Wall clock time and date at job start Mon Mar 30 2020 17:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.34946 * 126.03695 * 84.71491 * 4 2 1 6 6 C 1.35317 * 107.74396 * 179.84143 * 5 4 2 7 7 C 1.39864 * 107.92273 * 0.41968 * 6 5 4 8 8 C 1.50703 * 125.90253 * 179.72381 * 7 6 5 9 9 C 1.50693 * 109.47307 * 125.00096 * 8 7 6 10 10 O 1.21295 * 120.00352 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00033 * 180.02562 * 9 8 7 12 12 C 1.37094 * 120.00249 * 180.02562 * 11 9 8 13 13 H 1.07995 * 119.99830 * 359.97438 * 12 11 9 14 14 C 1.38955 * 120.00063 * 179.97438 * 12 11 9 15 15 N 1.31408 * 120.00126 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99892 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.47175 * 90.00138 * 16 14 12 18 18 H 1.48498 * 109.46760 * 210.00309 * 16 14 12 19 19 H 1.48504 * 109.47080 * 329.99880 * 16 14 12 20 20 N 1.30839 * 108.19848 * 359.73815 * 7 6 5 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 26 26 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 27 27 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 28 28 H 1.07997 * 126.12996 * 359.97438 * 5 4 2 29 29 H 1.08002 * 126.03809 * 180.16600 * 6 5 4 30 30 H 1.09002 * 109.46447 * 244.99777 * 8 7 6 31 31 H 1.09004 * 109.46816 * 4.99511 * 8 7 6 32 32 H 0.97005 * 119.99680 * 359.97438 * 11 9 8 33 33 H 0.96995 * 120.00194 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1882 -0.1405 -2.4167 6 6 2.6566 -1.1050 -3.2422 7 6 2.7681 -2.2872 -2.5031 8 6 3.2457 -3.6164 -3.0289 9 6 4.3913 -4.1090 -2.1828 10 8 4.7819 -3.4458 -1.2454 11 7 4.9825 -5.2860 -2.4684 12 6 6.0244 -5.7344 -1.6984 13 1 6.3716 -5.1444 -0.8633 14 6 6.6336 -6.9482 -1.9926 15 7 7.6325 -7.3778 -1.2548 16 14 6.0324 -7.9692 -3.4368 17 1 6.7778 -7.5817 -4.6612 18 1 6.2598 -9.4091 -3.1536 19 1 4.5816 -7.7285 -3.6433 20 7 2.3857 -2.0399 -1.2766 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 3.1299 1.4426 -0.0005 28 1 1.9883 0.8861 -2.6859 29 1 2.8977 -0.9843 -4.2880 30 1 2.4289 -4.3371 -2.9898 31 1 3.5791 -3.5005 -4.0602 32 1 4.6703 -5.8162 -3.2184 33 1 8.0575 -8.2252 -1.4599 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740742577.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:43:07 Heat of formation + Delta-G solvation = 10.756486 kcal Electronic energy + Delta-G solvation = -16321.825557 eV Core-core repulsion = 13576.267781 eV Total energy + Delta-G solvation = -2745.557776 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.12487 -40.10974 -36.78637 -35.96055 -33.78086 -32.70455 -30.81421 -29.23825 -28.19356 -26.50438 -23.64096 -21.71926 -20.99893 -20.82736 -19.82809 -17.93195 -17.66637 -16.76747 -16.17866 -15.87632 -15.65359 -15.19812 -14.80031 -14.46353 -14.36314 -14.25213 -13.64937 -13.53521 -13.24033 -13.02842 -12.97222 -12.73352 -12.40139 -12.32137 -12.04378 -11.96446 -11.49726 -11.34704 -10.47429 -10.23352 -10.08007 -9.37318 -8.40191 -6.01235 1.10907 1.32538 1.38079 1.47075 1.69843 1.90571 1.99786 2.25376 3.04497 3.17437 3.53403 3.84279 3.96426 4.00569 4.10736 4.33755 4.39484 4.59280 4.62641 4.66993 4.78499 4.86574 4.91316 4.96981 5.15514 5.20462 5.26176 5.55962 5.78948 5.96010 6.34117 6.60427 6.89183 6.95981 7.40629 7.99405 8.78013 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.049263 B = 0.004994 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.239834 B = 5604.955954 C = 5849.620562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.140 3.860 3 C -0.154 4.154 4 N -0.375 5.375 5 C 0.056 3.944 6 C -0.283 4.283 7 C 0.066 3.934 8 C -0.046 4.046 9 C 0.453 3.547 10 O -0.616 6.616 11 N -0.591 5.591 12 C -0.330 4.330 13 H 0.049 0.951 14 C -0.016 4.016 15 N -0.938 5.938 16 Si 0.968 3.032 17 H -0.253 1.253 18 H -0.275 1.275 19 H -0.230 1.230 20 N -0.324 5.324 21 H 0.041 0.959 22 H 0.101 0.899 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.047 0.953 28 H 0.212 0.788 29 H 0.172 0.828 30 H 0.120 0.880 31 H 0.141 0.859 32 H 0.392 0.608 33 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.859 14.874 -7.252 23.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.039 3.961 3 C -0.212 4.212 4 N -0.158 5.158 5 C -0.090 4.090 6 C -0.312 4.312 7 C -0.100 4.100 8 C -0.087 4.087 9 C 0.241 3.759 10 O -0.500 6.500 11 N -0.232 5.232 12 C -0.459 4.459 13 H 0.067 0.933 14 C -0.214 4.214 15 N -0.578 5.578 16 Si 0.787 3.213 17 H -0.177 1.177 18 H -0.200 1.200 19 H -0.153 1.153 20 N -0.146 5.146 21 H 0.060 0.940 22 H 0.120 0.880 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.124 0.876 27 H 0.067 0.933 28 H 0.229 0.771 29 H 0.189 0.811 30 H 0.138 0.862 31 H 0.159 0.841 32 H 0.228 0.772 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.683 14.778 -5.261 22.899 hybrid contribution 0.614 -0.717 -0.843 1.265 sum -16.069 14.061 -6.103 22.207 Atomic orbital electron populations 1.22157 0.91844 1.02316 1.04662 1.21552 0.96125 0.93754 0.84620 1.22159 1.01271 0.92148 1.05601 1.49186 1.50242 1.06718 1.09694 1.23019 1.00249 1.01122 0.84627 1.21704 1.15005 0.91615 1.02836 1.21952 0.99459 0.96956 0.91627 1.20034 0.95944 0.92495 1.00242 1.20838 0.86253 0.81850 0.86972 1.90569 1.67431 1.58233 1.33797 1.41994 1.31599 1.19807 1.29851 1.18992 1.10136 1.05098 1.11646 0.93259 1.26159 0.95757 0.97739 1.01778 1.69812 1.24213 1.22427 1.41381 0.85326 0.80677 0.77673 0.77603 1.17743 1.20012 1.15329 1.77391 1.21460 0.95132 1.20606 0.93982 0.88036 0.90641 0.90551 0.89467 0.87640 0.93335 0.77096 0.81080 0.86210 0.84125 0.77225 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.52 71.98 0.69 -1.81 16 2 C 0.14 3.14 3.93 44.99 0.18 3.31 16 3 C -0.15 -2.25 8.84 71.98 0.64 -1.61 16 4 N -0.38 -11.43 3.52 -327.49 -1.15 -12.58 16 5 C 0.06 1.37 10.59 83.54 0.89 2.25 16 6 C -0.28 -7.99 10.72 21.99 0.24 -7.75 16 7 C 0.07 2.45 6.01 43.10 0.26 2.71 16 8 C -0.05 -1.58 6.28 29.10 0.18 -1.39 16 9 C 0.45 22.38 7.77 87.65 0.68 23.06 16 10 O -0.62 -37.62 15.14 -3.08 -0.05 -37.66 16 11 N -0.59 -29.52 5.09 -306.99 -1.56 -31.09 16 12 C -0.33 -20.26 10.16 84.04 0.85 -19.41 16 13 H 0.05 3.62 7.39 -2.91 -0.02 3.60 16 14 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 15 N -0.94 -58.31 13.96 21.66 0.30 -58.01 16 16 Si 0.97 39.89 27.74 68.60 1.90 41.80 16 17 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 18 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.23 -8.01 6.52 99.48 0.65 -7.36 16 20 N -0.32 -13.31 11.92 -47.38 -0.56 -13.87 16 21 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.09 0.88 7.16 -2.39 -0.02 0.86 16 26 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.21 2.92 7.27 -2.91 -0.02 2.90 16 29 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 30 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 31 H 0.14 3.59 8.12 -2.38 -0.02 3.57 16 32 H 0.39 15.98 5.76 -92.70 -0.53 15.44 16 33 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -88.58 286.49 4.46 -84.12 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.52 Total: 28.39 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 5.06 Total: -1.10 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -2.98 Total: -115.55 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -0.05 Total: -37.66 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.90 Total: 41.80 kcal Total: -88.58 4.46 -84.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740742577.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.878 kcal (2) G-P(sol) polarization free energy of solvation -88.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds