Wall clock time and date at job start Mon Mar 30 2020 17:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46491 * 109.47498 * 2 1 4 4 N 1.28445 * 125.19000 * 264.52856 * 3 2 1 5 5 C 1.30864 * 110.92972 * 180.02562 * 4 3 2 6 6 C 1.39679 * 107.86127 * 359.77539 * 5 4 3 7 7 C 1.36607 * 125.19391 * 84.55195 * 3 2 1 8 8 C 1.47162 * 126.87999 * 359.94631 * 7 3 2 9 9 O 1.21626 * 120.00357 * 5.37585 * 8 7 3 10 10 N 1.34774 * 119.99586 * 185.37600 * 8 7 3 11 11 C 1.46504 * 119.99934 * 174.73195 * 10 8 7 12 12 H 1.09000 * 109.47041 * 325.00746 * 11 10 8 13 13 C 1.53000 * 109.47094 * 85.00060 * 11 10 8 14 14 C 1.50697 * 109.47497 * 205.00306 * 11 10 8 15 15 H 1.08000 * 119.99625 * 359.97438 * 14 11 10 16 16 C 1.37872 * 119.99988 * 180.02562 * 14 11 10 17 17 N 1.31517 * 120.00327 * 359.97438 * 16 14 11 18 18 Si 1.86807 * 119.99866 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47164 * 89.99458 * 18 16 14 20 20 H 1.48505 * 109.46723 * 209.99719 * 18 16 14 21 21 H 1.48501 * 109.47069 * 329.99412 * 18 16 14 22 22 H 1.09005 * 109.46695 * 300.00097 * 1 2 3 23 23 H 1.08997 * 109.46531 * 59.99888 * 1 2 3 24 24 H 1.08990 * 109.47338 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46757 * 239.99494 * 2 1 3 26 26 H 1.09003 * 109.47190 * 120.00184 * 2 1 3 27 27 H 1.08003 * 126.07144 * 180.02562 * 5 4 3 28 28 H 1.07996 * 127.32297 * 180.23348 * 6 5 4 29 29 H 0.96998 * 120.00290 * 354.73967 * 10 8 7 30 30 H 1.08993 * 109.47148 * 180.02562 * 13 11 10 31 31 H 1.09000 * 109.47028 * 60.00079 * 13 11 10 32 32 H 1.09008 * 109.47175 * 300.00356 * 13 11 10 33 33 H 0.96995 * 119.99958 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.3596 2.0456 -1.0449 5 6 2.7539 3.2514 -0.7240 6 6 2.6534 3.3800 0.6632 7 6 2.1810 2.1587 1.1113 8 6 1.9036 1.7764 2.5051 9 8 1.5772 0.6349 2.7691 10 7 2.0112 2.6912 3.4889 11 6 1.6245 2.3430 4.8584 12 1 0.7729 1.6632 4.8338 13 6 2.7999 1.6625 5.5628 14 6 1.2466 3.5949 5.6074 15 1 1.2905 4.5540 5.1129 16 6 0.8458 3.5159 6.9242 17 7 0.7929 2.3480 7.5266 18 14 0.3766 5.0676 7.8524 19 1 -1.0763 5.3246 7.6847 20 1 0.6855 4.8941 9.2946 21 1 1.1479 6.2177 7.3159 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 3.0928 4.0134 -1.4103 28 1 2.8948 4.2474 1.2596 29 1 2.3446 3.5802 3.2902 30 1 2.5121 1.4031 6.5816 31 1 3.6517 2.3422 5.5875 32 1 3.0733 0.7569 5.0211 33 1 0.5106 2.2924 8.4529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613945215.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:53 Heat of formation + Delta-G solvation = 11.751216 kcal Electronic energy + Delta-G solvation = -16806.012551 eV Core-core repulsion = 14060.497909 eV Total energy + Delta-G solvation = -2745.514641 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.47600 -40.30349 -36.83619 -35.46873 -34.34791 -32.30015 -30.72041 -30.31457 -27.34369 -25.29342 -24.35433 -22.93940 -21.71632 -20.93655 -19.40874 -17.95600 -17.32201 -17.00322 -16.71139 -16.09305 -15.71773 -15.31053 -15.13077 -14.70798 -14.45629 -13.92425 -13.70521 -13.53250 -13.07238 -12.95847 -12.89735 -12.77285 -12.27016 -12.26293 -12.11919 -11.81099 -11.14027 -10.96662 -10.60013 -10.26292 -10.00709 -9.76270 -8.17928 -6.35354 0.29618 1.43435 1.47145 1.48511 1.58369 1.70368 2.27279 2.35789 2.55667 3.13223 3.59470 3.74147 4.00453 4.12044 4.23968 4.30181 4.61078 4.67114 4.74368 4.86068 4.90846 4.93816 5.07396 5.08974 5.39710 5.54599 5.58527 5.66615 5.79021 5.87418 6.07506 6.70391 6.80630 7.11196 7.26776 7.42172 8.88529 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.035983 B = 0.006070 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.954569 B = 4611.737788 C = 4956.662449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.110 3.890 3 N -0.266 5.266 4 N -0.298 5.298 5 C -0.002 4.002 6 C -0.184 4.184 7 C -0.055 4.055 8 C 0.573 3.427 9 O -0.586 6.586 10 N -0.686 5.686 11 C 0.275 3.725 12 H 0.003 0.997 13 C -0.135 4.135 14 C -0.548 4.548 15 H 0.076 0.924 16 C 0.016 3.984 17 N -0.917 5.917 18 Si 0.972 3.028 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.259 1.259 22 H 0.035 0.965 23 H 0.066 0.934 24 H 0.102 0.898 25 H 0.122 0.878 26 H 0.096 0.904 27 H 0.224 0.776 28 H 0.184 0.816 29 H 0.407 0.593 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.014 0.986 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.032 2.021 -13.683 14.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.009 4.009 3 N -0.054 5.054 4 N -0.130 5.130 5 C -0.177 4.177 6 C -0.213 4.213 7 C -0.184 4.184 8 C 0.359 3.641 9 O -0.467 6.467 10 N -0.335 5.335 11 C 0.172 3.828 12 H 0.021 0.979 13 C -0.194 4.194 14 C -0.586 4.586 15 H 0.094 0.906 16 C -0.184 4.184 17 N -0.555 5.555 18 Si 0.797 3.203 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.183 1.183 22 H 0.054 0.946 23 H 0.085 0.915 24 H 0.121 0.879 25 H 0.140 0.860 26 H 0.114 0.886 27 H 0.240 0.760 28 H 0.202 0.798 29 H 0.243 0.757 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.033 0.967 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.526 0.269 -14.198 14.424 hybrid contribution -0.115 1.221 1.455 1.903 sum 2.411 1.490 -12.743 13.055 Atomic orbital electron populations 1.22014 0.93095 1.04522 1.01616 1.22232 0.96552 0.76310 1.05824 1.46011 1.44654 1.12850 1.01924 1.73137 1.17672 1.08233 1.13969 1.24183 1.03834 0.94474 0.95224 1.22670 1.05273 0.96922 0.96423 1.21574 1.12467 0.94916 0.89409 1.17372 0.77645 0.85128 0.83978 1.90706 1.50895 1.20550 1.84590 1.46013 1.63672 1.15087 1.08692 1.18422 0.92535 0.95272 0.76534 0.97878 1.21912 0.98138 0.97320 1.02009 1.21532 1.46550 0.93377 0.97157 0.90637 1.25775 0.94808 0.99569 0.98232 1.70043 1.47154 1.25557 1.12753 0.85340 0.78460 0.79172 0.77350 1.20416 1.20987 1.18259 0.94609 0.91466 0.87890 0.85962 0.88574 0.75992 0.79837 0.75715 0.91263 0.94028 0.96722 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 10.24 71.98 0.74 -3.18 16 2 C 0.11 2.98 6.41 86.38 0.55 3.53 16 3 N -0.27 -8.27 3.35 -334.70 -1.12 -9.39 16 4 N -0.30 -8.45 11.90 -57.13 -0.68 -9.13 16 5 C 0.00 -0.04 12.03 85.19 1.02 0.98 16 6 C -0.18 -4.84 10.50 22.66 0.24 -4.60 16 7 C -0.06 -1.87 6.96 40.78 0.28 -1.59 16 8 C 0.57 23.66 7.75 86.59 0.67 24.33 16 9 O -0.59 -27.74 14.39 -4.11 -0.06 -27.80 16 10 N -0.69 -28.60 5.06 -449.63 -2.27 -30.88 16 11 C 0.28 14.05 2.52 44.24 0.11 14.16 16 12 H 0.00 0.20 7.66 -2.39 -0.02 0.18 16 13 C -0.13 -6.76 9.26 71.98 0.67 -6.10 16 14 C -0.55 -28.43 8.73 25.60 0.22 -28.20 16 15 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 16 C 0.02 0.87 5.30 84.65 0.45 1.31 16 17 N -0.92 -51.70 11.32 21.45 0.24 -51.46 16 18 Si 0.97 41.18 29.54 68.60 2.03 43.21 16 19 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 21 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 22 H 0.03 1.14 8.07 -2.38 -0.02 1.12 16 23 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.10 2.97 6.53 -2.39 -0.02 2.95 16 27 H 0.22 3.17 8.06 -2.91 -0.02 3.14 16 28 H 0.18 3.75 7.58 -2.91 -0.02 3.73 16 29 H 0.41 14.28 7.57 -92.71 -0.70 13.58 16 30 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 31 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.01 0.69 8.09 -2.38 -0.02 0.67 16 33 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -65.92 284.81 3.51 -62.41 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.42 Total: 22.39 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 4.96 Total: 0.66 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -3.83 Total: -100.86 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.06 Total: -27.80 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -65.92 3.51 -62.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613945215.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.158 kcal (2) G-P(sol) polarization free energy of solvation -65.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds