Wall clock time and date at job start Mon Mar 30 2020 17:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47068 * 2 1 4 4 C 1.47198 * 109.47103 * 119.99787 * 2 1 3 5 5 N 2.60807 * 109.47002 * 119.99943 * 2 1 3 6 6 N 1.46896 * 109.47320 * 239.99916 * 2 1 3 7 7 C 1.46906 * 110.99929 * 60.00246 * 6 2 1 8 8 C 1.50699 * 109.47144 * 56.88319 * 7 6 2 9 9 O 1.21301 * 119.99940 * 6.30719 * 8 7 6 10 10 N 1.34771 * 119.99968 * 186.30886 * 8 7 6 11 11 C 1.37097 * 120.00115 * 180.02562 * 10 8 7 12 12 H 1.08005 * 120.00109 * 359.97438 * 11 10 8 13 13 C 1.38953 * 120.00441 * 179.97438 * 11 10 8 14 14 N 1.31403 * 120.00422 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99467 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47182 * 90.00191 * 15 13 11 17 17 H 1.48499 * 109.46649 * 210.00148 * 15 13 11 18 18 H 1.48499 * 109.47340 * 329.99842 * 15 13 11 19 19 C 1.46900 * 111.00188 * 183.95267 * 6 2 1 20 20 C 1.52998 * 117.50336 * 234.57723 * 19 6 2 21 21 C 1.52997 * 117.49953 * 165.95285 * 19 6 2 22 22 H 1.09002 * 109.46949 * 59.99972 * 1 2 3 23 23 H 1.08996 * 109.47167 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47359 * 299.99942 * 1 2 3 25 25 H 1.08997 * 109.46982 * 176.88543 * 7 6 2 26 26 H 1.09000 * 109.46670 * 296.88515 * 7 6 2 27 27 H 0.96997 * 120.00367 * 359.97438 * 10 8 7 28 28 H 0.96998 * 120.00537 * 179.97438 * 14 13 11 29 29 H 1.09005 * 115.54680 * 20.28684 * 19 6 2 30 30 H 1.09003 * 117.49449 * 359.97438 * 20 19 6 31 31 H 1.09000 * 117.50292 * 145.01772 * 20 19 6 32 32 H 1.09004 * 117.50035 * 214.98118 * 21 19 6 33 33 H 1.09002 * 117.50021 * 359.97438 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3993 -1.2294 2.1295 6 7 2.0197 -0.6925 -1.1994 7 6 1.5487 -0.0263 -2.4211 8 6 1.9866 1.4156 -2.4077 9 8 2.7231 1.8177 -1.5317 10 7 1.5600 2.2583 -3.3690 11 6 1.9587 3.5700 -3.3571 12 1 2.6145 3.9280 -2.5772 13 6 1.5193 4.4388 -4.3485 14 7 1.9011 5.6961 -4.3368 15 14 0.3857 3.8194 -5.6979 16 1 -1.0272 3.9859 -5.2725 17 1 0.6238 4.5974 -6.9401 18 1 0.6597 2.3824 -5.9537 19 6 3.4851 -0.7945 -1.1870 20 6 4.2414 -0.2516 -2.4011 21 6 4.1344 -1.7616 -2.1789 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.9705 -0.5261 -3.2931 26 1 0.4607 -0.0752 -2.4651 27 1 0.9714 1.9368 -4.0697 28 1 1.5947 6.3025 -5.0291 29 1 3.9557 -0.6844 -0.2100 30 1 3.6516 0.1808 -3.2093 31 1 5.2098 0.2159 -2.2231 32 1 5.0324 -2.2875 -1.8547 33 1 3.4742 -2.3225 -2.8405 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595713586.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:17 Heat of formation + Delta-G solvation = 44.701713 kcal Electronic energy + Delta-G solvation = -17170.663964 eV Core-core repulsion = 14426.578164 eV Total energy + Delta-G solvation = -2744.085800 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.11669 -37.38307 -36.27141 -34.45923 -33.89266 -31.84559 -30.18324 -27.66219 -24.71391 -22.96314 -21.98909 -20.67505 -19.44208 -18.44313 -17.76247 -16.61659 -15.71538 -15.34903 -14.77494 -14.59625 -14.08311 -13.47613 -13.33992 -12.87090 -12.81072 -12.54846 -12.42937 -12.09734 -11.85091 -11.69481 -11.49440 -11.37639 -11.09144 -10.85801 -10.67456 -10.52992 -10.09099 -10.04198 -9.58550 -9.19641 -8.30198 -7.73492 -6.43018 -3.94816 2.78941 2.94029 2.98072 2.99181 3.08668 3.52015 3.87028 3.99988 4.10650 4.34146 4.56781 5.07997 5.10868 5.22049 5.25919 5.34846 5.45164 5.48354 5.68487 5.73141 5.77648 5.89501 6.03431 6.08664 6.25687 6.35249 6.42394 6.92613 7.09929 7.42822 7.74044 8.01104 8.43812 8.81676 9.28794 9.64641 10.69420 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031136 B = 0.007266 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.072008 B = 3852.688304 C = 4120.299313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.150 3.850 3 H 0.134 0.866 4 C 0.232 3.768 5 N -0.447 5.447 6 N -0.474 5.474 7 C 0.029 3.971 8 C 0.414 3.586 9 O -0.570 6.570 10 N -0.580 5.580 11 C -0.308 4.308 12 H 0.121 0.879 13 C 0.044 3.956 14 N -0.875 5.875 15 Si 0.878 3.122 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.268 1.268 19 C 0.028 3.972 20 C -0.179 4.179 21 C -0.182 4.182 22 H 0.076 0.924 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.372 0.628 28 H 0.275 0.725 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.498 -11.336 0.039 11.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.039 3.961 3 H 0.151 0.849 4 C -0.086 4.086 5 N -0.124 5.124 6 N -0.196 5.196 7 C -0.102 4.102 8 C 0.200 3.800 9 O -0.454 6.454 10 N -0.217 5.217 11 C -0.437 4.437 12 H 0.138 0.862 13 C -0.160 4.160 14 N -0.514 5.514 15 Si 0.704 3.296 16 H -0.195 1.195 17 H -0.201 1.201 18 H -0.193 1.193 19 C -0.081 4.081 20 C -0.218 4.218 21 C -0.220 4.220 22 H 0.095 0.905 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.204 0.796 28 H 0.086 0.914 29 H 0.125 0.875 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.657 -12.120 1.938 12.558 hybrid contribution -0.632 0.768 -1.650 1.926 sum -3.288 -11.352 0.288 11.822 Atomic orbital electron populations 1.21842 0.91662 1.03078 1.03438 1.19693 0.96117 0.98398 0.81849 0.84942 1.29056 0.92658 0.92658 0.94267 1.81131 1.09327 1.09752 1.12197 1.62415 1.08789 1.47847 1.00544 1.22333 1.01906 0.92268 0.93685 1.20682 0.86148 0.87986 0.85176 1.90499 1.39506 1.77735 1.37700 1.42354 1.44137 1.10440 1.24817 1.19445 1.28860 0.82518 1.12879 0.86176 1.25077 0.97779 0.95256 0.97864 1.69614 1.43758 1.03601 1.34467 0.86695 0.81545 0.78976 0.82353 1.19477 1.20123 1.19345 1.22359 0.86424 1.03936 0.95373 1.23374 1.02686 0.94734 1.00971 1.23192 1.02177 0.93403 1.03272 0.90501 0.91408 0.91300 0.88278 0.88291 0.79551 0.91450 0.87535 0.88074 0.89028 0.89079 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.91 37.16 0.33 -1.33 16 2 C 0.15 2.20 2.12 -70.50 -0.15 2.05 16 3 H 0.13 2.32 5.32 -51.93 -0.28 2.05 16 4 C 0.23 3.65 13.18 -20.76 -0.27 3.37 16 5 N -0.45 -7.72 18.54 42.16 0.78 -6.93 16 6 N -0.47 -6.88 4.75 -223.51 -1.06 -7.94 16 7 C 0.03 0.42 4.92 -4.97 -0.02 0.40 16 8 C 0.41 7.96 5.40 -10.99 -0.06 7.90 16 9 O -0.57 -12.79 11.42 5.54 0.06 -12.72 16 10 N -0.58 -12.20 5.09 -10.96 -0.06 -12.26 16 11 C -0.31 -7.99 10.16 -14.93 -0.15 -8.14 16 12 H 0.12 3.61 7.39 -52.48 -0.39 3.22 16 13 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 14 N -0.88 -24.30 13.96 55.50 0.77 -23.53 16 15 Si 0.88 18.05 27.74 -169.99 -4.71 13.33 16 16 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 18 H -0.27 -4.95 6.52 56.52 0.37 -4.58 16 19 C 0.03 0.43 4.76 -67.72 -0.32 0.11 16 20 C -0.18 -2.81 7.96 -26.73 -0.21 -3.03 16 21 C -0.18 -2.39 10.13 -26.73 -0.27 -2.67 16 22 H 0.08 0.87 6.47 -51.93 -0.34 0.54 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.10 1.28 6.53 -51.93 -0.34 0.94 16 26 H 0.10 1.17 6.48 -51.93 -0.34 0.83 16 27 H 0.37 6.87 5.76 -40.82 -0.24 6.63 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.11 1.75 6.85 -51.93 -0.36 1.40 16 30 H 0.10 1.70 4.91 -51.93 -0.25 1.44 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.14 8.11 -51.93 -0.42 0.72 16 LS Contribution 273.97 15.07 4.13 4.13 Total: -1.00 -29.28 273.97 -5.12 -34.39 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -3.80 Total: 11.82 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.23 Total: -0.29 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.44 Total: -50.66 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.06 Total: -12.72 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -4.71 Total: 13.33 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.28 -5.12 -34.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595713586.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.093 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds