Total: 12.18 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 5.75 Total: 4.30 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -2.99 Total: -93.24 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -0.07 Total: -41.33 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -78.40 5.83 -72.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565000398.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.366 kcal (2) G-P(sol) polarization free energy of solvation -78.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds