Wall clock time and date at job start Mon Mar 30 2020 17:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47339 * 2 1 4 4 C 1.36932 * 120.00320 * 270.16873 * 3 2 1 5 5 H 1.08001 * 120.00253 * 323.78379 * 4 3 2 6 6 C 1.38815 * 120.00128 * 143.77568 * 4 3 2 7 7 N 1.31627 * 119.99770 * 338.71492 * 6 4 3 8 8 Si 1.86792 * 120.00006 * 158.71432 * 6 4 3 9 9 H 1.48501 * 109.47172 * 90.00262 * 8 6 4 10 10 H 1.48502 * 109.47136 * 209.99945 * 8 6 4 11 11 H 1.48497 * 109.47468 * 330.00422 * 8 6 4 12 12 C 1.46506 * 119.99772 * 89.89039 * 3 2 1 13 13 C 1.50698 * 109.46790 * 90.00110 * 12 3 2 14 14 C 1.38222 * 120.01635 * 259.72562 * 13 12 3 15 15 C 1.38220 * 120.02839 * 179.71942 * 14 13 12 16 16 C 1.38276 * 120.04997 * 0.55725 * 15 14 13 17 17 C 1.50699 * 119.98763 * 179.74137 * 16 15 14 18 18 C 1.38178 * 120.02222 * 359.72111 * 16 15 14 19 19 C 1.38442 * 120.01181 * 80.00269 * 13 12 3 20 20 F 1.35094 * 120.02554 * 0.02562 * 19 13 12 21 21 H 1.09003 * 109.47064 * 299.99558 * 1 2 3 22 22 H 1.08994 * 109.47363 * 59.99728 * 1 2 3 23 23 H 1.09002 * 109.47425 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46737 * 240.00006 * 2 1 3 25 25 H 1.08998 * 109.46976 * 120.00598 * 2 1 3 26 26 H 0.97001 * 119.99547 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.47009 * 210.00162 * 12 3 2 28 28 H 1.09003 * 109.47027 * 330.00839 * 12 3 2 29 29 H 1.08001 * 119.98519 * 0.02562 * 14 13 12 30 30 H 1.08000 * 119.97725 * 180.27192 * 15 14 13 31 31 H 1.08996 * 109.46818 * 269.98038 * 17 16 15 32 32 H 1.08999 * 109.46873 * 29.97662 * 17 16 15 33 33 H 1.08998 * 109.46996 * 149.97903 * 17 16 15 34 34 H 1.07998 * 120.00609 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2433 2.0279 -1.1858 5 1 2.6342 1.4830 -2.0325 6 6 1.9689 3.3838 -1.2999 7 7 1.1304 3.9582 -0.4635 8 14 2.7896 4.3933 -2.6403 9 1 1.9457 4.3732 -3.8620 10 1 2.9534 5.7940 -2.1749 11 1 4.1221 3.8154 -2.9496 12 6 2.2603 2.0725 1.2688 13 6 3.6827 1.8359 1.7065 14 6 3.9605 0.8849 2.6702 15 6 5.2657 0.6636 3.0677 16 6 6.2938 1.4012 2.5101 17 6 7.7158 1.1628 2.9487 18 6 6.0179 2.3565 1.5506 19 6 4.7113 2.5751 1.1475 20 9 4.4403 3.5092 0.2099 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 0.9390 4.9058 -0.5430 27 1 2.0935 3.1416 1.1375 28 1 1.5781 1.6888 2.0275 29 1 3.1579 0.3110 3.1094 30 1 5.4823 -0.0828 3.8176 31 1 7.9501 1.8138 3.7909 32 1 7.8333 0.1220 3.2502 33 1 8.3922 1.3803 2.1221 34 1 6.8212 2.9322 1.1150 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602449418.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:10 Heat of formation + Delta-G solvation = -8.601941 kcal Electronic energy + Delta-G solvation = -17257.756143 eV Core-core repulsion = 14491.438961 eV Total energy + Delta-G solvation = -2766.317182 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.80726 -38.64752 -35.90479 -32.56874 -31.74810 -29.93916 -29.17813 -27.35434 -24.57166 -23.20959 -22.16622 -20.80675 -19.77559 -16.85152 -16.08848 -15.79784 -15.10280 -14.69749 -14.51679 -13.78638 -13.67289 -13.51569 -13.32259 -12.79252 -12.70828 -12.29339 -11.84413 -11.75575 -11.37204 -11.30026 -11.01581 -10.87897 -10.59886 -10.39825 -10.31921 -9.98879 -9.89880 -9.73889 -8.44253 -8.29520 -7.77803 -6.58793 -5.75866 -3.29442 1.79943 1.83584 3.41691 3.49282 3.54773 4.15670 4.57068 4.97216 5.18921 5.27309 5.39968 5.55909 5.64991 5.68771 5.71096 5.81709 5.94303 6.07008 6.13797 6.42722 6.44475 6.50221 6.54581 6.67304 6.76882 6.89730 6.97143 6.99953 7.16293 7.28214 7.57283 7.69649 7.86392 8.54525 9.20832 9.84892 10.40727 11.25488 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.010506 C = 0.007852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.282113 B = 2664.546339 C = 3565.101890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 N -0.575 5.575 4 C -0.256 4.256 5 H 0.058 0.942 6 C 0.025 3.975 7 N -0.884 5.884 8 Si 0.893 3.107 9 H -0.290 1.290 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.173 3.827 13 C -0.114 4.114 14 C -0.096 4.096 15 C -0.141 4.141 16 C -0.086 4.086 17 C -0.106 4.106 18 C -0.168 4.168 19 C 0.125 3.875 20 F -0.122 7.122 21 H 0.043 0.957 22 H 0.055 0.945 23 H 0.030 0.970 24 H 0.041 0.959 25 H 0.032 0.968 26 H 0.254 0.746 27 H 0.110 0.890 28 H 0.036 0.964 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.510 -5.186 6.946 11.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.017 3.983 3 N -0.294 5.294 4 C -0.386 4.386 5 H 0.076 0.924 6 C -0.176 4.176 7 N -0.527 5.527 8 Si 0.723 3.277 9 H -0.217 1.217 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.047 3.953 13 C -0.119 4.119 14 C -0.115 4.115 15 C -0.159 4.159 16 C -0.086 4.086 17 C -0.163 4.163 18 C -0.187 4.187 19 C 0.105 3.895 20 F -0.100 7.100 21 H 0.062 0.938 22 H 0.074 0.926 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.127 0.873 28 H 0.055 0.945 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.400 -4.986 6.881 11.269 hybrid contribution 0.370 0.745 -0.871 1.204 sum 7.771 -4.241 6.011 10.701 Atomic orbital electron populations 1.22262 0.99555 0.98312 1.01965 1.20867 0.91983 0.87277 0.98147 1.43770 1.73831 1.10058 1.01767 1.18959 1.36917 0.92221 0.90483 0.92410 1.25006 0.96392 0.98520 0.97668 1.69935 1.32582 1.11200 1.38940 0.86464 0.79966 0.79856 0.81442 1.21711 1.21401 1.20191 1.20002 0.85907 1.02747 0.86676 1.21402 1.00034 0.95231 0.95192 1.20894 0.96150 0.97370 0.97121 1.20882 0.92665 1.00913 1.01488 1.19482 0.95598 0.96577 0.96980 1.20697 0.92706 1.01697 1.01200 1.20927 0.95258 1.01504 1.01001 1.17569 0.92873 0.89633 0.89429 1.91530 1.94475 1.62112 1.61858 0.93817 0.92610 0.95116 0.94059 0.94954 0.93559 0.87260 0.94524 0.86201 0.86660 0.91627 0.91845 0.91930 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.24 37.16 0.38 -2.87 16 2 C 0.14 3.08 6.39 -4.04 -0.03 3.05 16 3 N -0.57 -14.41 2.42 -174.61 -0.42 -14.83 16 4 C -0.26 -7.09 8.83 -15.06 -0.13 -7.22 16 5 H 0.06 1.63 7.92 -52.49 -0.42 1.21 16 6 C 0.02 0.69 3.88 -17.43 -0.07 0.62 16 7 N -0.88 -25.46 11.35 55.49 0.63 -24.83 16 8 Si 0.89 22.54 28.88 -169.99 -4.91 17.63 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 C 0.17 4.11 5.14 -5.19 -0.03 4.09 16 13 C -0.11 -2.42 5.47 -104.55 -0.57 -3.00 16 14 C -0.10 -1.69 9.67 -39.59 -0.38 -2.07 16 15 C -0.14 -2.17 9.70 -39.57 -0.38 -2.56 16 16 C -0.09 -1.33 5.88 -104.63 -0.62 -1.94 16 17 C -0.11 -1.21 10.01 36.00 0.36 -0.85 16 18 C -0.17 -3.01 9.68 -39.51 -0.38 -3.40 16 19 C 0.13 2.70 7.25 -39.42 -0.29 2.42 16 20 F -0.12 -2.99 14.09 2.25 0.03 -2.95 16 21 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.04 0.88 8.04 -51.93 -0.42 0.46 16 25 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 26 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.11 2.97 5.19 -51.93 -0.27 2.70 16 28 H 0.04 0.81 7.93 -51.93 -0.41 0.40 16 29 H 0.12 1.87 8.03 -52.49 -0.42 1.45 16 30 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.12 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 288.55 15.07 4.35 4.35 Total: -1.00 -29.51 288.55 -7.32 -36.83 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -4.87 Total: -2.45 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -2.13 Total: -13.73 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.21 Total: -39.66 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.03 Total: -2.95 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.91 Total: 17.63 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.51 -7.32 -36.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602449418.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.227 kcal (2) G-P(sol) polarization free energy of solvation -29.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds