Wall clock time and date at job start Mon Mar 30 2020 17:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47256 * 2 1 4 4 C 1.47200 * 109.46814 * 240.00344 * 2 1 3 5 5 N 2.60802 * 109.46971 * 240.00218 * 2 1 3 6 6 C 1.50697 * 109.46876 * 120.00434 * 2 1 3 7 7 O 1.21276 * 120.00265 * 120.00548 * 6 2 1 8 8 N 1.34777 * 119.99959 * 299.99307 * 6 2 1 9 9 C 1.47429 * 125.64754 * 0.05126 * 8 6 2 10 10 C 1.54910 * 104.83088 * 204.09112 * 9 8 6 11 11 C 1.55161 * 101.58284 * 322.98842 * 10 9 8 12 12 H 1.09008 * 110.87257 * 277.07320 * 11 10 9 13 13 N 1.46499 * 110.72256 * 153.86606 * 11 10 9 14 14 C 1.36939 * 119.99933 * 91.75438 * 13 11 10 15 15 H 1.08001 * 119.99700 * 359.72658 * 14 13 11 16 16 C 1.38810 * 120.00095 * 179.71972 * 14 13 11 17 17 N 1.31612 * 120.00054 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99751 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47517 * 89.99708 * 18 16 14 20 20 H 1.48502 * 109.46736 * 209.99481 * 18 16 14 21 21 H 1.48496 * 109.47375 * 329.99177 * 18 16 14 22 22 C 1.47018 * 125.64894 * 180.02562 * 8 6 2 23 23 H 1.08997 * 109.47256 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46873 * 299.99991 * 1 2 3 25 25 H 1.09000 * 109.47298 * 59.99801 * 1 2 3 26 26 H 1.08998 * 110.36380 * 322.92563 * 9 8 6 27 27 H 1.08997 * 110.37099 * 85.25249 * 9 8 6 28 28 H 1.08994 * 111.00573 * 204.91801 * 10 9 8 29 29 H 1.09004 * 111.00601 * 81.06057 * 10 9 8 30 30 H 0.97001 * 119.99790 * 271.47411 * 13 11 10 31 31 H 0.96998 * 120.00381 * 180.02562 * 17 16 14 32 32 H 1.09002 * 109.88522 * 59.56274 * 22 8 6 33 33 H 1.09007 * 110.01054 * 298.46964 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6938 -1.2019 5 7 2.3993 -1.2294 -2.1295 6 6 2.0323 -0.7105 1.2304 7 8 2.7296 -1.6965 1.1191 8 7 1.7068 -0.2500 2.4545 9 6 0.8703 0.9314 2.7337 10 6 1.2941 1.3915 4.1508 11 6 1.5390 0.0329 4.8592 12 1 0.6029 -0.3878 5.2267 13 7 2.5016 0.1847 5.9530 14 6 2.0601 0.4511 7.2216 15 1 1.0025 0.5536 7.4149 16 6 2.9718 0.5892 8.2592 17 7 2.5475 0.8457 9.4783 18 14 4.8011 0.4123 7.9247 19 1 5.3716 1.7388 7.5780 20 1 5.4771 -0.1156 9.1370 21 1 5.0090 -0.5269 6.7935 22 6 2.1267 -0.8430 3.7326 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.0684 1.7172 2.0047 27 1 -0.1853 0.6600 2.7228 28 1 0.4924 1.9468 4.6374 29 1 2.2092 1.9826 4.1124 30 1 3.4515 0.0925 5.7794 31 1 3.1846 0.9426 10.2033 32 1 3.2147 -0.8507 3.7981 33 1 1.7433 -1.8601 3.8158 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018630975.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:39 Heat of formation + Delta-G solvation = 13.005185 kcal Electronic energy + Delta-G solvation = -16508.841645 eV Core-core repulsion = 13763.381380 eV Total energy + Delta-G solvation = -2745.460265 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.39160 -37.83634 -36.59244 -34.57356 -33.46362 -31.55863 -29.95368 -28.14849 -25.76454 -23.69643 -22.71075 -20.56920 -19.99357 -17.95598 -17.65779 -17.23789 -16.10669 -15.72057 -14.81645 -14.42753 -14.10852 -13.82150 -13.54604 -13.21274 -13.06617 -12.90168 -12.59170 -12.49872 -12.22811 -12.13516 -11.76781 -11.71531 -11.53150 -10.94668 -10.79875 -10.60705 -10.16775 -9.95819 -9.70031 -9.06605 -8.68072 -7.42822 -5.88257 -3.26378 2.28261 2.35577 2.61743 3.04392 3.31715 3.35166 3.40669 3.57352 4.23637 4.49740 4.51599 4.64716 4.77983 5.00380 5.06199 5.17308 5.27482 5.36767 5.41836 5.54940 5.65646 5.72904 5.80481 6.01751 6.13950 6.28722 6.42762 6.67547 7.28108 7.43810 7.84828 7.96203 8.29993 9.06386 9.78939 9.96281 11.29296 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.046189 B = 0.005302 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.059380 B = 5279.764572 C = 5662.865561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.008 4.008 3 H 0.139 0.861 4 C 0.225 3.775 5 N -0.417 5.417 6 C 0.534 3.466 7 O -0.534 6.534 8 N -0.606 5.606 9 C 0.092 3.908 10 C -0.156 4.156 11 C 0.177 3.823 12 H 0.077 0.923 13 N -0.739 5.739 14 C -0.252 4.252 15 H 0.093 0.907 16 C 0.011 3.989 17 N -0.929 5.929 18 Si 0.882 3.118 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.276 1.276 22 C 0.097 3.903 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.364 0.636 31 H 0.261 0.739 32 H 0.069 0.931 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.117 2.890 -15.925 17.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.033 4.033 3 H 0.157 0.843 4 C -0.094 4.094 5 N -0.092 5.092 6 C 0.319 3.681 7 O -0.411 6.411 8 N -0.340 5.340 9 C -0.031 4.031 10 C -0.197 4.197 11 C 0.065 3.935 12 H 0.095 0.905 13 N -0.381 5.381 14 C -0.382 4.382 15 H 0.111 0.889 16 C -0.186 4.186 17 N -0.576 5.576 18 Si 0.712 3.288 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.027 4.027 23 H 0.090 0.910 24 H 0.109 0.891 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.197 0.803 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.272 1.551 -17.201 18.058 hybrid contribution 1.266 0.197 0.320 1.321 sum -4.006 1.749 -16.881 17.438 Atomic orbital electron populations 1.21955 0.89607 1.04492 1.04819 1.18786 0.98916 1.00098 0.85485 0.84316 1.28109 0.93630 0.93795 0.93883 1.81175 1.07824 1.07900 1.12287 1.19572 0.80835 0.84640 0.83008 1.90785 1.38039 1.26292 1.85951 1.48345 1.50780 1.29782 1.05072 1.22634 0.94738 0.86877 0.98871 1.23564 1.02564 1.00711 0.92830 1.21172 0.93929 0.91767 0.86589 0.90466 1.42726 1.03665 1.86306 1.05384 1.19036 0.94734 1.41601 0.82824 0.88911 1.24663 0.97485 1.01236 0.95198 1.69687 1.33596 1.54693 0.99592 0.86593 0.86892 0.78002 0.77283 1.20941 1.21580 1.20222 1.22426 1.00531 0.97801 0.81892 0.91049 0.89118 0.90349 0.90649 0.90639 0.89798 0.90590 0.80288 0.92855 0.91248 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.96 37.16 0.33 -0.51 16 2 C -0.01 -0.07 2.45 -94.56 -0.23 -0.30 16 3 H 0.14 0.71 7.85 -51.93 -0.41 0.30 16 4 C 0.23 2.69 13.88 -20.76 -0.29 2.40 16 5 N -0.42 -6.12 18.54 42.15 0.78 -5.34 16 6 C 0.53 6.79 7.20 -10.99 -0.08 6.71 16 7 O -0.53 -9.37 16.36 5.56 0.09 -9.28 16 8 N -0.61 -7.30 3.32 -170.52 -0.57 -7.87 16 9 C 0.09 0.82 5.13 -2.53 -0.01 0.81 16 10 C -0.16 -2.00 6.77 -24.58 -0.17 -2.17 16 11 C 0.18 2.88 3.62 -66.09 -0.24 2.64 16 12 H 0.08 1.27 8.09 -51.92 -0.42 0.85 16 13 N -0.74 -15.85 5.03 -51.64 -0.26 -16.11 16 14 C -0.25 -6.58 10.44 -15.06 -0.16 -6.74 16 15 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 16 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 17 N -0.93 -27.89 13.97 55.49 0.78 -27.12 16 18 Si 0.88 21.18 27.74 -169.99 -4.71 16.47 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 22 C 0.10 1.44 6.62 -3.06 -0.02 1.42 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.09 0.38 4.99 -51.93 -0.26 0.12 16 25 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.08 0.46 7.36 -51.93 -0.38 0.07 16 27 H 0.08 0.53 7.07 -51.93 -0.37 0.16 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.36 7.85 5.42 -40.82 -0.22 7.63 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.07 1.15 7.72 -51.93 -0.40 0.75 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 281.82 15.07 4.25 4.25 Total: -1.00 -33.70 281.82 -4.77 -38.47 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.16 Total: 2.06 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -0.96 Total: 4.47 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.73 Total: -56.44 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.71 Total: 16.47 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.70 -4.77 -38.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018630975.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.475 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds