Wall clock time and date at job start Mon Mar 30 2020 17:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46637 * 2 1 4 4 C 1.50692 * 109.47138 * 240.00316 * 2 1 3 5 5 H 1.07995 * 120.00337 * 241.34127 * 4 2 1 6 6 C 1.37880 * 120.00053 * 61.34048 * 4 2 1 7 7 N 1.31518 * 120.00231 * 193.97758 * 6 4 2 8 8 Si 1.86807 * 119.99982 * 13.98144 * 6 4 2 9 9 H 1.48491 * 109.47016 * 84.54499 * 8 6 4 10 10 H 1.48502 * 109.46820 * 204.54832 * 8 6 4 11 11 H 1.48496 * 109.46932 * 324.54675 * 8 6 4 12 12 C 1.53001 * 109.47312 * 119.99835 * 2 1 3 13 13 N 1.46497 * 109.47290 * 300.00278 * 12 2 1 14 14 C 1.34769 * 119.99817 * 179.97438 * 13 12 2 15 15 O 1.21611 * 120.00317 * 359.97438 * 14 13 12 16 16 C 1.47417 * 119.99932 * 179.97438 * 14 13 12 17 17 N 1.31608 * 125.86320 * 359.69396 * 16 14 13 18 18 C 1.33104 * 109.09377 * 179.83356 * 17 16 14 19 19 C 1.35560 * 108.34803 * 0.42924 * 18 17 16 20 20 N 1.35396 * 107.16182 * 359.74368 * 19 18 17 21 21 H 0.97005 * 126.43723 * 179.97438 * 20 19 18 22 22 H 1.09007 * 109.47090 * 309.36239 * 1 2 3 23 23 H 1.08994 * 109.47770 * 69.36772 * 1 2 3 24 24 H 1.09003 * 109.47116 * 189.36965 * 1 2 3 25 25 H 1.08998 * 109.46764 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47537 * 299.99984 * 3 2 1 27 27 H 1.08996 * 109.47140 * 60.00442 * 3 2 1 28 28 H 0.97001 * 120.00247 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46515 * 180.02562 * 12 2 1 30 30 H 1.08999 * 109.46373 * 60.00379 * 12 2 1 31 31 H 0.97001 * 120.00271 * 359.97438 * 13 12 2 32 32 H 1.07996 * 125.82336 * 180.21144 * 18 17 16 33 33 H 1.08005 * 126.41818 * 179.77591 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6352 -1.6008 -1.1316 6 6 1.7222 -0.2233 -2.4825 7 7 1.9156 -0.9724 -3.5460 8 14 1.0273 1.5008 -2.6684 9 1 2.1414 2.4818 -2.7083 10 1 0.2467 1.5866 -3.9287 11 1 0.1416 1.8043 -1.5158 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4914 3.6694 15 8 2.5754 -1.4807 3.7810 16 6 1.3860 0.2038 4.8731 17 7 0.6316 1.2821 4.8869 18 6 0.3834 1.6237 6.1492 19 6 1.0091 0.7374 6.9620 20 7 1.6410 -0.1574 6.1663 21 1 2.1747 -0.9127 6.4590 22 1 -0.3633 0.6518 0.7946 23 1 -0.3634 0.3621 -0.9617 24 1 -0.3633 -1.0140 0.1673 25 1 3.1299 1.4426 -0.0005 26 1 1.6765 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6978 -0.6297 -4.4269 29 1 3.1300 -0.7207 1.2494 30 1 1.6767 -1.7489 1.2491 31 1 0.9943 0.7582 2.3565 32 1 -0.2117 2.4655 6.4709 33 1 1.0040 0.7436 8.0421 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597759739.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:38 Heat of formation + Delta-G solvation = 8.298778 kcal Electronic energy + Delta-G solvation = -16769.289179 eV Core-core repulsion = 14023.624828 eV Total energy + Delta-G solvation = -2745.664350 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.17071 -40.57795 -38.40492 -35.16668 -33.80640 -33.30530 -30.84922 -28.04792 -27.69559 -26.95859 -24.28202 -22.48342 -21.49897 -21.00690 -19.81364 -18.13382 -17.66550 -16.89998 -16.81366 -16.66623 -15.69102 -15.20589 -14.91216 -14.86088 -14.58178 -14.53213 -14.32105 -14.01145 -13.75493 -12.97950 -12.39386 -12.19912 -11.96072 -11.77342 -11.47928 -11.32364 -11.30269 -11.05090 -10.61229 -10.40701 -10.18449 -9.50940 -8.29494 -6.30932 0.34380 1.38352 1.39759 1.51705 1.61870 1.66735 2.35727 2.37863 2.61545 3.06552 3.32556 4.01113 4.11321 4.30383 4.38352 4.40554 4.50507 4.72822 4.80963 4.86124 4.91556 5.01821 5.05855 5.12962 5.35007 5.48388 5.64299 5.70315 5.77145 6.17553 6.29446 6.41392 6.72386 6.85877 7.07870 7.34028 8.87328 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.046999 B = 0.005919 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.608199 B = 4729.475931 C = 5121.273806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.027 3.973 3 C -0.148 4.148 4 C -0.516 4.516 5 H 0.033 0.967 6 C 0.020 3.980 7 N -0.944 5.944 8 Si 0.941 3.059 9 H -0.281 1.281 10 H -0.314 1.314 11 H -0.209 1.209 12 C 0.156 3.844 13 N -0.688 5.688 14 C 0.596 3.404 15 O -0.583 6.583 16 C 0.108 3.892 17 N -0.463 5.463 18 C -0.051 4.051 19 C 0.007 3.993 20 N -0.518 5.518 21 H 0.438 0.562 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.036 0.964 27 H 0.067 0.933 28 H 0.265 0.735 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.416 0.584 32 H 0.206 0.794 33 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.356 7.568 22.002 23.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.026 3.974 3 C -0.205 4.205 4 C -0.554 4.554 5 H 0.051 0.949 6 C -0.177 4.177 7 N -0.583 5.583 8 Si 0.771 3.229 9 H -0.208 1.208 10 H -0.243 1.243 11 H -0.132 1.132 12 C 0.033 3.967 13 N -0.339 5.339 14 C 0.382 3.618 15 O -0.463 6.463 16 C -0.151 4.151 17 N -0.186 5.186 18 C -0.205 4.205 19 C -0.133 4.133 20 N -0.121 5.121 21 H 0.279 0.721 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.254 0.746 32 H 0.223 0.777 33 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -4.131 7.218 21.103 22.683 hybrid contribution 0.388 -0.172 -0.132 0.444 sum -3.744 7.046 20.971 22.437 Atomic orbital electron populations 1.22230 0.96192 1.00667 1.00831 1.18666 0.93754 0.93095 0.91879 1.22305 1.01134 0.96916 1.00139 1.20969 1.32984 1.11166 0.90265 0.94893 1.25795 0.95316 1.01376 0.95244 1.70100 1.50638 1.38183 0.99389 0.86376 0.79465 0.80224 0.76882 1.20847 1.24296 1.13243 1.21220 0.97912 0.95223 0.82391 1.45787 1.51900 1.31808 1.04389 1.16847 0.79690 0.82801 0.82510 1.90796 1.40642 1.27684 1.87180 1.22222 1.07791 0.98952 0.86165 1.70159 1.12834 1.09887 1.25766 1.23167 1.06220 1.03942 0.87124 1.23833 0.97970 0.91443 1.00071 1.43064 1.38425 1.25028 1.05559 0.72085 0.92185 0.93395 0.93801 0.93140 0.94528 0.91400 0.92625 0.92892 0.93083 0.74588 0.77743 0.74676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.67 7.53 71.98 0.54 -5.13 16 2 C 0.03 1.19 0.50 -52.93 -0.03 1.17 16 3 C -0.15 -5.85 7.52 71.98 0.54 -5.30 16 4 C -0.52 -28.62 8.62 25.60 0.22 -28.40 16 5 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 6 C 0.02 1.16 5.32 84.65 0.45 1.61 16 7 N -0.94 -58.69 13.96 21.45 0.30 -58.39 16 8 Si 0.94 43.47 22.79 68.60 1.56 45.04 16 9 H -0.28 -12.73 7.10 99.48 0.71 -12.02 16 10 H -0.31 -14.85 7.11 99.48 0.71 -14.14 16 11 H -0.21 -8.33 4.65 99.48 0.46 -7.86 16 12 C 0.16 6.39 4.49 86.38 0.39 6.78 16 13 N -0.69 -23.75 5.00 -466.39 -2.33 -26.09 16 14 C 0.60 20.44 7.81 86.66 0.68 21.11 16 15 O -0.58 -23.09 17.09 -4.07 -0.07 -23.16 16 16 C 0.11 2.96 7.95 136.28 1.08 4.04 16 17 N -0.46 -12.03 10.89 -189.53 -2.06 -14.09 16 18 C -0.05 -0.88 11.85 83.88 0.99 0.11 16 19 C 0.01 0.09 12.00 83.52 1.00 1.09 16 20 N -0.52 -9.64 6.14 -188.02 -1.16 -10.80 16 21 H 0.44 6.49 8.96 -92.70 -0.83 5.66 16 22 H 0.06 1.99 7.13 -2.38 -0.02 1.97 16 23 H 0.05 2.00 4.30 -2.39 -0.01 1.99 16 24 H 0.04 1.76 8.12 -2.39 -0.02 1.74 16 25 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 26 H 0.04 1.49 2.25 -2.39 -0.01 1.49 16 27 H 0.07 2.21 6.86 -2.39 -0.02 2.19 16 28 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.42 13.09 5.94 -92.71 -0.55 12.54 16 32 H 0.21 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.24 0.28 8.06 -2.91 -0.02 0.26 16 Total: -1.00 -72.92 268.74 1.64 -71.28 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -0.47 Total: 19.14 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 5.87 Total: -2.92 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -5.25 Total: -109.37 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.07 Total: -23.16 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.56 Total: 45.04 kcal Total: -72.92 1.64 -71.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597759739.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.578 kcal (2) G-P(sol) polarization free energy of solvation -72.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds