Wall clock time and date at job start Mon Mar 30 2020 17:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46577 * 2 1 4 4 N 1.46501 * 109.46616 * 119.99710 * 2 1 3 5 5 C 1.34774 * 119.99892 * 275.00085 * 4 2 1 6 6 O 1.21593 * 120.00192 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99921 * 180.02562 * 5 4 2 8 8 C 1.46507 * 119.99788 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.46572 * 179.97438 * 8 7 5 10 10 H 1.07994 * 120.00615 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99487 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00150 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99627 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46921 * 59.99949 * 13 11 9 15 15 H 1.48505 * 109.46696 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47255 * 299.99590 * 13 11 9 17 17 C 1.50690 * 109.47565 * 239.99713 * 2 1 3 18 18 C 1.34858 * 125.89120 * 275.04276 * 17 2 1 19 19 C 1.40900 * 107.41627 * 179.73386 * 18 17 2 20 20 C 1.34850 * 107.41621 * 0.37840 * 19 18 17 21 21 N 1.36341 * 125.89174 * 94.99929 * 17 2 1 22 22 H 0.97003 * 125.63345 * 0.05952 * 21 17 2 23 23 H 1.08992 * 109.47592 * 300.00132 * 1 2 3 24 24 H 1.09004 * 109.46798 * 60.00919 * 1 2 3 25 25 H 1.09004 * 109.47028 * 179.97438 * 1 2 3 26 26 H 0.97002 * 120.00437 * 95.00713 * 4 2 1 27 27 H 0.97001 * 120.00078 * 359.97438 * 7 5 4 28 28 H 1.09001 * 109.47072 * 299.99515 * 8 7 5 29 29 H 1.09000 * 109.46881 * 59.99884 * 8 7 5 30 30 H 0.97003 * 119.99855 * 180.02562 * 12 11 9 31 31 H 1.07991 * 126.29023 * 359.94006 * 18 17 2 32 32 H 1.07999 * 126.29093 * 180.24309 * 19 18 17 33 33 H 1.08002 * 125.89234 * 179.89015 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1469 -0.0182 2.3572 6 8 1.8573 1.1615 2.4118 7 7 2.5965 -0.6534 3.4576 8 6 2.7358 0.0775 4.7197 9 6 3.2523 -0.8546 5.7854 10 1 3.4560 -1.8879 5.5466 11 6 3.4638 -0.3882 7.0655 12 7 3.2153 0.8701 7.3564 13 14 4.1034 -1.5436 8.3867 14 1 5.4261 -2.0800 7.9771 15 1 4.2447 -0.8028 9.6660 16 1 3.1482 -2.6662 8.5672 17 6 2.0324 -0.7104 -1.2303 18 6 2.2055 -2.0416 -1.3593 19 6 2.6822 -2.2805 -2.6635 20 6 2.7902 -1.0854 -3.2790 21 7 2.3897 -0.1183 -2.4053 22 1 2.3635 0.8338 -2.5892 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 2.2490 -1.6317 1.1528 27 1 2.8272 -1.5945 3.4141 28 1 3.4364 0.9018 4.5868 29 1 1.7648 0.4707 5.0208 30 1 3.3644 1.1983 8.2570 31 1 2.0109 -2.7877 -0.6032 32 1 2.9196 -3.2434 -3.0910 33 1 3.1308 -0.9229 -4.2909 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787370974.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:43:13 Heat of formation + Delta-G solvation = 7.722834 kcal Electronic energy + Delta-G solvation = -16166.041770 eV Core-core repulsion = 13420.352445 eV Total energy + Delta-G solvation = -2745.689325 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.27598 -39.14827 -35.36981 -33.98307 -32.35930 -31.09439 -30.45989 -28.02468 -26.92527 -23.48097 -22.24468 -20.84184 -20.42703 -19.55447 -18.49077 -17.37033 -15.88270 -15.62617 -14.87469 -14.64712 -14.35445 -13.87700 -13.82837 -13.50948 -13.01447 -12.76151 -12.56454 -12.29454 -11.92697 -11.89047 -11.72143 -11.01413 -10.94110 -10.83856 -10.27267 -9.40574 -9.35311 -8.95411 -8.80688 -8.66910 -8.13688 -7.73406 -6.12362 -4.18786 2.13083 2.90758 3.04278 3.28432 3.32939 3.34571 3.62020 3.97466 4.35999 4.67372 5.05391 5.14741 5.23621 5.24633 5.35008 5.43336 5.59364 5.72697 5.95066 6.12626 6.22354 6.30815 6.77923 6.95955 7.04699 7.16556 7.46151 7.54826 7.59124 7.60436 7.94412 8.07968 8.79672 8.97636 9.36116 9.51146 10.97883 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.046011 B = 0.004411 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.407316 B = 6346.904422 C = 6700.870042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.233 3.767 3 H 0.088 0.912 4 N -0.746 5.746 5 C 0.695 3.305 6 O -0.602 6.602 7 N -0.728 5.728 8 C 0.267 3.733 9 C -0.542 4.542 10 H 0.062 0.938 11 C 0.064 3.936 12 N -0.886 5.886 13 Si 0.904 3.096 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.015 3.985 18 C -0.191 4.191 19 C -0.200 4.200 20 C -0.016 4.016 21 N -0.553 5.553 22 H 0.414 0.586 23 H 0.070 0.930 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.394 0.606 27 H 0.387 0.613 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.266 0.734 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 -5.203 -19.058 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.126 3.874 3 H 0.106 0.894 4 N -0.404 5.404 5 C 0.395 3.605 6 O -0.482 6.482 7 N -0.380 5.380 8 C 0.146 3.854 9 C -0.580 4.580 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.524 5.524 13 Si 0.731 3.269 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.098 4.098 18 C -0.216 4.216 19 C -0.225 4.225 20 C -0.147 4.147 21 N -0.148 5.148 22 H 0.250 0.750 23 H 0.089 0.911 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.228 0.772 27 H 0.219 0.781 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.531 -3.790 -18.812 19.356 hybrid contribution 0.617 -1.082 0.543 1.358 sum -1.915 -4.872 -18.269 19.005 Atomic orbital electron populations 1.22177 0.94421 1.02465 1.02373 1.18767 0.93418 0.95611 0.79617 0.89369 1.45124 1.73293 1.13491 1.08480 1.16109 0.78874 0.85214 0.80301 1.90863 1.58017 1.14595 1.84710 1.45708 1.68434 1.13657 1.10196 1.18979 0.97224 0.91983 0.77198 1.21203 1.45796 0.96537 0.94509 0.91967 1.24941 0.95260 0.95312 0.98483 1.69971 1.47396 1.14132 1.20875 0.86471 0.79366 0.80496 0.80536 1.20098 1.21103 1.20079 1.20409 1.07350 0.93305 0.88753 1.20631 1.08801 0.94058 0.98092 1.20892 1.08785 0.97300 0.95487 1.21808 1.08136 0.88242 0.96547 1.41893 1.52237 1.09265 1.11391 0.75005 0.91127 0.92333 0.92150 0.77203 0.78102 0.95766 0.95718 0.92436 0.84795 0.84795 0.81985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.47 37.16 0.35 -1.61 16 2 C 0.23 3.20 3.08 -69.09 -0.21 2.98 16 3 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 4 N -0.75 -11.61 5.06 -59.82 -0.30 -11.92 16 5 C 0.70 14.54 8.53 -86.92 -0.74 13.80 16 6 O -0.60 -15.02 16.01 5.28 0.08 -14.94 16 7 N -0.73 -15.85 5.55 -66.41 -0.37 -16.22 16 8 C 0.27 7.24 5.43 -5.19 -0.03 7.21 16 9 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 10 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 13 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 C 0.02 0.18 6.22 -81.79 -0.51 -0.33 16 18 C -0.19 -2.23 10.00 -39.77 -0.40 -2.63 16 19 C -0.20 -2.10 10.86 -39.78 -0.43 -2.53 16 20 C -0.02 -0.15 11.94 -16.75 -0.20 -0.35 16 21 N -0.55 -5.37 6.07 -9.12 -0.06 -5.43 16 22 H 0.41 2.99 8.96 -40.82 -0.37 2.62 16 23 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.39 5.17 7.35 -40.82 -0.30 4.87 16 27 H 0.39 7.23 8.34 -40.82 -0.34 6.89 16 28 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 31 H 0.13 1.42 7.43 -52.49 -0.39 1.03 16 32 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 289.48 15.07 4.36 4.36 Total: -1.00 -33.56 289.48 -7.43 -40.99 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -4.28 Total: 9.77 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -2.59 Total: 3.01 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 0.01 Total: -59.20 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.08 Total: -14.94 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.56 -7.43 -40.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787370974.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.716 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds