Wall clock time and date at job start Mon Mar 30 2020 17:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.34946 * 126.03695 * 84.71491 * 4 2 1 6 6 C 1.35317 * 107.74396 * 179.84143 * 5 4 2 7 7 C 1.39864 * 107.92273 * 0.41968 * 6 5 4 8 8 C 1.50703 * 125.90253 * 179.72381 * 7 6 5 9 9 C 1.50693 * 109.47307 * 125.00096 * 8 7 6 10 10 O 1.21295 * 120.00352 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00033 * 180.02562 * 9 8 7 12 12 C 1.37094 * 120.00249 * 180.02562 * 11 9 8 13 13 H 1.07995 * 119.99830 * 359.97438 * 12 11 9 14 14 C 1.38955 * 120.00063 * 179.97438 * 12 11 9 15 15 N 1.31408 * 120.00126 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99892 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.47175 * 90.00138 * 16 14 12 18 18 H 1.48498 * 109.46760 * 210.00309 * 16 14 12 19 19 H 1.48504 * 109.47080 * 329.99880 * 16 14 12 20 20 N 1.30839 * 108.19848 * 359.73815 * 7 6 5 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 26 26 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 27 27 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 28 28 H 1.07997 * 126.12996 * 359.97438 * 5 4 2 29 29 H 1.08002 * 126.03809 * 180.16600 * 6 5 4 30 30 H 1.09002 * 109.46447 * 244.99777 * 8 7 6 31 31 H 1.09004 * 109.46816 * 4.99511 * 8 7 6 32 32 H 0.97005 * 119.99680 * 359.97438 * 11 9 8 33 33 H 0.96995 * 120.00194 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1882 -0.1405 -2.4167 6 6 2.6566 -1.1050 -3.2422 7 6 2.7681 -2.2872 -2.5031 8 6 3.2457 -3.6164 -3.0289 9 6 4.3913 -4.1090 -2.1828 10 8 4.7819 -3.4458 -1.2454 11 7 4.9825 -5.2860 -2.4684 12 6 6.0244 -5.7344 -1.6984 13 1 6.3716 -5.1444 -0.8633 14 6 6.6336 -6.9482 -1.9926 15 7 7.6325 -7.3778 -1.2548 16 14 6.0324 -7.9692 -3.4368 17 1 6.7778 -7.5817 -4.6612 18 1 6.2598 -9.4091 -3.1536 19 1 4.5816 -7.7285 -3.6433 20 7 2.3857 -2.0399 -1.2766 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 3.1299 1.4426 -0.0005 28 1 1.9883 0.8861 -2.6859 29 1 2.8977 -0.9843 -4.2880 30 1 2.4289 -4.3371 -2.9898 31 1 3.5791 -3.5005 -4.0602 32 1 4.6703 -5.8162 -3.2184 33 1 8.0575 -8.2252 -1.4599 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740742577.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:43:07 Heat of formation + Delta-G solvation = 38.676470 kcal Electronic energy + Delta-G solvation = -16320.614856 eV Core-core repulsion = 13576.267781 eV Total energy + Delta-G solvation = -2744.347074 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.94791 -38.16792 -35.79036 -33.87524 -31.71963 -31.27368 -29.64528 -27.87913 -27.46894 -24.50037 -22.57612 -20.11069 -19.84806 -19.02322 -18.01692 -16.92255 -15.78509 -15.03872 -14.86886 -14.47838 -14.30289 -13.82753 -13.34821 -13.20803 -12.89022 -12.66472 -12.44510 -12.36776 -12.16789 -11.80022 -11.61577 -11.45978 -11.21976 -11.05480 -10.52047 -10.11658 -9.89023 -9.47105 -8.87947 -8.43865 -8.19366 -8.07926 -6.22183 -3.72967 2.24468 2.71698 3.10379 3.13750 3.16145 3.21919 3.88267 4.18466 4.42631 4.73248 4.77041 4.90788 4.96885 5.07898 5.23824 5.30736 5.36776 5.44239 5.62060 5.66514 5.82284 5.90792 5.93444 5.98876 6.07107 6.18015 6.40232 6.99978 7.34053 7.66952 8.17492 8.24460 8.69902 9.04947 9.52424 9.94725 10.91377 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.049263 B = 0.004994 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.239834 B = 5604.955954 C = 5849.620562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 C -0.163 4.163 4 N -0.373 5.373 5 C 0.043 3.957 6 C -0.269 4.269 7 C 0.096 3.904 8 C -0.058 4.058 9 C 0.457 3.543 10 O -0.560 6.560 11 N -0.594 5.594 12 C -0.302 4.302 13 H 0.118 0.882 14 C 0.040 3.960 15 N -0.886 5.886 16 Si 0.880 3.120 17 H -0.271 1.271 18 H -0.278 1.278 19 H -0.268 1.268 20 N -0.257 5.257 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.060 0.940 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.165 0.835 29 H 0.143 0.857 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.371 0.629 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.475 13.918 -4.214 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.053 3.947 3 C -0.221 4.221 4 N -0.156 5.156 5 C -0.102 4.102 6 C -0.298 4.298 7 C -0.072 4.072 8 C -0.100 4.100 9 C 0.242 3.758 10 O -0.441 6.441 11 N -0.234 5.234 12 C -0.430 4.430 13 H 0.136 0.864 14 C -0.163 4.163 15 N -0.526 5.526 16 Si 0.706 3.294 17 H -0.197 1.197 18 H -0.203 1.203 19 H -0.194 1.194 20 N -0.078 5.078 21 H 0.084 0.916 22 H 0.092 0.908 23 H 0.079 0.921 24 H 0.120 0.880 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.182 0.818 29 H 0.161 0.839 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.203 0.797 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.275 13.813 -2.217 19.988 hybrid contribution -0.157 -0.550 -1.950 2.033 sum -14.432 13.263 -4.168 20.039 Atomic orbital electron populations 1.22226 0.94021 1.03223 1.02592 1.21166 0.94383 0.92614 0.86573 1.22175 1.02599 0.94178 1.03142 1.48845 1.50915 1.07858 1.07957 1.22266 1.02534 0.99477 0.85933 1.21313 1.14526 0.92688 1.01291 1.21629 0.98715 0.95664 0.91159 1.20002 0.98222 0.91981 0.99796 1.19597 0.85800 0.82974 0.87449 1.90596 1.65588 1.56773 1.31167 1.42190 1.32436 1.19106 1.29653 1.19432 1.07480 1.04419 1.11701 0.86439 1.25025 0.96351 0.96942 0.97949 1.69624 1.22650 1.21520 1.38816 0.86666 0.79050 0.80781 0.82895 1.19657 1.20307 1.19378 1.77516 1.19212 0.91967 1.19058 0.91614 0.90782 0.92136 0.88002 0.91772 0.90261 0.91342 0.81790 0.83928 0.88743 0.88404 0.79655 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.52 37.16 0.35 -1.12 16 2 C 0.15 1.78 3.93 -67.93 -0.27 1.51 16 3 C -0.16 -1.38 8.84 37.16 0.33 -1.05 16 4 N -0.37 -5.79 3.52 -54.87 -0.19 -5.99 16 5 C 0.04 0.59 10.59 -17.22 -0.18 0.41 16 6 C -0.27 -4.12 10.72 -40.01 -0.43 -4.55 16 7 C 0.10 1.81 6.01 -82.41 -0.50 1.31 16 8 C -0.06 -1.04 6.28 -29.04 -0.18 -1.23 16 9 C 0.46 11.09 7.77 -10.99 -0.09 11.00 16 10 O -0.56 -16.18 15.14 5.54 0.08 -16.10 16 11 N -0.59 -14.78 5.09 -10.97 -0.06 -14.84 16 12 C -0.30 -8.85 10.16 -14.93 -0.15 -9.00 16 13 H 0.12 3.95 7.39 -52.49 -0.39 3.56 16 14 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 15 N -0.89 -26.58 13.96 55.50 0.77 -25.81 16 16 Si 0.88 19.86 27.74 -169.99 -4.71 15.14 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 20 N -0.26 -5.17 11.92 33.67 0.40 -4.77 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.06 0.46 7.16 -51.93 -0.37 0.08 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.16 1.53 7.27 -52.49 -0.38 1.15 16 29 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 31 H 0.10 1.43 8.12 -51.93 -0.42 1.01 16 32 H 0.37 8.01 5.76 -40.82 -0.24 7.77 16 33 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 286.49 15.07 4.32 4.32 Total: -1.00 -36.57 286.49 -4.94 -41.51 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -4.35 Total: 8.22 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.21 Total: -1.69 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.93 Total: -51.41 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.08 Total: -16.10 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.71 Total: 15.14 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -36.57 -4.94 -41.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740742577.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.191 kcal (2) G-P(sol) polarization free energy of solvation -36.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds