Wall clock time and date at job start Mon Mar 30 2020 17:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.47037 * 2 1 4 4 C 1.47195 * 109.47029 * 240.00534 * 2 1 3 5 5 N 2.60802 * 109.46969 * 240.00477 * 2 1 3 6 6 N 1.46897 * 109.47355 * 119.99966 * 2 1 3 7 7 C 1.46895 * 110.99994 * 300.00248 * 6 2 1 8 8 C 1.50705 * 109.47316 * 297.18658 * 7 6 2 9 9 O 1.21295 * 119.99573 * 354.62269 * 8 7 6 10 10 N 1.34773 * 120.00079 * 174.34856 * 8 7 6 11 11 C 1.37103 * 119.99873 * 180.27756 * 10 8 7 12 12 H 1.07997 * 119.99950 * 359.97438 * 11 10 8 13 13 C 1.38950 * 119.99788 * 180.02562 * 11 10 8 14 14 N 1.31408 * 119.99895 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99765 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46657 * 59.99932 * 15 13 11 17 17 H 1.48497 * 109.47084 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46850 * 300.00207 * 15 13 11 19 19 C 1.46899 * 110.99847 * 176.04801 * 6 2 1 20 20 C 1.53002 * 117.49877 * 250.68107 * 19 6 2 21 21 C 1.53000 * 60.00056 * 252.51374 * 20 19 6 22 22 H 1.09005 * 109.47624 * 59.99985 * 1 2 3 23 23 H 1.09002 * 109.47445 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47385 * 300.00078 * 1 2 3 25 25 H 1.09008 * 109.47031 * 177.19072 * 7 6 2 26 26 H 1.08995 * 109.47404 * 57.18554 * 7 6 2 27 27 H 0.96998 * 119.99888 * 0.27509 * 10 8 7 28 28 H 0.97007 * 119.99428 * 179.97438 * 14 13 11 29 29 H 1.08998 * 115.55633 * 36.38841 * 19 6 2 30 30 H 1.09006 * 117.49832 * 0.02562 * 20 19 6 31 31 H 1.09006 * 117.50138 * 145.01937 * 20 19 6 32 32 H 1.09007 * 117.49493 * 252.50991 * 21 20 19 33 33 H 1.08995 * 117.49914 * 107.49046 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6938 -1.2019 5 7 2.3992 -1.2293 -2.1296 6 7 2.0197 -0.6925 1.1994 7 6 1.5486 -0.0264 2.4210 8 6 2.1077 1.3719 2.4783 9 8 2.9044 1.7412 1.6415 10 7 1.7184 2.2138 3.4560 11 6 2.2227 3.4878 3.5048 12 1 2.9323 3.8165 2.7599 13 6 1.8217 4.3556 4.5131 14 7 0.9594 3.9551 5.4203 15 14 2.5094 6.0912 4.5800 16 1 2.1610 6.8101 3.3282 17 1 1.9270 6.8100 5.7416 18 1 3.9864 6.0331 4.7228 19 6 3.4851 -0.7944 1.1869 20 6 4.0950 -2.1794 0.9617 21 6 4.1515 -1.5349 2.3482 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8839 -0.5877 3.2932 26 1 0.4596 0.0178 2.4139 27 1 1.0813 1.9184 4.1252 28 1 0.6798 4.5609 6.1245 29 1 4.0125 0.0623 0.7674 30 1 3.4088 -3.0149 0.8224 31 1 5.0238 -2.2341 0.3937 32 1 5.1176 -1.1655 2.6924 33 1 3.5027 -1.9463 3.1213 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595713581.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:15 Heat of formation + Delta-G solvation = 27.824392 kcal Electronic energy + Delta-G solvation = -16940.134206 eV Core-core repulsion = 14195.316550 eV Total energy + Delta-G solvation = -2744.817656 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.60972 -37.32199 -36.11687 -34.52674 -33.83701 -31.41391 -30.23092 -27.24541 -24.77093 -22.84184 -22.02736 -20.83735 -19.17003 -18.04524 -17.68412 -16.19815 -15.65517 -15.02538 -14.86425 -14.38840 -14.33274 -13.79950 -13.20004 -12.94148 -12.54811 -12.44663 -12.33768 -11.85324 -11.67244 -11.60910 -11.35902 -11.21502 -11.16360 -10.70538 -10.51643 -10.31515 -10.17045 -9.88091 -9.55609 -9.26841 -8.07976 -7.72851 -6.51865 -3.93290 2.88136 3.05272 3.12495 3.20318 3.24042 3.74519 3.99037 4.09874 4.13988 4.22092 4.92371 5.13829 5.20125 5.27037 5.32765 5.45341 5.53106 5.66159 5.78927 5.86263 5.92380 6.06974 6.10826 6.17173 6.22646 6.39798 6.43914 7.00779 7.24759 7.45260 7.81516 7.93549 8.47582 9.06099 9.41482 9.90893 10.64492 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.032430 B = 0.006438 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.199866 B = 4348.101931 C = 4595.672761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.161 3.839 3 H 0.119 0.881 4 C 0.233 3.767 5 N -0.446 5.446 6 N -0.479 5.479 7 C 0.040 3.960 8 C 0.407 3.593 9 O -0.597 6.597 10 N -0.552 5.552 11 C -0.304 4.304 12 H 0.103 0.897 13 C 0.026 3.974 14 N -0.897 5.897 15 Si 0.930 3.070 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.016 3.984 20 C -0.174 4.174 21 C -0.168 4.168 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.393 0.607 28 H 0.274 0.726 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.364 -7.427 -2.905 8.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.050 3.950 3 H 0.136 0.864 4 C -0.085 4.085 5 N -0.123 5.123 6 N -0.203 5.203 7 C -0.091 4.091 8 C 0.192 3.808 9 O -0.484 6.484 10 N -0.187 5.187 11 C -0.434 4.434 12 H 0.121 0.879 13 C -0.176 4.176 14 N -0.537 5.537 15 Si 0.756 3.244 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.199 1.199 19 C -0.092 4.092 20 C -0.212 4.212 21 C -0.206 4.206 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.227 0.773 28 H 0.084 0.916 29 H 0.130 0.870 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.561 -8.350 -4.678 9.587 hybrid contribution 0.146 1.768 1.046 2.059 sum -0.415 -6.583 -3.631 7.529 Atomic orbital electron populations 1.21863 0.91684 1.03182 1.03393 1.19398 0.95921 0.97354 0.82322 0.86365 1.28997 0.92624 0.92734 0.94143 1.81096 1.09201 1.09661 1.12361 1.62310 1.09036 1.48533 1.00429 1.22192 1.01137 0.92812 0.92998 1.20882 0.86924 0.87943 0.85023 1.90454 1.38512 1.77848 1.41596 1.41992 1.39575 1.11960 1.25184 1.19664 1.24059 0.87650 1.11986 0.87939 1.25278 0.96510 1.00381 0.95464 1.69596 1.31787 1.37364 1.14964 0.85936 0.79147 0.81476 0.77799 1.19851 1.20891 1.19885 1.22528 0.87544 0.95195 1.03952 1.23067 1.01957 0.96865 0.99320 1.22953 1.02053 1.03763 0.91814 0.91431 0.91350 0.90317 0.88477 0.88434 0.77313 0.91645 0.87037 0.88813 0.89423 0.88909 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.92 37.15 0.33 -1.38 16 2 C 0.16 2.41 2.17 -70.51 -0.15 2.26 16 3 H 0.12 2.08 5.79 -51.92 -0.30 1.78 16 4 C 0.23 3.73 13.83 -20.76 -0.29 3.44 16 5 N -0.45 -7.77 18.54 42.16 0.78 -6.99 16 6 N -0.48 -7.25 4.70 -223.51 -1.05 -8.30 16 7 C 0.04 0.61 5.37 -4.98 -0.03 0.58 16 8 C 0.41 8.38 7.13 -10.98 -0.08 8.30 16 9 O -0.60 -13.95 11.68 5.54 0.06 -13.89 16 10 N -0.55 -12.69 5.29 -10.96 -0.06 -12.75 16 11 C -0.30 -7.90 9.68 -14.93 -0.14 -8.04 16 12 H 0.10 2.81 7.16 -52.49 -0.38 2.43 16 13 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 14 N -0.90 -23.09 13.05 55.50 0.72 -22.37 16 15 Si 0.93 20.11 29.55 -169.99 -5.02 15.09 16 16 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 C 0.02 0.26 3.00 -67.71 -0.20 0.06 16 20 C -0.17 -2.43 10.43 -26.73 -0.28 -2.71 16 21 C -0.17 -2.38 9.77 -26.73 -0.26 -2.64 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.08 0.93 6.34 -51.93 -0.33 0.60 16 25 H 0.10 1.39 6.97 -51.92 -0.36 1.03 16 26 H 0.10 1.29 6.16 -51.93 -0.32 0.97 16 27 H 0.39 8.68 7.90 -40.82 -0.32 8.35 16 28 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.11 2.11 6.78 -51.93 -0.35 1.76 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.09 1.29 8.14 -51.92 -0.42 0.87 16 33 H 0.10 1.27 7.39 -51.93 -0.38 0.88 16 LS Contribution 283.45 15.07 4.27 4.27 Total: -1.00 -28.34 283.45 -5.48 -33.82 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -3.99 Total: 10.66 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -1.20 Total: 0.45 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.40 Total: -50.40 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.06 Total: -13.89 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.34 -5.48 -33.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595713581.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.644 kcal (2) G-P(sol) polarization free energy of solvation -28.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds