Wall clock time and date at job start Mon Mar 30 2020 17:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47002 * 2 1 4 4 N 1.46494 * 109.47021 * 180.02562 * 3 2 1 5 5 N 1.28444 * 125.19157 * 264.62252 * 4 3 2 6 6 C 1.30866 * 110.92718 * 179.82199 * 5 4 3 7 7 C 1.39681 * 107.85941 * 0.43128 * 6 5 4 8 8 C 1.36603 * 125.18803 * 84.92256 * 4 3 2 9 9 C 1.47155 * 126.88322 * 0.02562 * 8 4 3 10 10 O 1.21628 * 120.00533 * 5.03758 * 9 8 4 11 11 N 1.34780 * 119.99826 * 185.04281 * 9 8 4 12 12 C 1.46507 * 119.99778 * 185.06472 * 11 9 8 13 13 C 1.50700 * 109.46672 * 179.97438 * 12 11 9 14 14 H 1.07994 * 120.00416 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99901 * 179.97438 * 13 12 11 16 16 N 1.31523 * 119.99575 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00168 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47142 * 60.00205 * 17 15 13 19 19 H 1.48505 * 109.47343 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47187 * 299.99939 * 17 15 13 21 21 H 1.09005 * 109.46888 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47129 * 299.99174 * 1 2 3 23 23 H 1.08993 * 109.47485 * 59.99338 * 1 2 3 24 24 H 1.08993 * 109.47485 * 120.00662 * 2 1 3 25 25 H 1.08997 * 109.46675 * 240.00543 * 2 1 3 26 26 H 1.08993 * 109.47541 * 300.00628 * 3 2 1 27 27 H 1.09007 * 109.46592 * 60.00274 * 3 2 1 28 28 H 1.07992 * 126.07325 * 180.18384 * 6 5 4 29 29 H 1.07995 * 127.31702 * 179.70872 * 7 6 5 30 30 H 0.96995 * 120.00439 * 5.06232 * 11 9 8 31 31 H 1.09001 * 109.46911 * 299.99776 * 12 11 9 32 32 H 1.08993 * 109.47242 * 59.99708 * 12 11 9 33 33 H 0.97001 * 119.99147 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.2456 1.5408 1.0441 6 6 5.5138 1.5068 0.7229 7 6 5.6008 1.3836 -0.6657 8 6 4.2917 1.3439 -1.1130 9 6 3.8381 1.2207 -2.5075 10 8 2.6525 1.2907 -2.7699 11 7 4.7365 1.0302 -3.4940 12 6 4.2979 1.0185 -4.8918 13 6 5.4868 0.7897 -5.7892 14 1 6.4706 0.6659 -5.3613 15 6 5.3185 0.7385 -7.1568 16 7 4.1205 0.8898 -7.6780 17 14 6.7921 0.4557 -8.2692 18 1 7.4208 -0.8478 -7.9362 19 1 6.3477 0.4437 -9.6862 20 1 7.7795 1.5468 -8.0699 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8898 24 1 1.8934 -0.5139 0.8898 25 1 1.8933 -0.5137 -0.8900 26 1 1.6766 1.9564 -0.8898 27 1 1.6766 1.9563 0.8901 28 1 6.3454 1.5676 1.4092 29 1 6.4988 1.3312 -1.2633 30 1 5.6733 0.9008 -3.2785 31 1 3.5723 0.2184 -5.0383 32 1 3.8375 1.9757 -5.1362 33 1 4.0022 0.8542 -8.6401 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834652460.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:03 Heat of formation + Delta-G solvation = 2.630734 kcal Electronic energy + Delta-G solvation = -16467.252276 eV Core-core repulsion = 13721.342141 eV Total energy + Delta-G solvation = -2745.910135 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.51318 -40.24839 -36.65130 -36.01015 -34.43442 -32.50924 -32.01541 -29.22508 -27.47953 -25.37514 -23.64527 -23.02192 -22.14625 -21.03317 -19.47753 -18.08777 -17.17867 -16.95868 -16.81836 -16.28331 -16.01458 -15.81101 -15.03885 -14.83624 -14.29819 -14.14881 -13.97458 -13.91673 -13.11505 -13.01063 -12.93790 -12.67651 -12.36523 -12.23750 -11.87438 -11.80682 -11.52069 -11.05297 -10.79909 -10.30537 -10.01678 -9.83173 -8.28940 -6.45340 0.24763 1.39862 1.46303 1.49157 1.57385 1.67870 2.21801 2.30793 2.50605 3.06663 3.54599 3.69348 3.80155 4.01026 4.14068 4.23481 4.42896 4.51347 4.66270 4.73214 4.88714 4.99584 5.07857 5.10426 5.21738 5.26219 5.41142 5.54552 5.63371 5.76966 5.82084 6.62147 6.73360 7.08255 7.18621 7.32923 8.82987 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031792 B = 0.005611 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.506471 B = 4988.979869 C = 5723.193306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.115 3.885 4 N -0.266 5.266 5 N -0.296 5.296 6 C 0.000 4.000 7 C -0.181 4.181 8 C -0.057 4.057 9 C 0.571 3.429 10 O -0.586 6.586 11 N -0.688 5.688 12 C 0.269 3.731 13 C -0.558 4.558 14 H 0.085 0.915 15 C 0.007 3.993 16 N -0.930 5.930 17 Si 0.984 3.016 18 H -0.262 1.262 19 H -0.286 1.286 20 H -0.262 1.262 21 H 0.070 0.930 22 H 0.079 0.921 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.040 0.960 26 H 0.094 0.906 27 H 0.121 0.879 28 H 0.225 0.775 29 H 0.186 0.814 30 H 0.410 0.590 31 H -0.006 1.006 32 H -0.006 1.006 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.777 -0.285 15.960 16.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C -0.005 4.005 4 N -0.053 5.053 5 N -0.128 5.128 6 C -0.176 4.176 7 C -0.210 4.210 8 C -0.185 4.185 9 C 0.357 3.643 10 O -0.468 6.468 11 N -0.337 5.337 12 C 0.147 3.853 13 C -0.595 4.595 14 H 0.103 0.897 15 C -0.193 4.193 16 N -0.568 5.568 17 Si 0.807 3.193 18 H -0.187 1.187 19 H -0.212 1.212 20 H -0.186 1.186 21 H 0.089 0.911 22 H 0.098 0.902 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.059 0.941 26 H 0.112 0.888 27 H 0.139 0.861 28 H 0.242 0.758 29 H 0.203 0.797 30 H 0.247 0.753 31 H 0.012 0.988 32 H 0.012 0.988 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.041 -0.122 16.483 16.484 hybrid contribution 1.120 -0.195 -1.601 1.963 sum 1.080 -0.317 14.883 14.925 Atomic orbital electron populations 1.21636 0.92266 1.03178 1.02802 1.21740 0.98587 0.94400 1.01756 1.22334 0.72215 1.00248 1.05695 1.45950 1.08105 1.49393 1.01892 1.73149 1.05274 1.20475 1.13893 1.24205 0.93696 1.04504 0.95162 1.22690 0.95345 1.06516 0.96432 1.21492 0.92957 1.14902 0.89126 1.17432 0.85679 0.77087 0.84142 1.90714 1.17675 1.53693 1.84747 1.45907 1.11232 1.69965 1.06584 1.18645 0.95608 0.94735 0.76294 1.21565 0.94445 1.51649 0.91876 0.89663 1.26025 0.99478 0.93996 0.99813 1.70127 1.24256 1.49439 1.13022 0.85212 0.78033 0.79470 0.76560 1.18704 1.21165 1.18606 0.91138 0.90197 0.93008 0.90772 0.94070 0.88797 0.86113 0.75837 0.79707 0.75325 0.98812 0.98762 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.91 71.98 0.71 -2.17 16 2 C -0.13 -3.27 6.26 30.60 0.19 -3.08 16 3 C 0.11 3.17 5.70 86.38 0.49 3.66 16 4 N -0.27 -8.29 3.35 -334.70 -1.12 -9.41 16 5 N -0.30 -8.34 11.90 -57.14 -0.68 -9.02 16 6 C 0.00 -0.01 12.03 85.19 1.03 1.02 16 7 C -0.18 -4.73 10.50 22.66 0.24 -4.49 16 8 C -0.06 -1.92 6.96 40.78 0.28 -1.64 16 9 C 0.57 23.97 7.79 86.58 0.67 24.65 16 10 O -0.59 -28.35 14.76 -4.12 -0.06 -28.41 16 11 N -0.69 -29.38 5.53 -470.36 -2.60 -31.98 16 12 C 0.27 14.52 5.43 85.63 0.47 14.99 16 13 C -0.56 -29.72 9.28 25.60 0.24 -29.48 16 14 H 0.09 4.08 7.60 -2.91 -0.02 4.06 16 15 C 0.01 0.37 5.46 84.65 0.46 0.83 16 16 N -0.93 -55.15 13.29 21.45 0.28 -54.86 16 17 Si 0.98 41.53 29.54 68.60 2.03 43.55 16 18 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 19 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 21 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 22 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.04 1.33 8.12 -2.39 -0.02 1.31 16 26 H 0.09 3.01 6.50 -2.39 -0.02 2.99 16 27 H 0.12 2.62 8.14 -2.38 -0.02 2.60 16 28 H 0.23 3.09 8.06 -2.91 -0.02 3.07 16 29 H 0.19 3.74 7.62 -2.91 -0.02 3.71 16 30 H 0.41 14.58 7.40 -92.71 -0.69 13.89 16 31 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 32 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 33 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -69.26 289.60 3.06 -66.20 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.43 Total: 19.65 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 4.78 Total: 4.28 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -4.12 Total: -105.27 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.06 Total: -28.41 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Total: -69.26 3.06 -66.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652460.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.830 kcal (2) G-P(sol) polarization free energy of solvation -69.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds