Wall clock time and date at job start Mon Mar 30 2020 17:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47480 * 2 1 4 4 C 1.47202 * 109.47169 * 120.00268 * 2 1 3 5 5 N 2.60804 * 109.47114 * 120.00168 * 2 1 3 6 6 C 1.50703 * 109.47134 * 239.99843 * 2 1 3 7 7 O 1.21279 * 120.00169 * 271.69786 * 6 2 1 8 8 N 1.34774 * 119.99626 * 91.69677 * 6 2 1 9 9 C 1.47027 * 125.64488 * 174.95125 * 8 6 2 10 10 C 1.54325 * 107.27057 * 181.09475 * 9 8 6 11 11 C 1.55156 * 102.94354 * 22.18705 * 10 9 8 12 12 H 1.09003 * 111.03819 * 82.58524 * 11 10 9 13 13 N 1.46493 * 111.00704 * 206.42577 * 11 10 9 14 14 C 1.36939 * 120.00074 * 267.19829 * 13 11 10 15 15 H 1.07999 * 119.99902 * 359.97438 * 14 13 11 16 16 C 1.38815 * 120.00109 * 179.97438 * 14 13 11 17 17 N 1.31611 * 120.00047 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99863 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46790 * 90.00388 * 18 16 14 20 20 H 1.48495 * 109.47086 * 209.99860 * 18 16 14 21 21 H 1.48503 * 109.47430 * 330.00384 * 18 16 14 22 22 C 1.47426 * 125.65337 * 354.98721 * 8 6 2 23 23 H 1.09000 * 109.47461 * 175.63046 * 1 2 3 24 24 H 1.09004 * 109.47137 * 295.63260 * 1 2 3 25 25 H 1.08997 * 109.47192 * 55.63132 * 1 2 3 26 26 H 1.09001 * 109.87791 * 300.50919 * 9 8 6 27 27 H 1.08994 * 109.88562 * 61.51946 * 9 8 6 28 28 H 1.09003 * 110.71657 * 263.82991 * 10 9 8 29 29 H 1.08995 * 110.72037 * 140.55075 * 10 9 8 30 30 H 0.96996 * 120.00076 * 86.92152 * 13 11 10 31 31 H 0.96998 * 120.00390 * 180.02562 * 17 16 14 32 32 H 1.09004 * 110.36287 * 36.99360 * 22 8 6 33 33 H 1.09001 * 110.36406 * 274.67750 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6940 1.2019 5 7 2.3993 -1.2295 2.1294 6 6 2.0323 -0.7105 -1.2305 7 8 2.2051 -1.9107 -1.2096 8 7 2.2895 -0.0120 -2.3540 9 6 2.8791 -0.5570 -3.5857 10 6 3.0109 0.6106 -4.5862 11 6 3.0125 1.8591 -3.6651 12 1 4.0064 2.0432 -3.2572 13 7 2.5137 3.0380 -4.3775 14 6 3.3910 3.8769 -5.0115 15 1 4.4506 3.6696 -4.9859 16 6 2.9183 4.9936 -5.6870 17 7 1.6271 5.2465 -5.7178 18 14 4.1151 6.1383 -6.5512 19 1 4.3126 5.6829 -7.9508 20 1 3.5669 7.5184 -6.5524 21 1 5.4173 6.1236 -5.8375 22 6 2.0270 1.4253 -2.5514 23 1 -0.3634 -1.0247 -0.0783 24 1 -0.3633 0.4446 0.9266 25 1 -0.3633 0.5801 -0.8482 26 1 3.8628 -0.9751 -3.3722 27 1 2.2296 -1.3295 -3.9973 28 1 2.1590 0.6339 -5.2659 29 1 3.9464 0.5394 -5.1409 30 1 1.5617 3.2221 -4.4036 31 1 1.2968 6.0267 -6.1901 32 1 2.2260 1.9769 -1.6325 33 1 0.9976 1.5821 -2.8735 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967941993.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:33 Heat of formation + Delta-G solvation = -15.449031 kcal Electronic energy + Delta-G solvation = -16438.901293 eV Core-core repulsion = 13692.207160 eV Total energy + Delta-G solvation = -2746.694132 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.35586 -38.94107 -37.63972 -35.84772 -34.42690 -33.08100 -31.04197 -29.14404 -26.38966 -25.54801 -24.08419 -21.71718 -20.89164 -19.35933 -18.54529 -18.35932 -17.28270 -16.57334 -16.27399 -15.64367 -15.33906 -15.00318 -14.56731 -14.40143 -14.16726 -14.10483 -13.73258 -13.38732 -13.17989 -13.04249 -12.95577 -12.75984 -12.63270 -12.52966 -12.16136 -12.05294 -11.71016 -11.55673 -10.98360 -10.87803 -9.71276 -8.96732 -7.89721 -5.17559 1.24194 1.46498 1.54264 1.55798 1.62707 1.65901 2.07449 2.61515 2.80016 3.32260 3.43386 3.86928 3.90752 3.96274 3.99364 4.17523 4.33570 4.43829 4.61624 4.77819 4.81359 4.82760 4.90105 5.07390 5.19707 5.25536 5.30504 5.47105 5.61443 6.31465 6.34080 6.46861 6.94892 7.41123 8.13333 8.36685 9.32996 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.040461 B = 0.005026 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.861865 B = 5570.047576 C = 5809.817874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.004 4.004 3 H 0.172 0.828 4 C 0.243 3.757 5 N -0.468 5.468 6 C 0.538 3.462 7 O -0.580 6.580 8 N -0.602 5.602 9 C 0.114 3.886 10 C -0.146 4.146 11 C 0.161 3.839 12 H 0.068 0.932 13 N -0.723 5.723 14 C -0.238 4.238 15 H 0.077 0.923 16 C -0.066 4.066 17 N -0.964 5.964 18 Si 0.963 3.037 19 H -0.292 1.292 20 H -0.299 1.299 21 H -0.270 1.270 22 C 0.093 3.907 23 H 0.060 0.940 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.379 0.621 31 H 0.250 0.750 32 H 0.108 0.892 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.083 -6.607 7.280 10.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.028 4.028 3 H 0.189 0.811 4 C -0.075 4.075 5 N -0.144 5.144 6 C 0.325 3.675 7 O -0.460 6.460 8 N -0.334 5.334 9 C -0.009 4.009 10 C -0.187 4.187 11 C 0.051 3.949 12 H 0.086 0.914 13 N -0.363 5.363 14 C -0.370 4.370 15 H 0.095 0.905 16 C -0.259 4.259 17 N -0.615 5.615 18 Si 0.793 3.207 19 H -0.219 1.219 20 H -0.226 1.226 21 H -0.195 1.195 22 C -0.030 4.030 23 H 0.079 0.921 24 H 0.119 0.881 25 H 0.121 0.879 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.212 0.788 31 H 0.059 0.941 32 H 0.126 0.874 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.259 -7.986 8.702 11.878 hybrid contribution 0.176 0.812 -1.215 1.472 sum -1.083 -7.174 7.486 10.425 Atomic orbital electron populations 1.21813 0.87040 1.04253 1.06444 1.19089 1.00706 1.00658 0.82323 0.81118 1.28703 0.92365 0.92535 0.93873 1.81193 1.09768 1.09694 1.13739 1.20038 0.77361 0.86398 0.83677 1.90743 1.54831 1.16071 1.84354 1.48384 1.60796 1.11233 1.12988 1.21936 0.98294 0.96699 0.83950 1.23266 1.02596 0.94997 0.97835 1.21491 0.96519 0.86005 0.90898 0.91379 1.42342 1.06493 1.25755 1.61677 1.19566 0.90613 1.02497 1.24339 0.90498 1.25394 0.97161 1.00605 1.02749 1.69766 1.12991 1.29899 1.48797 0.85300 0.78740 0.78151 0.78501 1.21933 1.22591 1.19535 1.22782 1.00537 0.78850 1.00800 0.92108 0.88109 0.87938 0.91444 0.91456 0.91557 0.90659 0.78800 0.94062 0.87415 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.13 71.98 0.66 -0.97 16 2 C 0.00 -0.06 2.68 -13.34 -0.04 -0.10 16 3 H 0.17 1.70 6.50 -2.39 -0.02 1.68 16 4 C 0.24 5.79 14.10 89.44 1.26 7.05 16 5 N -0.47 -13.87 18.54 20.01 0.37 -13.50 16 6 C 0.54 13.13 6.86 87.66 0.60 13.73 16 7 O -0.58 -19.25 16.71 -3.03 -0.05 -19.30 16 8 N -0.60 -14.06 3.33 -811.78 -2.70 -16.76 16 9 C 0.11 2.85 6.87 86.73 0.60 3.45 16 10 C -0.15 -4.12 6.65 31.78 0.21 -3.91 16 11 C 0.16 4.97 3.71 46.38 0.17 5.14 16 12 H 0.07 2.14 8.09 -2.39 -0.02 2.12 16 13 N -0.72 -30.37 5.24 -316.39 -1.66 -32.02 16 14 C -0.24 -11.66 9.96 84.03 0.84 -10.82 16 15 H 0.08 3.63 7.83 -2.91 -0.02 3.61 16 16 C -0.07 -3.45 5.50 84.86 0.47 -2.98 16 17 N -0.96 -53.86 13.06 21.65 0.28 -53.57 16 18 Si 0.96 42.68 29.55 68.60 2.03 44.71 16 19 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 C 0.09 2.08 6.38 86.85 0.55 2.64 16 23 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.38 17.01 7.76 -92.71 -0.72 16.29 16 31 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 32 H 0.11 1.83 6.66 -2.38 -0.02 1.81 16 33 H 0.09 1.86 8.00 -2.39 -0.02 1.84 16 Total: -1.00 -66.58 289.74 3.99 -62.58 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.40 Total: 14.66 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 5.32 Total: 13.22 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -3.71 Total: -115.86 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.05 Total: -19.30 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -66.58 3.99 -62.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967941993.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.133 kcal (2) G-P(sol) polarization free energy of solvation -66.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds