Wall clock time and date at job start Mon Mar 30 2020 17:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46637 * 2 1 4 4 C 1.50692 * 109.47138 * 240.00316 * 2 1 3 5 5 H 1.07995 * 120.00337 * 241.34127 * 4 2 1 6 6 C 1.37880 * 120.00053 * 61.34048 * 4 2 1 7 7 N 1.31518 * 120.00231 * 193.97758 * 6 4 2 8 8 Si 1.86807 * 119.99982 * 13.98144 * 6 4 2 9 9 H 1.48491 * 109.47016 * 84.54499 * 8 6 4 10 10 H 1.48502 * 109.46820 * 204.54832 * 8 6 4 11 11 H 1.48496 * 109.46932 * 324.54675 * 8 6 4 12 12 C 1.53001 * 109.47312 * 119.99835 * 2 1 3 13 13 N 1.46497 * 109.47290 * 300.00278 * 12 2 1 14 14 C 1.34769 * 119.99817 * 179.97438 * 13 12 2 15 15 O 1.21611 * 120.00317 * 359.97438 * 14 13 12 16 16 C 1.47417 * 119.99932 * 179.97438 * 14 13 12 17 17 N 1.31608 * 125.86320 * 359.69396 * 16 14 13 18 18 C 1.33104 * 109.09377 * 179.83356 * 17 16 14 19 19 C 1.35560 * 108.34803 * 0.42924 * 18 17 16 20 20 N 1.35396 * 107.16182 * 359.74368 * 19 18 17 21 21 H 0.97005 * 126.43723 * 179.97438 * 20 19 18 22 22 H 1.09007 * 109.47090 * 309.36239 * 1 2 3 23 23 H 1.08994 * 109.47770 * 69.36772 * 1 2 3 24 24 H 1.09003 * 109.47116 * 189.36965 * 1 2 3 25 25 H 1.08998 * 109.46764 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47537 * 299.99984 * 3 2 1 27 27 H 1.08996 * 109.47140 * 60.00442 * 3 2 1 28 28 H 0.97001 * 120.00247 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46515 * 180.02562 * 12 2 1 30 30 H 1.08999 * 109.46373 * 60.00379 * 12 2 1 31 31 H 0.97001 * 120.00271 * 359.97438 * 13 12 2 32 32 H 1.07996 * 125.82336 * 180.21144 * 18 17 16 33 33 H 1.08005 * 126.41818 * 179.77591 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6352 -1.6008 -1.1316 6 6 1.7222 -0.2233 -2.4825 7 7 1.9156 -0.9724 -3.5460 8 14 1.0273 1.5008 -2.6684 9 1 2.1414 2.4818 -2.7083 10 1 0.2467 1.5866 -3.9287 11 1 0.1416 1.8043 -1.5158 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4914 3.6694 15 8 2.5754 -1.4807 3.7810 16 6 1.3860 0.2038 4.8731 17 7 0.6316 1.2821 4.8869 18 6 0.3834 1.6237 6.1492 19 6 1.0091 0.7374 6.9620 20 7 1.6410 -0.1574 6.1663 21 1 2.1747 -0.9127 6.4590 22 1 -0.3633 0.6518 0.7946 23 1 -0.3634 0.3621 -0.9617 24 1 -0.3633 -1.0140 0.1673 25 1 3.1299 1.4426 -0.0005 26 1 1.6765 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6978 -0.6297 -4.4269 29 1 3.1300 -0.7207 1.2494 30 1 1.6767 -1.7489 1.2491 31 1 0.9943 0.7582 2.3565 32 1 -0.2117 2.4655 6.4709 33 1 1.0040 0.7436 8.0421 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597759739.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:39 Heat of formation + Delta-G solvation = 33.382810 kcal Electronic energy + Delta-G solvation = -16768.201453 eV Core-core repulsion = 14023.624828 eV Total energy + Delta-G solvation = -2744.576625 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.28691 -39.16222 -36.72065 -33.60342 -32.65047 -31.50894 -29.87241 -26.38824 -26.16369 -24.95065 -23.04578 -21.67103 -20.35442 -19.37381 -18.53049 -16.51869 -16.02873 -15.68672 -15.35004 -15.03770 -14.40026 -14.06907 -13.92967 -13.54467 -13.13258 -12.87222 -12.58516 -12.18149 -11.99174 -11.31793 -10.46571 -10.41589 -10.39913 -10.36683 -10.13991 -10.03453 -9.99203 -9.10900 -8.86262 -8.66041 -8.52765 -8.42907 -6.13223 -4.10698 1.34522 2.55207 2.62494 3.27952 3.35900 3.41868 3.51572 3.68899 4.38281 4.39850 4.86903 5.11287 5.17975 5.21199 5.73811 5.82104 6.04629 6.09871 6.38682 6.42783 6.47581 6.55629 6.63390 6.70931 6.73150 6.96469 6.97661 7.22438 7.44375 7.57728 7.73530 7.91134 8.37170 8.47444 8.91378 9.50818 10.99675 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.046999 B = 0.005919 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.608199 B = 4729.475931 C = 5121.273806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.029 3.971 3 C -0.150 4.150 4 C -0.513 4.513 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.891 5.891 8 Si 0.884 3.116 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.247 1.247 12 C 0.141 3.859 13 N -0.691 5.691 14 C 0.595 3.405 15 O -0.550 6.550 16 C 0.154 3.846 17 N -0.446 5.446 18 C -0.030 4.030 19 C -0.033 4.033 20 N -0.527 5.527 21 H 0.430 0.570 22 H 0.025 0.975 23 H 0.057 0.943 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.033 0.967 28 H 0.265 0.735 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.410 0.590 32 H 0.177 0.823 33 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.953 5.119 18.683 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.027 3.973 3 C -0.207 4.207 4 C -0.551 4.551 5 H 0.095 0.905 6 C -0.126 4.126 7 N -0.528 5.528 8 Si 0.717 3.283 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.173 1.173 12 C 0.019 3.981 13 N -0.342 5.342 14 C 0.377 3.623 15 O -0.428 6.428 16 C -0.108 4.108 17 N -0.168 5.168 18 C -0.183 4.183 19 C -0.172 4.172 20 N -0.128 5.128 21 H 0.269 0.731 22 H 0.044 0.956 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.246 0.754 32 H 0.194 0.806 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.729 4.771 17.757 18.588 hybrid contribution -0.075 0.656 0.711 0.970 sum -2.804 5.427 18.467 19.451 Atomic orbital electron populations 1.22310 0.97668 0.99973 1.00207 1.18733 0.92702 0.92361 0.93477 1.22374 1.01185 0.98238 0.98871 1.20689 1.34150 1.12331 0.87935 0.90503 1.24959 0.94606 0.97314 0.95752 1.69950 1.48182 1.35926 0.98725 0.87308 0.79441 0.85515 0.76075 1.21323 1.23401 1.17336 1.21672 0.98872 0.95970 0.81595 1.46051 1.51490 1.31709 1.04918 1.16533 0.80606 0.83286 0.81855 1.90825 1.39210 1.26193 1.86600 1.22977 1.04511 0.97329 0.85971 1.70251 1.13069 1.10089 1.23404 1.22502 1.05245 1.02400 0.88109 1.22943 1.01800 0.94217 0.98224 1.42975 1.38783 1.24594 1.06480 0.73113 0.95587 0.92439 0.93383 0.92762 0.93960 0.94831 0.92553 0.91479 0.91367 0.75353 0.80576 0.79818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 7.53 37.16 0.28 -2.74 16 2 C 0.03 0.63 0.50 -155.66 -0.08 0.55 16 3 C -0.15 -3.12 7.52 37.16 0.28 -2.84 16 4 C -0.51 -13.79 8.62 -34.44 -0.30 -14.08 16 5 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 6 C 0.08 2.13 5.32 -17.82 -0.09 2.03 16 7 N -0.89 -26.67 13.96 55.43 0.77 -25.89 16 8 Si 0.88 21.28 22.79 -169.99 -3.87 17.41 16 9 H -0.29 -6.85 7.10 56.52 0.40 -6.45 16 10 H -0.31 -7.51 7.11 56.52 0.40 -7.10 16 11 H -0.25 -5.47 4.65 56.52 0.26 -5.20 16 12 C 0.14 2.84 4.49 -4.04 -0.02 2.83 16 13 N -0.69 -12.22 5.00 -61.39 -0.31 -12.52 16 14 C 0.59 10.32 7.81 -12.53 -0.10 10.22 16 15 O -0.55 -10.77 17.09 5.27 0.09 -10.68 16 16 C 0.15 2.26 7.95 -154.52 -1.23 1.03 16 17 N -0.45 -6.40 10.89 -11.26 -0.12 -6.53 16 18 C -0.03 -0.32 11.85 -17.96 -0.21 -0.53 16 19 C -0.03 -0.28 12.00 -16.94 -0.20 -0.48 16 20 N -0.53 -5.69 6.14 -10.78 -0.07 -5.76 16 21 H 0.43 3.73 8.96 -40.82 -0.37 3.36 16 22 H 0.03 0.47 7.13 -51.93 -0.37 0.10 16 23 H 0.06 1.27 4.30 -51.93 -0.22 1.05 16 24 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 25 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.04 0.93 2.25 -51.93 -0.12 0.81 16 27 H 0.03 0.60 6.86 -51.93 -0.36 0.24 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.41 6.88 5.94 -40.82 -0.24 6.64 16 32 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.18 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 268.74 15.07 4.05 4.05 Total: -1.00 -32.02 268.74 -5.03 -37.05 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -3.90 Total: 6.89 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -1.67 Total: -4.01 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.28 Total: -50.70 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -3.87 Total: 17.41 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.02 -5.03 -37.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597759739.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.430 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds