Wall clock time and date at job start Mon Mar 30 2020 17:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36444 * 124.85346 * 2 1 4 4 C 1.34483 * 108.85967 * 179.97438 * 3 2 1 5 5 C 1.46683 * 106.33071 * 0.02562 * 4 3 2 6 6 C 1.47269 * 126.94164 * 179.97438 * 5 4 3 7 7 O 1.21633 * 120.00004 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00021 * 0.02910 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27620 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 N 1.46502 * 109.47591 * 179.97438 * 10 9 8 12 12 C 1.36936 * 120.00505 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99628 * 359.97438 * 12 11 10 14 14 C 1.38811 * 119.99842 * 179.97438 * 12 11 10 15 15 N 1.31614 * 120.00469 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99700 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46896 * 89.99850 * 16 14 12 18 18 H 1.48494 * 109.47103 * 209.99655 * 16 14 12 19 19 H 1.48501 * 109.47275 * 329.99811 * 16 14 12 20 20 C 1.34659 * 124.85049 * 180.26581 * 2 1 3 21 21 H 1.08998 * 109.47145 * 90.02272 * 1 2 3 22 22 H 1.08997 * 109.47047 * 210.02388 * 1 2 3 23 23 H 1.09007 * 109.46958 * 330.02235 * 1 2 3 24 24 H 1.08001 * 125.56929 * 359.96310 * 3 2 1 25 25 H 1.08000 * 126.83712 * 180.02562 * 4 3 2 26 26 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 27 27 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 28 28 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 29 29 H 1.09004 * 109.47066 * 299.99732 * 10 9 8 30 30 H 1.09000 * 109.47665 * 59.99541 * 10 9 8 31 31 H 0.97000 * 119.99258 * 359.97438 * 11 10 9 32 32 H 0.96995 * 120.00148 * 179.97438 * 15 14 12 33 33 H 1.08004 * 125.80516 * 0.06066 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5375 0.7491 0.0006 5 6 3.5462 -0.7177 0.0003 6 6 4.7284 -1.5958 0.0002 7 8 4.5885 -2.8041 -0.0005 8 7 5.9653 -1.0607 0.0010 9 6 7.1414 -1.9342 -0.0053 10 6 8.4109 -1.0804 -0.0099 11 7 9.5870 -1.9539 -0.0155 12 6 10.8438 -1.4102 -0.0199 13 1 10.9680 -0.3373 -0.0196 14 6 11.9581 -2.2379 -0.0246 15 7 11.8067 -3.5453 -0.0245 16 14 13.6725 -1.4962 -0.0313 17 1 14.1323 -1.3001 1.3671 18 1 14.6054 -2.4122 -0.7353 19 1 13.6426 -0.1866 -0.7308 20 6 2.2345 -1.1051 -0.0051 21 1 -0.3633 -0.0004 -1.0276 22 1 -0.3633 -0.8897 0.5142 23 1 -0.3633 0.8903 0.5135 24 1 1.8829 2.1373 -0.0006 25 1 4.3981 1.4016 0.0011 26 1 6.0769 -0.0971 0.0012 27 1 7.1306 -2.5644 0.8841 28 1 7.1227 -2.5624 -0.8958 29 1 8.4217 -0.4503 -0.8993 30 1 8.4296 -0.4522 0.8806 31 1 9.4754 -2.9174 -0.0154 32 1 12.5854 -4.1237 -0.0282 33 1 1.8767 -2.1241 -0.0108 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001125659166.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:05 Heat of formation + Delta-G solvation = -1.710346 kcal Electronic energy + Delta-G solvation = -15660.918494 eV Core-core repulsion = 12914.820116 eV Total energy + Delta-G solvation = -2746.098378 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.10636 -40.18102 -37.26371 -35.44404 -33.75479 -32.98406 -30.23191 -29.49814 -27.36248 -25.57658 -23.57575 -22.90530 -21.04153 -20.57372 -19.33390 -18.78049 -17.06331 -16.65637 -16.53131 -16.42775 -16.08937 -15.27473 -15.06912 -15.00774 -14.81623 -14.25080 -13.88153 -13.27504 -13.17200 -13.03299 -12.97285 -12.94601 -12.64685 -12.47972 -12.07394 -11.85285 -11.03263 -10.98406 -10.15895 -9.49206 -9.27030 -9.06389 -7.95897 -5.27729 0.77251 1.48972 1.52001 1.55469 1.60445 1.91555 2.37794 2.59245 2.61840 3.38071 3.93022 4.02278 4.06253 4.10111 4.18350 4.23272 4.35912 4.49839 4.58623 4.63361 4.77459 5.01906 5.04741 5.13974 5.18067 5.43347 5.50792 5.78523 6.08605 6.24691 6.37927 6.67909 7.30629 7.33398 8.02103 8.26153 9.28049 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.073307 B = 0.003554 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.861375 B = 7876.263191 C = 8232.361175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.443 5.443 3 C -0.007 4.007 4 C -0.185 4.185 5 C -0.267 4.267 6 C 0.582 3.418 7 O -0.604 6.604 8 N -0.708 5.708 9 C 0.129 3.871 10 C 0.151 3.849 11 N -0.748 5.748 12 C -0.249 4.249 13 H 0.084 0.916 14 C -0.078 4.078 15 N -0.972 5.972 16 Si 0.982 3.018 17 H -0.285 1.285 18 H -0.296 1.296 19 H -0.265 1.265 20 C 0.067 3.933 21 H 0.088 0.912 22 H 0.094 0.906 23 H 0.109 0.891 24 H 0.205 0.795 25 H 0.160 0.840 26 H 0.414 0.586 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.374 0.626 32 H 0.253 0.747 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.254 13.140 0.083 28.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.117 5.117 3 C -0.134 4.134 4 C -0.209 4.209 5 C -0.277 4.277 6 C 0.373 3.627 7 O -0.488 6.488 8 N -0.359 5.359 9 C 0.004 3.996 10 C 0.024 3.976 11 N -0.391 5.391 12 C -0.380 4.380 13 H 0.102 0.898 14 C -0.270 4.270 15 N -0.622 5.622 16 Si 0.810 3.190 17 H -0.212 1.212 18 H -0.222 1.222 19 H -0.190 1.190 20 C -0.070 4.070 21 H 0.106 0.894 22 H 0.113 0.887 23 H 0.128 0.872 24 H 0.221 0.779 25 H 0.178 0.822 26 H 0.251 0.749 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.205 0.795 32 H 0.061 0.939 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -25.600 12.508 0.079 28.493 hybrid contribution 1.245 -0.222 -0.007 1.265 sum -24.355 12.285 0.072 27.278 Atomic orbital electron populations 1.22461 0.74130 1.06376 1.04929 1.43942 1.08422 1.05084 1.54297 1.22327 0.89880 0.92646 1.08523 1.22325 0.98033 0.91867 1.08659 1.20316 0.92013 0.94594 1.20786 1.17951 0.83300 0.86899 0.74546 1.90729 1.87302 1.16914 1.53831 1.45503 1.04507 1.10912 1.75014 1.21132 0.84349 0.93158 1.00934 1.20827 0.84742 0.92815 0.99235 1.42441 1.01473 1.05401 1.89775 1.19673 0.84113 0.92487 1.41759 0.89845 1.25706 1.02223 0.95801 1.03310 1.69844 1.29936 1.03297 1.59164 0.85023 0.79011 0.77470 0.77515 1.21215 1.22240 1.18963 1.21898 0.89756 0.92845 1.02501 0.89387 0.88682 0.87213 0.77854 0.82239 0.74917 0.93008 0.93017 0.94454 0.94451 0.79468 0.93869 0.80548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.28 11.03 127.77 1.41 1.69 16 2 N -0.44 -6.27 3.09 -547.89 -1.69 -7.96 16 3 C -0.01 -0.10 11.34 83.12 0.94 0.85 16 4 C -0.19 -3.56 10.56 23.62 0.25 -3.31 16 5 C -0.27 -7.06 6.29 -19.04 -0.12 -7.18 16 6 C 0.58 20.05 7.81 86.62 0.68 20.72 16 7 O -0.60 -25.82 16.91 -4.14 -0.07 -25.89 16 8 N -0.71 -22.46 5.55 -466.52 -2.59 -25.05 16 9 C 0.13 4.95 5.79 86.38 0.50 5.45 16 10 C 0.15 6.17 6.37 86.38 0.55 6.72 16 11 N -0.75 -39.73 5.60 -343.45 -1.92 -41.66 16 12 C -0.25 -14.17 9.99 84.03 0.84 -13.33 16 13 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 14 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 15 N -0.97 -61.33 13.06 21.65 0.28 -61.04 16 16 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 17 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 18 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 C 0.07 1.45 11.12 83.91 0.93 2.39 16 21 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 22 H 0.09 0.29 8.13 -2.39 -0.02 0.27 16 23 H 0.11 0.02 8.13 -2.38 -0.02 0.00 16 24 H 0.20 1.12 8.06 -2.91 -0.02 1.10 16 25 H 0.16 2.44 7.70 -2.91 -0.02 2.42 16 26 H 0.41 10.40 7.60 -92.71 -0.70 9.69 16 27 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.37 21.42 7.67 -92.71 -0.71 20.71 16 32 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.18 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -78.23 293.07 2.19 -76.04 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: -0.29 Total: 27.08 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 6.45 Total: 9.87 kcal Atomic # 7 Polarization: -129.79 SS G_CDS: -5.92 Total: -135.71 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.07 Total: -25.89 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -78.23 2.19 -76.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125659166.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.333 kcal (2) G-P(sol) polarization free energy of solvation -78.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds