Wall clock time and date at job start Mon Mar 30 2020 17:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47002 * 2 1 4 4 N 1.46494 * 109.47021 * 180.02562 * 3 2 1 5 5 N 1.28444 * 125.19157 * 264.62252 * 4 3 2 6 6 C 1.30866 * 110.92718 * 179.82199 * 5 4 3 7 7 C 1.39681 * 107.85941 * 0.43128 * 6 5 4 8 8 C 1.36603 * 125.18803 * 84.92256 * 4 3 2 9 9 C 1.47155 * 126.88322 * 0.02562 * 8 4 3 10 10 O 1.21628 * 120.00533 * 5.03758 * 9 8 4 11 11 N 1.34780 * 119.99826 * 185.04281 * 9 8 4 12 12 C 1.46507 * 119.99778 * 185.06472 * 11 9 8 13 13 C 1.50700 * 109.46672 * 179.97438 * 12 11 9 14 14 H 1.07994 * 120.00416 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99901 * 179.97438 * 13 12 11 16 16 N 1.31523 * 119.99575 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00168 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47142 * 60.00205 * 17 15 13 19 19 H 1.48505 * 109.47343 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47187 * 299.99939 * 17 15 13 21 21 H 1.09005 * 109.46888 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47129 * 299.99174 * 1 2 3 23 23 H 1.08993 * 109.47485 * 59.99338 * 1 2 3 24 24 H 1.08993 * 109.47485 * 120.00662 * 2 1 3 25 25 H 1.08997 * 109.46675 * 240.00543 * 2 1 3 26 26 H 1.08993 * 109.47541 * 300.00628 * 3 2 1 27 27 H 1.09007 * 109.46592 * 60.00274 * 3 2 1 28 28 H 1.07992 * 126.07325 * 180.18384 * 6 5 4 29 29 H 1.07995 * 127.31702 * 179.70872 * 7 6 5 30 30 H 0.96995 * 120.00439 * 5.06232 * 11 9 8 31 31 H 1.09001 * 109.46911 * 299.99776 * 12 11 9 32 32 H 1.08993 * 109.47242 * 59.99708 * 12 11 9 33 33 H 0.97001 * 119.99147 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.2456 1.5408 1.0441 6 6 5.5138 1.5068 0.7229 7 6 5.6008 1.3836 -0.6657 8 6 4.2917 1.3439 -1.1130 9 6 3.8381 1.2207 -2.5075 10 8 2.6525 1.2907 -2.7699 11 7 4.7365 1.0302 -3.4940 12 6 4.2979 1.0185 -4.8918 13 6 5.4868 0.7897 -5.7892 14 1 6.4706 0.6659 -5.3613 15 6 5.3185 0.7385 -7.1568 16 7 4.1205 0.8898 -7.6780 17 14 6.7921 0.4557 -8.2692 18 1 7.4208 -0.8478 -7.9362 19 1 6.3477 0.4437 -9.6862 20 1 7.7795 1.5468 -8.0699 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8898 24 1 1.8934 -0.5139 0.8898 25 1 1.8933 -0.5137 -0.8900 26 1 1.6766 1.9564 -0.8898 27 1 1.6766 1.9563 0.8901 28 1 6.3454 1.5676 1.4092 29 1 6.4988 1.3312 -1.2633 30 1 5.6733 0.9008 -3.2785 31 1 3.5723 0.2184 -5.0383 32 1 3.8375 1.9757 -5.1362 33 1 4.0022 0.8542 -8.6401 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834652460.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:03 Heat of formation + Delta-G solvation = 24.076481 kcal Electronic energy + Delta-G solvation = -16466.322319 eV Core-core repulsion = 13721.342141 eV Total energy + Delta-G solvation = -2744.980177 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.31848 -38.55524 -35.44962 -34.24496 -32.49199 -31.41070 -30.64265 -27.30000 -26.41620 -23.58621 -22.15562 -21.93950 -20.77687 -19.52555 -17.98746 -16.27322 -15.75922 -15.46314 -15.23974 -15.05171 -14.46249 -14.15852 -13.78764 -13.48267 -13.11175 -12.83663 -12.15081 -12.04065 -11.94555 -11.91267 -11.39824 -11.05322 -10.91362 -10.81031 -10.64156 -10.35835 -9.47776 -9.37170 -9.01596 -8.84953 -8.77789 -7.98435 -6.21084 -4.28364 1.59016 2.60003 2.78751 3.23866 3.28786 3.30135 3.75207 3.94459 4.32662 4.62720 4.83246 5.02121 5.14122 5.15493 5.17847 5.37288 5.42645 5.55707 5.66887 5.80678 5.90737 5.97299 6.10601 6.19247 6.64979 6.91498 7.19751 7.27831 7.42841 7.59013 7.89984 8.21459 8.49437 8.67822 8.92355 9.38009 10.89073 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031792 B = 0.005611 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.506471 B = 4988.979869 C = 5723.193306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.118 3.882 4 N -0.259 5.259 5 N -0.290 5.290 6 C -0.008 4.008 7 C -0.199 4.199 8 C -0.022 4.022 9 C 0.570 3.430 10 O -0.553 6.553 11 N -0.692 5.692 12 C 0.251 3.749 13 C -0.546 4.546 14 H 0.064 0.936 15 C 0.065 3.935 16 N -0.886 5.886 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 H 0.060 0.940 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.183 0.817 29 H 0.160 0.840 30 H 0.395 0.605 31 H 0.031 0.969 32 H 0.030 0.970 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.524 -0.150 14.391 14.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C -0.001 4.001 4 N -0.046 5.046 5 N -0.122 5.122 6 C -0.184 4.184 7 C -0.227 4.227 8 C -0.151 4.151 9 C 0.354 3.646 10 O -0.433 6.433 11 N -0.339 5.339 12 C 0.131 3.869 13 C -0.584 4.584 14 H 0.082 0.918 15 C -0.139 4.139 16 N -0.523 5.523 17 Si 0.732 3.268 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.200 1.200 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.134 0.866 27 H 0.112 0.888 28 H 0.200 0.800 29 H 0.177 0.823 30 H 0.228 0.772 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.363 0.014 14.874 15.060 hybrid contribution 1.861 -0.255 -1.222 2.241 sum -0.502 -0.241 13.652 13.663 Atomic orbital electron populations 1.21647 0.94100 1.02357 1.02238 1.21810 0.97033 0.95258 1.03145 1.22235 0.72706 0.99682 1.05519 1.45766 1.07534 1.49155 1.02166 1.73129 1.04290 1.20561 1.14222 1.23487 0.93418 1.06422 0.95059 1.22267 0.95864 1.09075 0.95536 1.21858 0.91324 1.11367 0.90567 1.17013 0.86340 0.78497 0.82800 1.90736 1.16146 1.52589 1.83864 1.46254 1.10252 1.69201 1.08231 1.19202 0.96226 0.98023 0.73443 1.21164 0.93716 1.52055 0.91445 0.91775 1.24941 0.96336 0.94644 0.97975 1.69965 1.21520 1.48238 1.12553 0.86445 0.82109 0.78896 0.79314 1.20004 1.21050 1.19996 0.92065 0.92627 0.91750 0.91667 0.90634 0.86626 0.88762 0.80033 0.82277 0.77186 0.95078 0.95222 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.13 -1.72 6.26 -26.73 -0.17 -1.89 16 3 C 0.12 1.64 5.70 -4.04 -0.02 1.62 16 4 N -0.26 -4.15 3.35 -57.14 -0.19 -4.34 16 5 N -0.29 -4.45 11.90 30.59 0.36 -4.08 16 6 C -0.01 -0.10 12.03 -17.42 -0.21 -0.31 16 7 C -0.20 -2.87 10.50 -38.98 -0.41 -3.27 16 8 C -0.02 -0.38 6.96 -82.06 -0.57 -0.95 16 9 C 0.57 11.61 7.79 -12.64 -0.10 11.51 16 10 O -0.55 -12.61 14.76 5.25 0.08 -12.54 16 11 N -0.69 -14.49 5.53 -62.65 -0.35 -14.83 16 12 C 0.25 6.48 5.43 -5.19 -0.03 6.46 16 13 C -0.55 -14.47 9.28 -34.44 -0.32 -14.78 16 14 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 15 C 0.07 1.77 5.46 -17.81 -0.10 1.67 16 16 N -0.89 -25.57 13.29 55.43 0.74 -24.84 16 17 Si 0.91 20.48 29.54 -169.99 -5.02 15.46 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 26 H 0.12 1.76 6.50 -51.93 -0.34 1.42 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.18 1.74 8.06 -52.49 -0.42 1.31 16 29 H 0.16 1.90 7.62 -52.49 -0.40 1.50 16 30 H 0.39 7.15 7.40 -40.82 -0.30 6.85 16 31 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 289.60 15.07 4.36 4.36 Total: -1.00 -31.00 289.60 -5.95 -36.95 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -4.38 Total: 4.97 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.56 Total: -1.12 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.56 Total: -48.09 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.08 Total: -12.54 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.00 -5.95 -36.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652460.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.022 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds