Wall clock time and date at job start Mon Mar 30 2020 17:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20758 * 119.99420 * 2 1 4 4 C 1.50693 * 120.00436 * 179.72189 * 2 1 3 5 5 C 1.53005 * 109.47318 * 300.00355 * 4 2 1 6 6 C 1.53008 * 109.46817 * 60.00130 * 4 2 1 7 7 N 1.46498 * 109.47457 * 179.97438 * 4 2 1 8 8 C 1.35312 * 125.86542 * 164.71823 * 7 4 2 9 9 C 1.35357 * 106.17235 * 179.90864 * 8 7 4 10 10 C 1.50697 * 126.75388 * 180.12744 * 9 8 7 11 11 C 1.50691 * 109.47462 * 125.28920 * 10 9 8 12 12 H 1.08007 * 120.00260 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00331 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99808 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00357 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47013 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47333 * 120.00410 * 15 13 11 18 18 H 1.48497 * 109.47221 * 240.00512 * 15 13 11 19 19 N 1.33774 * 106.49406 * 0.34792 * 9 8 7 20 20 N 1.28637 * 108.88831 * 359.77846 * 19 9 8 21 21 H 1.08995 * 109.47415 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46564 * 120.00459 * 1 2 3 23 23 H 1.08998 * 109.47012 * 239.99513 * 1 2 3 24 24 H 1.09006 * 109.46774 * 59.99649 * 5 4 2 25 25 H 1.08994 * 109.46817 * 179.97438 * 5 4 2 26 26 H 1.08993 * 109.46762 * 299.99672 * 5 4 2 27 27 H 1.08993 * 109.47364 * 60.00145 * 6 4 2 28 28 H 1.09003 * 109.47103 * 180.02562 * 6 4 2 29 29 H 1.09006 * 109.46889 * 300.00118 * 6 4 2 30 30 H 1.07999 * 126.91514 * 0.02562 * 8 7 4 31 31 H 1.09002 * 109.46954 * 245.29541 * 10 9 8 32 32 H 1.09006 * 109.46780 * 5.29082 * 10 9 8 33 33 H 0.97001 * 120.00034 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2606 -1.3050 0.0063 5 6 1.8910 -2.1013 1.2594 6 6 1.8910 -2.1133 -1.2391 7 7 3.7009 -1.0373 0.0044 8 6 4.6738 -1.9309 0.2976 9 6 5.8464 -1.2666 0.1716 10 6 7.2282 -1.8268 0.3900 11 6 8.0670 -1.5883 -0.8389 12 1 7.6422 -1.0812 -1.6927 13 6 9.3772 -2.0163 -0.8731 14 7 9.8947 -2.6333 0.1668 15 14 10.4173 -1.7200 -2.3961 16 1 9.6069 -1.0107 -3.4186 17 1 11.5960 -0.8912 -2.0371 18 1 10.8760 -3.0221 -2.9433 19 7 5.5371 -0.0135 -0.1803 20 7 4.2581 0.0899 -0.2710 21 1 -0.3634 1.0276 -0.0005 22 1 -0.3632 -0.5139 -0.8900 23 1 -0.3633 -0.5139 0.8899 24 1 0.8193 -2.3005 1.2603 25 1 2.4358 -3.0454 1.2637 26 1 2.1543 -1.5255 2.1466 27 1 2.1543 -1.5461 -2.1318 28 1 2.4357 -3.0575 -1.2343 29 1 0.8193 -2.3125 -1.2381 30 1 4.5414 -2.9664 0.5744 31 1 7.6890 -1.3337 1.2459 32 1 7.1599 -2.8978 0.5810 33 1 10.8164 -2.9348 0.1426 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000630604968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:43:01 Heat of formation + Delta-G solvation = 38.914546 kcal Electronic energy + Delta-G solvation = -16774.782131 eV Core-core repulsion = 14030.445380 eV Total energy + Delta-G solvation = -2744.336751 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.15766 -40.77710 -37.20558 -35.52328 -33.37219 -32.56075 -30.26651 -29.47862 -28.49043 -25.68658 -25.05554 -23.10200 -22.10955 -19.92178 -18.48519 -18.15665 -17.27327 -16.69366 -16.45524 -16.03149 -15.80347 -15.39917 -14.61308 -14.45170 -14.04419 -13.89377 -13.62215 -13.49606 -13.33112 -12.90176 -12.85640 -12.77925 -12.62646 -12.60526 -12.45819 -11.85767 -11.67598 -11.38459 -10.91380 -10.62723 -10.50635 -9.85584 -8.20444 -6.29077 0.76747 0.89221 1.37701 1.39841 1.43310 1.53275 1.78801 2.43327 2.64064 3.11987 3.43881 3.64338 3.69771 4.00881 4.23282 4.39464 4.48966 4.52347 4.57261 4.62360 4.69807 4.71749 4.80235 4.97363 5.13498 5.23254 5.29380 5.43932 5.53109 5.75295 5.80113 6.21759 6.48619 6.78765 7.37533 7.76370 8.90834 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.047421 B = 0.005482 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.313339 B = 5106.412315 C = 5245.138801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.339 3.661 3 O -0.467 6.467 4 C 0.101 3.899 5 C -0.152 4.152 6 C -0.152 4.152 7 N -0.282 5.282 8 C -0.054 4.054 9 C -0.010 4.010 10 C 0.104 3.896 11 C -0.524 4.524 12 H 0.040 0.960 13 C 0.010 3.990 14 N -0.926 5.926 15 Si 0.963 3.037 16 H -0.277 1.277 17 H -0.276 1.276 18 H -0.267 1.267 19 N -0.324 5.324 20 N -0.097 5.097 21 H 0.082 0.918 22 H 0.129 0.871 23 H 0.132 0.868 24 H 0.141 0.859 25 H 0.093 0.907 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.142 0.858 30 H 0.225 0.775 31 H 0.005 0.995 32 H 0.037 0.963 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.641 -4.961 0.764 25.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.213 3.787 3 O -0.338 6.338 4 C 0.018 3.982 5 C -0.210 4.210 6 C -0.209 4.209 7 N -0.079 5.079 8 C -0.203 4.203 9 C -0.148 4.148 10 C 0.065 3.935 11 C -0.562 4.562 12 H 0.059 0.941 13 C -0.189 4.189 14 N -0.566 5.566 15 Si 0.788 3.212 16 H -0.202 1.202 17 H -0.202 1.202 18 H -0.192 1.192 19 N -0.190 5.190 20 N -0.075 5.075 21 H 0.101 0.899 22 H 0.147 0.853 23 H 0.150 0.850 24 H 0.159 0.841 25 H 0.112 0.888 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.160 0.840 30 H 0.241 0.759 31 H 0.023 0.977 32 H 0.055 0.945 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.435 -2.980 0.415 24.619 hybrid contribution 1.398 -0.644 -0.303 1.569 sum -23.037 -3.624 0.112 23.320 Atomic orbital electron populations 1.22381 0.87562 1.06465 1.07878 1.25452 0.94743 0.87927 0.70594 1.90620 1.72898 1.35500 1.34823 1.22431 0.73448 0.99022 1.03327 1.22334 1.06909 0.99979 0.91755 1.22312 1.06666 0.99584 0.92369 1.47770 1.09030 1.07262 1.43836 1.23595 0.86422 0.99806 1.10513 1.22749 0.98399 0.90725 1.02895 1.17379 0.84870 0.95141 0.96062 1.21280 0.97101 1.37178 1.00673 0.94148 1.25783 0.98740 0.94743 0.99589 1.70043 1.15237 1.40218 1.31124 0.85435 0.78299 0.78313 0.79183 1.20176 1.20168 1.19185 1.75046 1.04735 1.20636 1.18632 1.78494 1.01834 1.07532 1.19688 0.89903 0.85314 0.84998 0.84053 0.88798 0.92708 0.93613 0.89534 0.84010 0.75857 0.97660 0.94492 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 9.59 71.24 0.68 -0.80 16 2 C 0.34 7.44 6.11 29.10 0.18 7.61 16 3 O -0.47 -16.64 15.16 -1.44 -0.02 -16.66 16 4 C 0.10 2.06 1.08 2.86 0.00 2.06 16 5 C -0.15 -1.73 8.07 71.98 0.58 -1.15 16 6 C -0.15 -2.07 8.51 71.98 0.61 -1.46 16 7 N -0.28 -9.97 3.17 -310.92 -0.99 -10.95 16 8 C -0.05 -2.01 10.62 83.49 0.89 -1.13 16 9 C -0.01 -0.49 6.44 41.60 0.27 -0.22 16 10 C 0.10 5.89 5.55 29.10 0.16 6.05 16 11 C -0.52 -32.27 9.09 25.60 0.23 -32.04 16 12 H 0.04 2.58 7.74 -2.91 -0.02 2.56 16 13 C 0.01 0.58 5.46 84.65 0.46 1.04 16 14 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 15 Si 0.96 46.90 29.54 68.60 2.03 48.93 16 16 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 N -0.32 -17.60 12.40 -48.60 -0.60 -18.20 16 20 N -0.10 -4.59 10.52 37.02 0.39 -4.20 16 21 H 0.08 0.84 8.12 -2.39 -0.02 0.82 16 22 H 0.13 0.23 7.39 -2.39 -0.02 0.21 16 23 H 0.13 0.14 7.36 -2.39 -0.02 0.12 16 24 H 0.14 0.15 7.28 -2.38 -0.02 0.13 16 25 H 0.09 0.92 7.38 -2.39 -0.02 0.90 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.14 0.38 7.29 -2.38 -0.02 0.37 16 30 H 0.22 5.95 7.58 -2.91 -0.02 5.93 16 31 H 0.01 0.32 8.14 -2.39 -0.02 0.31 16 32 H 0.04 2.02 8.12 -2.38 -0.02 2.00 16 33 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -89.84 285.05 6.26 -83.58 By element: Atomic # 1 Polarization: -7.23 SS G_CDS: 1.10 Total: -6.12 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 4.07 Total: -20.03 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -0.91 Total: -89.69 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.02 Total: -16.66 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -89.84 6.26 -83.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000630604968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.490 kcal (2) G-P(sol) polarization free energy of solvation -89.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds