Wall clock time and date at job start Mon Mar 30 2020 17:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47068 * 2 1 4 4 C 1.47198 * 109.47103 * 119.99787 * 2 1 3 5 5 N 2.60807 * 109.47002 * 119.99943 * 2 1 3 6 6 N 1.46896 * 109.47320 * 239.99916 * 2 1 3 7 7 C 1.46906 * 110.99929 * 60.00246 * 6 2 1 8 8 C 1.50699 * 109.47144 * 56.88319 * 7 6 2 9 9 O 1.21301 * 119.99940 * 6.30719 * 8 7 6 10 10 N 1.34771 * 119.99968 * 186.30886 * 8 7 6 11 11 C 1.37097 * 120.00115 * 180.02562 * 10 8 7 12 12 H 1.08005 * 120.00109 * 359.97438 * 11 10 8 13 13 C 1.38953 * 120.00441 * 179.97438 * 11 10 8 14 14 N 1.31403 * 120.00422 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99467 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47182 * 90.00191 * 15 13 11 17 17 H 1.48499 * 109.46649 * 210.00148 * 15 13 11 18 18 H 1.48499 * 109.47340 * 329.99842 * 15 13 11 19 19 C 1.46900 * 111.00188 * 183.95267 * 6 2 1 20 20 C 1.52998 * 117.50336 * 234.57723 * 19 6 2 21 21 C 1.52997 * 117.49953 * 165.95285 * 19 6 2 22 22 H 1.09002 * 109.46949 * 59.99972 * 1 2 3 23 23 H 1.08996 * 109.47167 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47359 * 299.99942 * 1 2 3 25 25 H 1.08997 * 109.46982 * 176.88543 * 7 6 2 26 26 H 1.09000 * 109.46670 * 296.88515 * 7 6 2 27 27 H 0.96997 * 120.00367 * 359.97438 * 10 8 7 28 28 H 0.96998 * 120.00537 * 179.97438 * 14 13 11 29 29 H 1.09005 * 115.54680 * 20.28684 * 19 6 2 30 30 H 1.09003 * 117.49449 * 359.97438 * 20 19 6 31 31 H 1.09000 * 117.50292 * 145.01772 * 20 19 6 32 32 H 1.09004 * 117.50035 * 214.98118 * 21 19 6 33 33 H 1.09002 * 117.50021 * 359.97438 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3993 -1.2294 2.1295 6 7 2.0197 -0.6925 -1.1994 7 6 1.5487 -0.0263 -2.4211 8 6 1.9866 1.4156 -2.4077 9 8 2.7231 1.8177 -1.5317 10 7 1.5600 2.2583 -3.3690 11 6 1.9587 3.5700 -3.3571 12 1 2.6145 3.9280 -2.5772 13 6 1.5193 4.4388 -4.3485 14 7 1.9011 5.6961 -4.3368 15 14 0.3857 3.8194 -5.6979 16 1 -1.0272 3.9859 -5.2725 17 1 0.6238 4.5974 -6.9401 18 1 0.6597 2.3824 -5.9537 19 6 3.4851 -0.7945 -1.1870 20 6 4.2414 -0.2516 -2.4011 21 6 4.1344 -1.7616 -2.1789 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.9705 -0.5261 -3.2931 26 1 0.4607 -0.0752 -2.4651 27 1 0.9714 1.9368 -4.0697 28 1 1.5947 6.3025 -5.0291 29 1 3.9557 -0.6844 -0.2100 30 1 3.6516 0.1808 -3.2093 31 1 5.2098 0.2159 -2.2231 32 1 5.0324 -2.2875 -1.8547 33 1 3.4742 -2.3225 -2.8405 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595713586.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:17 Heat of formation + Delta-G solvation = 22.686864 kcal Electronic energy + Delta-G solvation = -17171.618600 eV Core-core repulsion = 14426.578164 eV Total energy + Delta-G solvation = -2745.040436 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.49692 -38.87980 -37.55310 -35.99277 -35.36598 -33.71967 -31.37593 -28.95558 -26.40988 -24.20320 -23.11751 -22.03502 -21.10368 -20.06519 -19.09509 -17.96346 -17.20084 -16.85003 -16.27324 -15.84969 -15.42026 -15.05677 -14.73899 -14.48570 -14.21481 -13.98361 -13.71611 -13.35643 -13.00639 -12.85670 -12.80728 -12.75272 -12.38612 -12.29296 -11.99564 -11.92891 -11.78292 -11.39083 -11.11412 -10.71710 -10.15582 -9.09530 -8.36180 -5.95894 1.35596 1.40073 1.49087 1.52874 1.71132 1.97983 2.27918 2.65424 2.88349 2.96127 3.21522 3.26783 3.90304 4.01498 4.10632 4.18638 4.24011 4.35831 4.50273 4.64809 4.70939 4.83870 4.90208 5.02327 5.11830 5.27824 5.29883 5.57801 5.73706 5.87680 6.02489 6.47247 6.62631 6.94504 7.45271 8.00098 8.81054 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031136 B = 0.007266 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.072008 B = 3852.688304 C = 4120.299313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.150 3.850 3 H 0.102 0.898 4 C 0.247 3.753 5 N -0.475 5.475 6 N -0.459 5.459 7 C 0.037 3.963 8 C 0.426 3.574 9 O -0.604 6.604 10 N -0.586 5.586 11 C -0.320 4.320 12 H 0.057 0.943 13 C -0.016 4.016 14 N -0.937 5.937 15 Si 0.959 3.041 16 H -0.257 1.257 17 H -0.283 1.283 18 H -0.226 1.226 19 C 0.009 3.991 20 C -0.198 4.198 21 C -0.146 4.146 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.126 0.874 26 H 0.140 0.860 27 H 0.390 0.610 28 H 0.277 0.723 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.647 -14.525 -1.574 15.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.040 3.960 3 H 0.119 0.881 4 C -0.071 4.071 5 N -0.152 5.152 6 N -0.181 5.181 7 C -0.094 4.094 8 C 0.213 3.787 9 O -0.489 6.489 10 N -0.227 5.227 11 C -0.449 4.449 12 H 0.076 0.924 13 C -0.214 4.214 14 N -0.577 5.577 15 Si 0.779 3.221 16 H -0.181 1.181 17 H -0.209 1.209 18 H -0.149 1.149 19 C -0.101 4.101 20 C -0.236 4.236 21 C -0.184 4.184 22 H 0.104 0.896 23 H 0.106 0.894 24 H 0.094 0.906 25 H 0.144 0.856 26 H 0.157 0.843 27 H 0.225 0.775 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.800 -15.353 0.349 16.090 hybrid contribution 0.178 1.747 -0.970 2.006 sum -4.623 -13.606 -0.621 14.383 Atomic orbital electron populations 1.21884 0.88803 1.04647 1.04308 1.19721 0.98253 0.96392 0.81662 0.88061 1.29223 0.91808 0.92008 0.94060 1.81140 1.10266 1.10804 1.13040 1.62566 1.08091 1.46955 1.00490 1.22550 1.04443 0.87908 0.94524 1.21810 0.83875 0.89785 0.83229 1.90521 1.40473 1.79057 1.38846 1.42161 1.45455 1.08760 1.26323 1.18976 1.28778 0.85219 1.11939 0.92443 1.26087 0.99584 0.94981 1.00751 1.69805 1.46231 1.05624 1.36081 0.85450 0.78851 0.80446 0.77347 1.18109 1.20893 1.14910 1.22451 0.87049 1.05811 0.94767 1.23284 1.01998 0.97346 1.01016 1.23274 1.02344 0.91593 1.01167 0.89647 0.89394 0.90577 0.85580 0.84255 0.77473 0.91390 0.89359 0.89027 0.90723 0.87612 0.86460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.91 71.98 0.64 -2.16 16 2 C 0.15 4.19 2.12 43.11 0.09 4.28 16 3 H 0.10 3.58 5.32 -2.39 -0.01 3.57 16 4 C 0.25 7.53 13.18 89.44 1.18 8.71 16 5 N -0.47 -16.10 18.54 20.01 0.37 -15.72 16 6 N -0.46 -12.05 4.75 -861.04 -4.09 -16.14 16 7 C 0.04 0.91 4.92 85.56 0.42 1.33 16 8 C 0.43 15.90 5.40 87.66 0.47 16.37 16 9 O -0.60 -27.82 11.42 -3.09 -0.04 -27.86 16 10 N -0.59 -24.01 5.09 -306.98 -1.56 -25.57 16 11 C -0.32 -17.15 10.16 84.04 0.85 -16.29 16 12 H 0.06 3.73 7.39 -2.91 -0.02 3.71 16 13 C -0.02 -0.81 5.50 84.93 0.47 -0.34 16 14 N -0.94 -54.35 13.96 21.66 0.30 -54.04 16 15 Si 0.96 36.05 27.74 68.60 1.90 37.95 16 16 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 17 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 18 H -0.23 -6.89 6.52 99.48 0.65 -6.24 16 19 C 0.01 0.25 4.76 44.91 0.21 0.46 16 20 C -0.20 -6.02 7.96 30.59 0.24 -5.77 16 21 C -0.15 -3.37 10.13 30.59 0.31 -3.06 16 22 H 0.08 1.60 6.47 -2.39 -0.02 1.58 16 23 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.13 2.61 6.53 -2.39 -0.02 2.59 16 26 H 0.14 2.47 6.48 -2.39 -0.02 2.45 16 27 H 0.39 13.04 5.76 -92.71 -0.53 12.50 16 28 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 29 H 0.09 2.91 6.85 -2.38 -0.02 2.89 16 30 H 0.09 2.94 4.91 -2.39 -0.01 2.93 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.12 2.22 8.11 -2.39 -0.02 2.20 16 Total: -1.00 -69.16 273.97 2.33 -66.83 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.55 Total: 31.03 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 4.90 Total: 3.53 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -4.98 Total: -111.49 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.04 Total: -27.86 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 1.90 Total: 37.95 kcal Total: -69.16 2.33 -66.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595713586.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.517 kcal (2) G-P(sol) polarization free energy of solvation -69.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds