Wall clock time and date at job start Mon Mar 30 2020 17:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36444 * 124.85346 * 2 1 4 4 C 1.34483 * 108.85967 * 179.97438 * 3 2 1 5 5 C 1.46683 * 106.33071 * 0.02562 * 4 3 2 6 6 C 1.47269 * 126.94164 * 179.97438 * 5 4 3 7 7 O 1.21633 * 120.00004 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00021 * 0.02910 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27620 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 N 1.46502 * 109.47591 * 179.97438 * 10 9 8 12 12 C 1.36936 * 120.00505 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99628 * 359.97438 * 12 11 10 14 14 C 1.38811 * 119.99842 * 179.97438 * 12 11 10 15 15 N 1.31614 * 120.00469 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99700 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46896 * 89.99850 * 16 14 12 18 18 H 1.48494 * 109.47103 * 209.99655 * 16 14 12 19 19 H 1.48501 * 109.47275 * 329.99811 * 16 14 12 20 20 C 1.34659 * 124.85049 * 180.26581 * 2 1 3 21 21 H 1.08998 * 109.47145 * 90.02272 * 1 2 3 22 22 H 1.08997 * 109.47047 * 210.02388 * 1 2 3 23 23 H 1.09007 * 109.46958 * 330.02235 * 1 2 3 24 24 H 1.08001 * 125.56929 * 359.96310 * 3 2 1 25 25 H 1.08000 * 126.83712 * 180.02562 * 4 3 2 26 26 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 27 27 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 28 28 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 29 29 H 1.09004 * 109.47066 * 299.99732 * 10 9 8 30 30 H 1.09000 * 109.47665 * 59.99541 * 10 9 8 31 31 H 0.97000 * 119.99258 * 359.97438 * 11 10 9 32 32 H 0.96995 * 120.00148 * 179.97438 * 15 14 12 33 33 H 1.08004 * 125.80516 * 0.06066 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5375 0.7491 0.0006 5 6 3.5462 -0.7177 0.0003 6 6 4.7284 -1.5958 0.0002 7 8 4.5885 -2.8041 -0.0005 8 7 5.9653 -1.0607 0.0010 9 6 7.1414 -1.9342 -0.0053 10 6 8.4109 -1.0804 -0.0099 11 7 9.5870 -1.9539 -0.0155 12 6 10.8438 -1.4102 -0.0199 13 1 10.9680 -0.3373 -0.0196 14 6 11.9581 -2.2379 -0.0246 15 7 11.8067 -3.5453 -0.0245 16 14 13.6725 -1.4962 -0.0313 17 1 14.1323 -1.3001 1.3671 18 1 14.6054 -2.4122 -0.7353 19 1 13.6426 -0.1866 -0.7308 20 6 2.2345 -1.1051 -0.0051 21 1 -0.3633 -0.0004 -1.0276 22 1 -0.3633 -0.8897 0.5142 23 1 -0.3633 0.8903 0.5135 24 1 1.8829 2.1373 -0.0006 25 1 4.3981 1.4016 0.0011 26 1 6.0769 -0.0971 0.0012 27 1 7.1306 -2.5644 0.8841 28 1 7.1227 -2.5624 -0.8958 29 1 8.4217 -0.4503 -0.8993 30 1 8.4296 -0.4522 0.8806 31 1 9.4754 -2.9174 -0.0154 32 1 12.5854 -4.1237 -0.0282 33 1 1.8767 -2.1241 -0.0108 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001125659166.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:05 Heat of formation + Delta-G solvation = 24.575797 kcal Electronic energy + Delta-G solvation = -15659.778641 eV Core-core repulsion = 12914.820116 eV Total energy + Delta-G solvation = -2744.958526 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.33512 -38.86231 -35.50940 -33.71750 -32.96022 -31.09323 -29.34194 -28.00143 -26.49950 -23.75202 -22.24935 -21.34880 -20.26632 -19.48033 -18.00466 -17.12807 -15.74789 -15.67971 -15.30345 -14.98860 -14.49544 -14.27295 -13.55717 -13.41076 -13.27276 -13.10762 -12.81080 -12.70316 -12.52687 -12.14044 -11.30914 -11.02633 -10.76739 -10.72574 -10.07175 -9.79683 -9.59770 -8.91174 -8.83107 -8.65706 -8.40538 -6.92949 -5.74109 -3.04363 1.76861 2.28978 2.59817 3.46204 3.49887 3.52805 3.65041 3.75780 4.38871 4.63444 4.70894 4.73432 4.82539 4.98736 5.21337 5.33870 5.56655 5.66744 5.75516 5.90178 5.94985 6.07757 6.27471 6.59104 6.65326 6.81525 6.82491 6.94170 7.02359 7.71184 7.90224 8.43657 8.61183 9.54863 10.10748 10.45731 11.48670 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.073307 B = 0.003554 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.861375 B = 7876.263191 C = 8232.361175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.450 5.450 3 C -0.021 4.021 4 C -0.168 4.168 5 C -0.228 4.228 6 C 0.587 3.413 7 O -0.557 6.557 8 N -0.719 5.719 9 C 0.112 3.888 10 C 0.145 3.855 11 N -0.730 5.730 12 C -0.242 4.242 13 H 0.072 0.928 14 C -0.013 4.013 15 N -0.932 5.932 16 Si 0.910 3.090 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.282 1.282 20 C 0.070 3.930 21 H 0.074 0.926 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.166 0.834 25 H 0.147 0.853 26 H 0.399 0.601 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.386 0.614 32 H 0.256 0.744 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.807 10.359 0.076 25.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.126 5.126 3 C -0.147 4.147 4 C -0.192 4.192 5 C -0.238 4.238 6 C 0.375 3.625 7 O -0.437 6.437 8 N -0.369 5.369 9 C -0.011 4.011 10 C 0.016 3.984 11 N -0.375 5.375 12 C -0.373 4.373 13 H 0.090 0.910 14 C -0.210 4.210 15 N -0.580 5.580 16 Si 0.741 3.259 17 H -0.217 1.217 18 H -0.217 1.217 19 H -0.207 1.207 20 C -0.065 4.065 21 H 0.093 0.907 22 H 0.104 0.896 23 H 0.103 0.897 24 H 0.183 0.817 25 H 0.164 0.836 26 H 0.233 0.767 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.220 0.780 32 H 0.066 0.934 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -24.102 9.635 0.071 25.956 hybrid contribution 0.974 0.582 -0.005 1.135 sum -23.128 10.217 0.066 25.284 Atomic orbital electron populations 1.22102 0.77010 1.04601 1.03487 1.43609 1.06702 1.05969 1.56355 1.21725 0.90600 0.91221 1.11156 1.22092 0.96249 0.93315 1.07570 1.20432 0.92664 0.93369 1.17372 1.17360 0.82376 0.87001 0.75786 1.90769 1.86656 1.14757 1.51471 1.45697 1.05509 1.10486 1.75205 1.21538 0.83777 0.93351 1.02461 1.20760 0.85952 0.93278 0.98368 1.42203 1.00321 1.05324 1.89655 1.19206 0.83110 0.91835 1.43146 0.91037 1.24776 0.97981 0.95366 1.02831 1.69668 1.29112 1.01807 1.57388 0.86148 0.84379 0.77879 0.77511 1.21669 1.21729 1.20721 1.21787 0.89856 0.91714 1.03105 0.90714 0.89620 0.89658 0.81690 0.83552 0.76733 0.91378 0.91385 0.95796 0.95800 0.78003 0.93403 0.80846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.28 11.03 59.85 0.66 0.94 16 2 N -0.45 -3.81 3.09 -124.53 -0.38 -4.20 16 3 C -0.02 -0.18 11.34 -16.83 -0.19 -0.37 16 4 C -0.17 -1.78 10.56 -37.50 -0.40 -2.18 16 5 C -0.23 -3.07 6.29 -103.35 -0.65 -3.72 16 6 C 0.59 9.86 7.81 -12.59 -0.10 9.77 16 7 O -0.56 -11.38 16.91 5.25 0.09 -11.29 16 8 N -0.72 -11.33 5.55 -61.43 -0.34 -11.67 16 9 C 0.11 2.11 5.79 -4.04 -0.02 2.08 16 10 C 0.14 2.99 6.37 -4.04 -0.03 2.96 16 11 N -0.73 -19.21 5.60 -59.91 -0.34 -19.55 16 12 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 13 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 14 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 15 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16 16 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.07 0.79 11.12 -16.84 -0.19 0.60 16 21 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 22 H 0.09 0.26 8.13 -51.93 -0.42 -0.16 16 23 H 0.08 0.20 8.13 -51.92 -0.42 -0.22 16 24 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 25 H 0.15 1.28 7.70 -52.49 -0.40 0.88 16 26 H 0.40 5.17 7.60 -40.82 -0.31 4.86 16 27 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 28 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.39 10.73 7.67 -40.82 -0.31 10.42 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.17 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 293.07 15.07 4.42 4.42 Total: -1.00 -35.69 293.07 -6.39 -42.08 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -4.38 Total: 8.14 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -1.16 Total: 2.53 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -0.34 Total: -63.55 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -35.69 -6.39 -42.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125659166.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.659 kcal (2) G-P(sol) polarization free energy of solvation -35.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds