Wall clock time and date at job start Mon Mar 30 2020 17:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47480 * 2 1 4 4 C 1.47202 * 109.47169 * 120.00268 * 2 1 3 5 5 N 2.60804 * 109.47114 * 120.00168 * 2 1 3 6 6 C 1.50703 * 109.47134 * 239.99843 * 2 1 3 7 7 O 1.21279 * 120.00169 * 271.69786 * 6 2 1 8 8 N 1.34774 * 119.99626 * 91.69677 * 6 2 1 9 9 C 1.47027 * 125.64488 * 174.95125 * 8 6 2 10 10 C 1.54325 * 107.27057 * 181.09475 * 9 8 6 11 11 C 1.55156 * 102.94354 * 22.18705 * 10 9 8 12 12 H 1.09003 * 111.03819 * 82.58524 * 11 10 9 13 13 N 1.46493 * 111.00704 * 206.42577 * 11 10 9 14 14 C 1.36939 * 120.00074 * 267.19829 * 13 11 10 15 15 H 1.07999 * 119.99902 * 359.97438 * 14 13 11 16 16 C 1.38815 * 120.00109 * 179.97438 * 14 13 11 17 17 N 1.31611 * 120.00047 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99863 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46790 * 90.00388 * 18 16 14 20 20 H 1.48495 * 109.47086 * 209.99860 * 18 16 14 21 21 H 1.48503 * 109.47430 * 330.00384 * 18 16 14 22 22 C 1.47426 * 125.65337 * 354.98721 * 8 6 2 23 23 H 1.09000 * 109.47461 * 175.63046 * 1 2 3 24 24 H 1.09004 * 109.47137 * 295.63260 * 1 2 3 25 25 H 1.08997 * 109.47192 * 55.63132 * 1 2 3 26 26 H 1.09001 * 109.87791 * 300.50919 * 9 8 6 27 27 H 1.08994 * 109.88562 * 61.51946 * 9 8 6 28 28 H 1.09003 * 110.71657 * 263.82991 * 10 9 8 29 29 H 1.08995 * 110.72037 * 140.55075 * 10 9 8 30 30 H 0.96996 * 120.00076 * 86.92152 * 13 11 10 31 31 H 0.96998 * 120.00390 * 180.02562 * 17 16 14 32 32 H 1.09004 * 110.36287 * 36.99360 * 22 8 6 33 33 H 1.09001 * 110.36406 * 274.67750 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6940 1.2019 5 7 2.3993 -1.2295 2.1294 6 6 2.0323 -0.7105 -1.2305 7 8 2.2051 -1.9107 -1.2096 8 7 2.2895 -0.0120 -2.3540 9 6 2.8791 -0.5570 -3.5857 10 6 3.0109 0.6106 -4.5862 11 6 3.0125 1.8591 -3.6651 12 1 4.0064 2.0432 -3.2572 13 7 2.5137 3.0380 -4.3775 14 6 3.3910 3.8769 -5.0115 15 1 4.4506 3.6696 -4.9859 16 6 2.9183 4.9936 -5.6870 17 7 1.6271 5.2465 -5.7178 18 14 4.1151 6.1383 -6.5512 19 1 4.3126 5.6829 -7.9508 20 1 3.5669 7.5184 -6.5524 21 1 5.4173 6.1236 -5.8375 22 6 2.0270 1.4253 -2.5514 23 1 -0.3634 -1.0247 -0.0783 24 1 -0.3633 0.4446 0.9266 25 1 -0.3633 0.5801 -0.8482 26 1 3.8628 -0.9751 -3.3722 27 1 2.2296 -1.3295 -3.9973 28 1 2.1590 0.6339 -5.2659 29 1 3.9464 0.5394 -5.1409 30 1 1.5617 3.2221 -4.4036 31 1 1.2968 6.0267 -6.1901 32 1 2.2260 1.9769 -1.6325 33 1 0.9976 1.5821 -2.8735 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967941993.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:34 Heat of formation + Delta-G solvation = 5.311331 kcal Electronic energy + Delta-G solvation = -16438.001056 eV Core-core repulsion = 13692.207160 eV Total energy + Delta-G solvation = -2745.793895 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.26199 -37.74385 -36.53978 -34.23170 -33.47084 -31.47961 -29.74554 -27.77733 -25.57590 -23.86194 -22.87535 -20.43010 -19.77402 -17.80411 -17.47827 -17.17176 -16.04667 -15.39418 -14.84834 -14.34583 -13.97457 -13.64398 -13.39342 -13.16579 -13.11620 -12.84646 -12.75774 -12.27676 -12.16576 -11.87751 -11.74831 -11.64314 -11.20675 -10.92149 -10.80767 -10.38162 -10.18841 -9.94590 -9.79613 -9.06056 -8.60447 -7.16171 -5.92321 -3.23268 2.27458 2.47043 2.66587 3.10788 3.35410 3.41647 3.42660 3.71367 4.29434 4.49809 4.68013 4.72465 4.99916 5.10510 5.31731 5.34568 5.43420 5.48513 5.52000 5.63757 5.75771 5.83621 6.02299 6.08277 6.24655 6.37086 6.52355 6.77879 7.34176 7.50104 7.57398 8.01306 8.25022 9.37334 9.89191 10.23901 11.29656 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.040461 B = 0.005026 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.861865 B = 5570.047576 C = 5809.817874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.012 4.012 3 H 0.137 0.863 4 C 0.225 3.775 5 N -0.419 5.419 6 C 0.537 3.463 7 O -0.538 6.538 8 N -0.606 5.606 9 C 0.110 3.890 10 C -0.156 4.156 11 C 0.172 3.828 12 H 0.069 0.931 13 N -0.713 5.713 14 C -0.248 4.248 15 H 0.073 0.927 16 C -0.007 4.007 17 N -0.930 5.930 18 Si 0.908 3.092 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.082 3.918 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.387 0.613 31 H 0.257 0.743 32 H 0.079 0.921 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.162 -6.833 6.662 9.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.036 4.036 3 H 0.154 0.846 4 C -0.094 4.094 5 N -0.095 5.095 6 C 0.323 3.677 7 O -0.415 6.415 8 N -0.339 5.339 9 C -0.013 4.013 10 C -0.198 4.198 11 C 0.059 3.941 12 H 0.087 0.913 13 N -0.354 5.354 14 C -0.379 4.379 15 H 0.091 0.909 16 C -0.204 4.204 17 N -0.577 5.577 18 Si 0.739 3.261 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.206 1.206 22 C -0.041 4.041 23 H 0.090 0.910 24 H 0.097 0.903 25 H 0.104 0.896 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.221 0.779 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.368 -8.184 8.064 11.570 hybrid contribution 0.168 0.972 -1.016 1.416 sum -1.201 -7.212 7.048 10.155 Atomic orbital electron populations 1.21734 0.89161 1.04348 1.04520 1.18856 0.99240 1.00046 0.85476 0.84592 1.28191 0.93651 0.93575 0.93956 1.81176 1.08102 1.08214 1.11971 1.19527 0.78299 0.86860 0.83050 1.90750 1.53001 1.14101 1.83676 1.48400 1.61146 1.11211 1.13139 1.22025 0.97888 0.97330 0.84030 1.23466 1.03070 0.95249 0.97985 1.21293 0.95655 0.87273 0.89830 0.91254 1.42252 1.07228 1.24622 1.61248 1.19218 0.89940 1.02820 1.25918 0.90920 1.24752 0.95967 0.98699 1.00942 1.69643 1.11556 1.29407 1.47090 0.86185 0.80033 0.80275 0.79629 1.21584 1.21686 1.20635 1.22884 1.01250 0.79089 1.00909 0.90963 0.90286 0.89564 0.91754 0.91766 0.90495 0.90552 0.77906 0.93279 0.90312 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.13 37.16 0.34 -0.73 16 2 C -0.01 -0.12 2.68 -94.56 -0.25 -0.37 16 3 H 0.14 1.01 6.50 -51.93 -0.34 0.67 16 4 C 0.23 2.89 14.10 -20.76 -0.29 2.60 16 5 N -0.42 -6.41 18.54 42.15 0.78 -5.62 16 6 C 0.54 7.21 6.86 -10.99 -0.08 7.13 16 7 O -0.54 -9.27 16.71 5.56 0.09 -9.18 16 8 N -0.61 -7.90 3.33 -170.51 -0.57 -8.47 16 9 C 0.11 1.48 6.87 -3.06 -0.02 1.46 16 10 C -0.16 -2.33 6.65 -24.90 -0.17 -2.49 16 11 C 0.17 2.83 3.71 -65.79 -0.24 2.59 16 12 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 13 N -0.71 -15.46 5.24 -51.35 -0.27 -15.73 16 14 C -0.25 -6.21 9.96 -15.06 -0.15 -6.36 16 15 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 16 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 17 N -0.93 -25.90 13.06 55.49 0.72 -25.17 16 18 Si 0.91 20.88 29.55 -169.99 -5.02 15.86 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.08 1.05 6.38 -2.53 -0.02 1.04 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.39 8.86 7.76 -40.82 -0.32 8.54 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.08 0.85 6.66 -51.93 -0.35 0.51 16 33 H 0.08 0.97 8.00 -51.93 -0.42 0.55 16 LS Contribution 289.74 15.07 4.37 4.37 Total: -1.00 -30.89 289.74 -5.21 -36.11 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -4.34 Total: 3.26 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -0.98 Total: 4.59 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.67 Total: -54.99 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.89 -5.21 -36.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967941993.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.417 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds