Wall clock time and date at job start Mon Mar 30 2020 17:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47339 * 2 1 4 4 C 1.36932 * 120.00320 * 270.16873 * 3 2 1 5 5 H 1.08001 * 120.00253 * 323.78379 * 4 3 2 6 6 C 1.38815 * 120.00128 * 143.77568 * 4 3 2 7 7 N 1.31627 * 119.99770 * 338.71492 * 6 4 3 8 8 Si 1.86792 * 120.00006 * 158.71432 * 6 4 3 9 9 H 1.48501 * 109.47172 * 90.00262 * 8 6 4 10 10 H 1.48502 * 109.47136 * 209.99945 * 8 6 4 11 11 H 1.48497 * 109.47468 * 330.00422 * 8 6 4 12 12 C 1.46506 * 119.99772 * 89.89039 * 3 2 1 13 13 C 1.50698 * 109.46790 * 90.00110 * 12 3 2 14 14 C 1.38222 * 120.01635 * 259.72562 * 13 12 3 15 15 C 1.38220 * 120.02839 * 179.71942 * 14 13 12 16 16 C 1.38276 * 120.04997 * 0.55725 * 15 14 13 17 17 C 1.50699 * 119.98763 * 179.74137 * 16 15 14 18 18 C 1.38178 * 120.02222 * 359.72111 * 16 15 14 19 19 C 1.38442 * 120.01181 * 80.00269 * 13 12 3 20 20 F 1.35094 * 120.02554 * 0.02562 * 19 13 12 21 21 H 1.09003 * 109.47064 * 299.99558 * 1 2 3 22 22 H 1.08994 * 109.47363 * 59.99728 * 1 2 3 23 23 H 1.09002 * 109.47425 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46737 * 240.00006 * 2 1 3 25 25 H 1.08998 * 109.46976 * 120.00598 * 2 1 3 26 26 H 0.97001 * 119.99547 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.47009 * 210.00162 * 12 3 2 28 28 H 1.09003 * 109.47027 * 330.00839 * 12 3 2 29 29 H 1.08001 * 119.98519 * 0.02562 * 14 13 12 30 30 H 1.08000 * 119.97725 * 180.27192 * 15 14 13 31 31 H 1.08996 * 109.46818 * 269.98038 * 17 16 15 32 32 H 1.08999 * 109.46873 * 29.97662 * 17 16 15 33 33 H 1.08998 * 109.46996 * 149.97903 * 17 16 15 34 34 H 1.07998 * 120.00609 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2433 2.0279 -1.1858 5 1 2.6342 1.4830 -2.0325 6 6 1.9689 3.3838 -1.2999 7 7 1.1304 3.9582 -0.4635 8 14 2.7896 4.3933 -2.6403 9 1 1.9457 4.3732 -3.8620 10 1 2.9534 5.7940 -2.1749 11 1 4.1221 3.8154 -2.9496 12 6 2.2603 2.0725 1.2688 13 6 3.6827 1.8359 1.7065 14 6 3.9605 0.8849 2.6702 15 6 5.2657 0.6636 3.0677 16 6 6.2938 1.4012 2.5101 17 6 7.7158 1.1628 2.9487 18 6 6.0179 2.3565 1.5506 19 6 4.7113 2.5751 1.1475 20 9 4.4403 3.5092 0.2099 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 0.9390 4.9058 -0.5430 27 1 2.0935 3.1416 1.1375 28 1 1.5781 1.6888 2.0275 29 1 3.1579 0.3110 3.1094 30 1 5.4823 -0.0828 3.8176 31 1 7.9501 1.8138 3.7909 32 1 7.8333 0.1220 3.2502 33 1 8.3922 1.3803 2.1221 34 1 6.8212 2.9322 1.1150 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602449418.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:09 Heat of formation + Delta-G solvation = -24.160707 kcal Electronic energy + Delta-G solvation = -17258.430822 eV Core-core repulsion = 14491.438961 eV Total energy + Delta-G solvation = -2766.991861 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.50923 -40.04444 -37.70340 -34.00966 -33.69569 -31.32769 -30.80833 -28.93538 -26.30871 -24.88770 -23.58064 -22.36697 -21.45535 -18.79868 -17.63357 -17.34372 -16.75861 -16.39981 -16.29307 -15.60543 -15.53694 -14.87534 -14.46132 -14.31458 -14.08515 -14.00200 -13.33130 -13.22611 -13.09067 -12.84683 -12.60882 -12.50281 -12.37356 -12.20051 -11.99321 -11.81196 -11.68286 -11.51703 -10.51940 -9.67751 -9.22900 -8.59985 -7.84237 -5.41040 0.42285 0.43151 1.37290 1.41846 1.49886 2.49148 2.78373 3.29735 3.62193 3.82978 3.94260 4.05253 4.26779 4.38651 4.44425 4.55002 4.75290 4.78823 4.84336 4.87412 4.91187 4.99186 5.06424 5.27406 5.29756 5.40959 5.47184 5.52865 5.57419 5.66944 5.71579 5.81105 6.20052 6.47110 7.17094 7.86791 8.36967 9.13073 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.010506 C = 0.007852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.282113 B = 2664.546339 C = 3565.101890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.139 3.861 3 N -0.591 5.591 4 C -0.259 4.259 5 H 0.046 0.954 6 C -0.011 4.011 7 N -0.910 5.910 8 Si 0.935 3.065 9 H -0.283 1.283 10 H -0.292 1.292 11 H -0.278 1.278 12 C 0.179 3.821 13 C -0.141 4.141 14 C -0.094 4.094 15 C -0.129 4.129 16 C -0.074 4.074 17 C -0.105 4.105 18 C -0.174 4.174 19 C 0.082 3.918 20 F -0.151 7.151 21 H 0.035 0.965 22 H 0.025 0.975 23 H 0.069 0.931 24 H 0.039 0.961 25 H 0.057 0.943 26 H 0.249 0.751 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.141 0.859 30 H 0.159 0.841 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.366 -7.307 8.684 14.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.014 3.986 3 N -0.311 5.311 4 C -0.389 4.389 5 H 0.064 0.936 6 C -0.209 4.209 7 N -0.554 5.554 8 Si 0.764 3.236 9 H -0.210 1.210 10 H -0.218 1.218 11 H -0.204 1.204 12 C 0.053 3.947 13 C -0.144 4.144 14 C -0.113 4.113 15 C -0.147 4.147 16 C -0.075 4.075 17 C -0.161 4.161 18 C -0.193 4.193 19 C 0.063 3.937 20 F -0.130 7.130 21 H 0.054 0.946 22 H 0.044 0.956 23 H 0.087 0.913 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.158 0.842 30 H 0.177 0.823 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.270 -7.128 8.628 14.532 hybrid contribution -0.105 1.296 -1.286 1.829 sum 9.165 -5.832 7.343 13.112 Atomic orbital electron populations 1.22114 0.98577 1.00170 1.00012 1.21011 0.92717 0.85678 0.99227 1.43963 1.74667 1.11109 1.01365 1.19017 1.36107 0.92556 0.91261 0.93649 1.25432 0.97005 0.99224 0.99238 1.70040 1.34044 1.10869 1.40439 0.85801 0.79208 0.78568 0.80032 1.21027 1.21809 1.20363 1.19736 0.88163 1.00382 0.86401 1.21187 0.98163 0.97478 0.97594 1.21142 0.98142 0.96165 0.95814 1.21362 0.91345 1.00806 1.01203 1.20051 0.98123 0.94442 0.94876 1.20804 0.89604 1.03646 1.02079 1.21181 0.93978 1.02418 1.01707 1.18092 0.94798 0.90512 0.90345 1.91439 1.94846 1.63427 1.63293 0.94628 0.95600 0.91255 0.94228 0.92447 0.94116 0.91138 0.93787 0.84161 0.82349 0.89782 0.89476 0.91227 0.84767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.89 10.24 71.98 0.74 -5.15 16 2 C 0.14 5.85 6.39 86.38 0.55 6.40 16 3 N -0.59 -30.07 2.42 -706.34 -1.71 -31.79 16 4 C -0.26 -14.76 8.83 84.03 0.74 -14.01 16 5 H 0.05 2.64 7.92 -2.91 -0.02 2.62 16 6 C -0.01 -0.64 3.88 84.86 0.33 -0.31 16 7 N -0.91 -54.57 11.35 21.65 0.25 -54.32 16 8 Si 0.93 47.71 28.88 68.60 1.98 49.69 16 9 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 10 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 11 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 12 C 0.18 8.71 5.14 85.63 0.44 9.15 16 13 C -0.14 -5.93 5.47 -19.82 -0.11 -6.04 16 14 C -0.09 -3.05 9.67 22.26 0.22 -2.83 16 15 C -0.13 -3.39 9.70 22.27 0.22 -3.18 16 16 C -0.07 -2.02 5.88 -19.87 -0.12 -2.14 16 17 C -0.10 -1.85 10.01 71.24 0.71 -1.14 16 18 C -0.17 -6.01 9.68 22.31 0.22 -5.79 16 19 C 0.08 3.60 7.25 22.38 0.16 3.76 16 20 F -0.15 -7.77 14.09 44.97 0.63 -7.14 16 21 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.04 1.66 8.04 -2.39 -0.02 1.64 16 25 H 0.06 2.11 8.07 -2.39 -0.02 2.09 16 26 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 27 H 0.07 4.03 5.19 -2.39 -0.01 4.01 16 28 H 0.04 1.98 7.93 -2.39 -0.02 1.96 16 29 H 0.14 3.89 8.03 -2.91 -0.02 3.87 16 30 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.19 8.08 -2.39 -0.02 1.17 16 33 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 34 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -66.80 288.55 6.32 -60.49 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 1.07 Total: 4.35 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 4.10 Total: -21.28 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -1.46 Total: -86.11 kcal Atomic # 9 Polarization: -7.77 SS G_CDS: 0.63 Total: -7.14 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.98 Total: 49.69 kcal Total: -66.80 6.32 -60.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602449418.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.325 kcal (2) G-P(sol) polarization free energy of solvation -66.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds