Wall clock time and date at job start Mon Mar 30 2020 17:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46939 * 2 1 4 4 N 1.46497 * 109.47419 * 120.00348 * 2 1 3 5 5 C 1.46503 * 119.99913 * 317.31339 * 4 2 1 6 6 C 1.50699 * 109.47143 * 270.00171 * 5 4 2 7 7 H 1.07997 * 120.00093 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99602 * 180.02562 * 6 5 4 9 9 N 1.31524 * 119.99825 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00353 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.47108 * 89.99935 * 10 8 6 12 12 H 1.48503 * 109.47180 * 210.00304 * 10 8 6 13 13 H 1.48499 * 109.47162 * 330.00250 * 10 8 6 14 14 C 1.34778 * 120.00158 * 137.31780 * 4 2 1 15 15 O 1.21679 * 119.99823 * 187.36396 * 14 4 2 16 16 C 1.46758 * 119.99820 * 7.36212 * 14 4 2 17 17 C 1.36669 * 126.84495 * 201.12189 * 16 14 4 18 18 N 1.33320 * 107.78673 * 180.22509 * 17 16 14 19 19 C 1.30851 * 109.68579 * 359.76638 * 18 17 16 20 20 N 1.34499 * 109.16262 * 0.02562 * 19 18 17 21 21 H 0.97005 * 126.47093 * 179.97438 * 20 19 18 22 22 H 1.09005 * 109.47035 * 299.99183 * 1 2 3 23 23 H 1.08996 * 109.47885 * 59.99634 * 1 2 3 24 24 H 1.09004 * 109.46916 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47107 * 240.00559 * 2 1 3 26 26 H 1.09000 * 109.47308 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47625 * 300.00638 * 3 2 1 28 28 H 1.09006 * 109.47055 * 60.00788 * 3 2 1 29 29 H 1.09002 * 109.47029 * 30.00234 * 5 4 2 30 30 H 1.09000 * 109.47070 * 149.99836 * 5 4 2 31 31 H 0.96994 * 119.99558 * 180.02562 * 9 8 6 32 32 H 1.07997 * 126.10397 * 359.97438 * 17 16 14 33 33 H 1.07994 * 125.42139 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.3833 -0.4465 2.4935 6 6 2.0737 0.7022 3.1825 7 1 2.9029 1.2004 2.7022 8 6 1.6474 1.1166 4.4266 9 7 2.2502 2.1188 5.0282 10 14 0.2136 0.2545 5.2576 11 1 0.7230 -0.8711 6.0814 12 1 -0.5066 1.2185 6.1278 13 1 -0.7154 -0.2692 4.2243 14 6 3.0520 -1.5506 1.1029 15 8 3.3718 -2.2239 2.0646 16 6 3.7917 -1.6748 -0.1585 17 6 4.5645 -2.7300 -0.5549 18 7 5.0604 -2.4422 -1.7585 19 6 4.6359 -1.2647 -2.1401 20 7 3.8436 -0.7496 -1.1830 21 1 3.3960 0.1107 -1.2063 22 1 -0.3633 0.5137 0.8901 23 1 -0.3635 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 0.3320 -0.2011 2.3430 30 1 1.4627 -1.3413 3.1110 31 1 1.9505 2.4100 5.9035 32 1 4.7447 -3.6338 0.0082 33 1 4.8830 -0.7829 -3.0744 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609911578.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:43 Heat of formation + Delta-G solvation = 37.799939 kcal Electronic energy + Delta-G solvation = -17353.914652 eV Core-core repulsion = 14609.529568 eV Total energy + Delta-G solvation = -2744.385084 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.12395 -39.02498 -36.38866 -33.06670 -32.38728 -31.23763 -29.89458 -27.91180 -27.12379 -23.58067 -22.40071 -21.34034 -20.84161 -19.76951 -17.45045 -16.95751 -16.36779 -15.43758 -15.15259 -14.39234 -14.27732 -13.88490 -13.64342 -13.57402 -13.34225 -12.63274 -12.57360 -12.21544 -11.77098 -11.55626 -11.26722 -11.06287 -10.75845 -10.55292 -10.21282 -10.18431 -9.92904 -9.58592 -9.34751 -8.65100 -8.51201 -7.85923 -6.15879 -4.15058 1.60833 2.95656 3.09580 3.23896 3.29834 3.32932 3.62197 3.76872 4.33270 4.61332 4.83425 4.90209 5.16591 5.21365 5.25139 5.33012 5.57893 5.73319 5.84859 5.89172 5.96258 6.02063 6.29815 6.62300 6.66035 6.70921 6.88468 7.17702 7.29466 7.52497 7.93811 8.10290 8.37808 8.74739 8.86839 9.43939 10.96952 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.032169 B = 0.007919 C = 0.007375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.187789 B = 3534.852628 C = 3795.445922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.120 3.880 3 C -0.178 4.178 4 N -0.585 5.585 5 C 0.212 3.788 6 C -0.530 4.530 7 H 0.076 0.924 8 C 0.074 3.926 9 N -0.895 5.895 10 Si 0.874 3.126 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.585 3.415 15 O -0.524 6.524 16 C -0.066 4.066 17 C 0.049 3.951 18 N -0.501 5.501 19 C 0.194 3.806 20 N -0.557 5.557 21 H 0.426 0.574 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.265 0.735 32 H 0.180 0.820 33 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.405 -2.437 -14.440 14.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.016 3.984 3 C -0.236 4.236 4 N -0.317 5.317 5 C 0.092 3.908 6 C -0.568 4.568 7 H 0.094 0.906 8 C -0.129 4.129 9 N -0.533 5.533 10 Si 0.701 3.299 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.372 3.628 15 O -0.400 6.400 16 C -0.183 4.183 17 C -0.104 4.104 18 N -0.221 5.221 19 C -0.090 4.090 20 N -0.168 5.168 21 H 0.272 0.728 22 H 0.095 0.905 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.198 0.802 33 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -1.757 -3.187 -14.159 14.619 hybrid contribution -1.331 0.801 0.925 1.808 sum -3.088 -2.385 -13.234 13.797 Atomic orbital electron populations 1.22111 0.94186 1.02423 1.03079 1.21299 0.95789 0.93405 0.87956 1.22439 1.00564 0.96437 1.04184 1.47944 1.32525 1.41432 1.09801 1.19776 0.93501 0.97885 0.79667 1.21310 1.17847 1.14889 1.02793 0.90583 1.24845 0.96637 0.94724 0.96680 1.69890 1.41130 1.26854 1.15465 0.86883 0.82910 0.79898 0.80221 1.19809 1.21057 1.19053 1.16864 0.80150 0.80659 0.85178 1.90815 1.67223 1.44900 1.37016 1.21580 1.09631 0.94325 0.92785 1.22567 0.96202 0.98841 0.92796 1.70156 1.24939 1.13787 1.13176 1.25094 0.95029 0.92779 0.96069 1.44279 1.38547 1.18702 1.15249 0.72839 0.90495 0.91774 0.92386 0.90746 0.93140 0.92215 0.88515 0.94430 0.94238 0.92487 0.80246 0.77274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 8.70 37.16 0.32 -1.83 16 2 C 0.12 1.80 2.55 -67.93 -0.17 1.63 16 3 C -0.18 -2.55 8.05 37.16 0.30 -2.25 16 4 N -0.59 -11.69 2.38 -168.98 -0.40 -12.10 16 5 C 0.21 4.96 4.05 -5.19 -0.02 4.94 16 6 C -0.53 -14.47 8.69 -34.44 -0.30 -14.77 16 7 H 0.08 2.27 7.75 -52.49 -0.41 1.86 16 8 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 9 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 10 Si 0.87 20.97 27.47 -169.99 -4.67 16.30 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 14 C 0.59 12.29 7.61 -12.82 -0.10 12.19 16 15 O -0.52 -12.99 16.52 5.21 0.09 -12.90 16 16 C -0.07 -1.14 6.34 -82.15 -0.52 -1.66 16 17 C 0.05 0.80 11.72 -17.47 -0.20 0.59 16 18 N -0.50 -7.55 11.20 -14.43 -0.16 -7.71 16 19 C 0.19 2.29 13.01 -90.58 -1.18 1.11 16 20 N -0.56 -7.32 4.85 -10.79 -0.05 -7.37 16 21 H 0.43 4.83 4.39 -40.82 -0.18 4.65 16 22 H 0.08 1.17 6.43 -51.93 -0.33 0.84 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.97 4.89 -51.93 -0.25 0.71 16 26 H 0.05 0.73 6.97 -51.93 -0.36 0.37 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.10 1.73 7.02 -51.93 -0.36 1.37 16 29 H 0.04 0.83 4.80 -51.93 -0.25 0.58 16 30 H 0.04 1.01 6.76 -51.93 -0.35 0.66 16 31 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.18 2.75 8.06 -52.49 -0.42 2.33 16 33 H 0.21 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 271.17 15.07 4.09 4.09 Total: -1.00 -33.60 271.17 -6.09 -39.69 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -3.78 Total: 4.08 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.97 Total: 1.94 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.16 Total: -53.19 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.90 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -33.60 -6.09 -39.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609911578.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.494 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds