Wall clock time and date at job start Mon Mar 30 2020 17:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20758 * 119.99420 * 2 1 4 4 C 1.50693 * 120.00436 * 179.72189 * 2 1 3 5 5 C 1.53005 * 109.47318 * 300.00355 * 4 2 1 6 6 C 1.53008 * 109.46817 * 60.00130 * 4 2 1 7 7 N 1.46498 * 109.47457 * 179.97438 * 4 2 1 8 8 C 1.35312 * 125.86542 * 164.71823 * 7 4 2 9 9 C 1.35357 * 106.17235 * 179.90864 * 8 7 4 10 10 C 1.50697 * 126.75388 * 180.12744 * 9 8 7 11 11 C 1.50691 * 109.47462 * 125.28920 * 10 9 8 12 12 H 1.08007 * 120.00260 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00331 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99808 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00357 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47013 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47333 * 120.00410 * 15 13 11 18 18 H 1.48497 * 109.47221 * 240.00512 * 15 13 11 19 19 N 1.33774 * 106.49406 * 0.34792 * 9 8 7 20 20 N 1.28637 * 108.88831 * 359.77846 * 19 9 8 21 21 H 1.08995 * 109.47415 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46564 * 120.00459 * 1 2 3 23 23 H 1.08998 * 109.47012 * 239.99513 * 1 2 3 24 24 H 1.09006 * 109.46774 * 59.99649 * 5 4 2 25 25 H 1.08994 * 109.46817 * 179.97438 * 5 4 2 26 26 H 1.08993 * 109.46762 * 299.99672 * 5 4 2 27 27 H 1.08993 * 109.47364 * 60.00145 * 6 4 2 28 28 H 1.09003 * 109.47103 * 180.02562 * 6 4 2 29 29 H 1.09006 * 109.46889 * 300.00118 * 6 4 2 30 30 H 1.07999 * 126.91514 * 0.02562 * 8 7 4 31 31 H 1.09002 * 109.46954 * 245.29541 * 10 9 8 32 32 H 1.09006 * 109.46780 * 5.29082 * 10 9 8 33 33 H 0.97001 * 120.00034 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2606 -1.3050 0.0063 5 6 1.8910 -2.1013 1.2594 6 6 1.8910 -2.1133 -1.2391 7 7 3.7009 -1.0373 0.0044 8 6 4.6738 -1.9309 0.2976 9 6 5.8464 -1.2666 0.1716 10 6 7.2282 -1.8268 0.3900 11 6 8.0670 -1.5883 -0.8389 12 1 7.6422 -1.0812 -1.6927 13 6 9.3772 -2.0163 -0.8731 14 7 9.8947 -2.6333 0.1668 15 14 10.4173 -1.7200 -2.3961 16 1 9.6069 -1.0107 -3.4186 17 1 11.5960 -0.8912 -2.0371 18 1 10.8760 -3.0221 -2.9433 19 7 5.5371 -0.0135 -0.1803 20 7 4.2581 0.0899 -0.2710 21 1 -0.3634 1.0276 -0.0005 22 1 -0.3632 -0.5139 -0.8900 23 1 -0.3633 -0.5139 0.8899 24 1 0.8193 -2.3005 1.2603 25 1 2.4358 -3.0454 1.2637 26 1 2.1543 -1.5255 2.1466 27 1 2.1543 -1.5461 -2.1318 28 1 2.4357 -3.0575 -1.2343 29 1 0.8193 -2.3125 -1.2381 30 1 4.5414 -2.9664 0.5744 31 1 7.6890 -1.3337 1.2459 32 1 7.1599 -2.8978 0.5810 33 1 10.8164 -2.9348 0.1426 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000630604968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:43:02 Heat of formation + Delta-G solvation = 66.733931 kcal Electronic energy + Delta-G solvation = -16773.575792 eV Core-core repulsion = 14030.445380 eV Total energy + Delta-G solvation = -2743.130412 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.58995 -39.73373 -36.10955 -33.44142 -31.77783 -30.90143 -29.50424 -27.94495 -27.41963 -24.29123 -23.26473 -21.77190 -20.44758 -18.71601 -17.05570 -16.26110 -15.97878 -15.57218 -14.95910 -14.70414 -14.44308 -14.18482 -13.42791 -13.18455 -12.94744 -12.64878 -12.51903 -12.26854 -12.23359 -12.14515 -11.79780 -11.53910 -10.96877 -10.68055 -10.59028 -9.99350 -9.67686 -9.63066 -9.34021 -9.19121 -8.38754 -8.04860 -5.95278 -3.95254 1.72660 2.33873 2.62255 3.38003 3.44889 3.49016 3.51354 3.61967 4.23495 4.44508 4.55146 4.66157 4.95274 5.00419 5.03215 5.08553 5.25769 5.27498 5.33073 5.42198 5.51251 5.70810 5.77054 5.91329 6.17612 6.40118 7.09149 7.20766 7.43742 7.58115 7.67931 8.03113 8.42585 9.08706 9.44923 9.67413 11.15987 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.047421 B = 0.005482 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.313339 B = 5106.412315 C = 5245.138801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.340 3.660 3 O -0.394 6.394 4 C 0.126 3.874 5 C -0.155 4.155 6 C -0.155 4.155 7 N -0.301 5.301 8 C -0.088 4.088 9 C 0.035 3.965 10 C 0.092 3.908 11 C -0.500 4.500 12 H 0.059 0.941 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.896 3.104 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.285 1.285 19 N -0.268 5.268 20 N -0.073 5.073 21 H 0.088 0.912 22 H 0.095 0.905 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.178 0.822 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.778 -2.779 1.196 21.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.209 3.791 3 O -0.261 6.261 4 C 0.040 3.960 5 C -0.213 4.213 6 C -0.213 4.213 7 N -0.098 5.098 8 C -0.236 4.236 9 C -0.101 4.101 10 C 0.054 3.946 11 C -0.539 4.539 12 H 0.077 0.923 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.211 1.211 19 N -0.136 5.136 20 N -0.052 5.052 21 H 0.107 0.893 22 H 0.113 0.887 23 H 0.113 0.887 24 H 0.107 0.893 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.195 0.805 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.516 -0.793 0.848 21.547 hybrid contribution 0.679 -1.264 -0.480 1.512 sum -20.837 -2.057 0.367 20.942 Atomic orbital electron populations 1.22301 0.92740 1.05603 1.04697 1.24438 0.92110 0.89059 0.73497 1.90617 1.71119 1.33376 1.31023 1.21446 0.77342 0.97538 0.99700 1.22186 1.03363 1.00809 0.94950 1.22203 1.03070 1.00689 0.95378 1.47173 1.06418 1.08981 1.47195 1.23185 0.87949 0.98487 1.13937 1.23013 0.97945 0.89910 0.99234 1.17720 0.83215 0.95488 0.98218 1.21096 0.95929 1.36691 1.00199 0.92254 1.24971 0.97761 0.95303 0.96416 1.69959 1.14582 1.39926 1.29449 0.86463 0.80246 0.77734 0.83189 1.19714 1.20947 1.21125 1.75145 1.02815 1.19117 1.16537 1.78592 1.02836 1.05432 1.18300 0.89298 0.88672 0.88701 0.89304 0.89894 0.91000 0.91042 0.90076 0.89494 0.80454 0.94359 0.94630 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.21 9.59 36.01 0.35 -0.87 16 2 C 0.34 4.05 6.11 -29.04 -0.18 3.87 16 3 O -0.39 -6.86 15.16 6.00 0.09 -6.77 16 4 C 0.13 1.46 1.08 -132.97 -0.14 1.32 16 5 C -0.15 -1.24 8.07 37.16 0.30 -0.94 16 6 C -0.16 -1.37 8.51 37.16 0.32 -1.06 16 7 N -0.30 -5.39 3.17 -49.63 -0.16 -5.55 16 8 C -0.09 -1.68 10.62 -17.04 -0.18 -1.86 16 9 C 0.04 0.86 6.44 -82.77 -0.53 0.32 16 10 C 0.09 2.49 5.55 -29.04 -0.16 2.33 16 11 C -0.50 -14.84 9.09 -34.44 -0.31 -15.15 16 12 H 0.06 1.81 7.74 -52.48 -0.41 1.40 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 15 Si 0.90 22.55 29.54 -169.99 -5.02 17.53 16 16 H -0.27 -6.87 7.11 56.52 0.40 -6.46 16 17 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 19 N -0.27 -6.91 12.40 33.29 0.41 -6.49 16 20 N -0.07 -1.66 10.52 60.35 0.63 -1.03 16 21 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 22 H 0.09 0.37 7.39 -51.93 -0.38 -0.01 16 23 H 0.09 0.35 7.36 -51.93 -0.38 -0.03 16 24 H 0.09 0.37 7.28 -51.93 -0.38 -0.01 16 25 H 0.08 0.62 7.38 -51.93 -0.38 0.24 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.41 7.29 -51.93 -0.38 0.03 16 30 H 0.18 2.64 7.58 -52.49 -0.40 2.24 16 31 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.04 0.94 8.12 -51.93 -0.42 0.52 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 285.05 15.07 4.30 4.30 Total: -1.00 -37.41 285.05 -4.03 -41.45 By element: Atomic # 1 Polarization: -2.18 SS G_CDS: -4.38 Total: -6.56 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -0.65 Total: -10.49 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 1.63 Total: -39.45 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: 0.09 Total: -6.77 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -37.41 -4.03 -41.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000630604968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.181 kcal (2) G-P(sol) polarization free energy of solvation -37.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds