Wall clock time and date at job start Mon Mar 30 2020 17:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47254 * 2 1 4 4 H 1.09003 * 109.46441 * 55.00032 * 3 2 1 5 5 C 1.53000 * 109.47407 * 175.00017 * 3 2 1 6 6 N 1.46499 * 109.47485 * 295.00679 * 3 2 1 7 7 C 1.39880 * 120.00334 * 155.00021 * 6 3 2 8 8 C 1.39096 * 119.95963 * 0.26648 * 7 6 3 9 9 C 1.38619 * 120.46671 * 180.24008 * 8 7 6 10 10 C 1.37583 * 120.38546 * 359.48369 * 9 8 7 11 11 C 1.40789 * 119.90811 * 0.26477 * 10 9 8 12 12 C 1.41321 * 120.22946 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99784 * 154.69201 * 12 11 10 14 14 C 1.39921 * 119.99888 * 334.68959 * 12 11 10 15 15 N 1.30849 * 119.99945 * 342.89061 * 14 12 11 16 16 Si 1.86798 * 119.99984 * 162.89444 * 14 12 11 17 17 H 1.48497 * 109.47654 * 89.99825 * 16 14 12 18 18 H 1.48504 * 109.47016 * 210.00087 * 16 14 12 19 19 H 1.48502 * 109.46877 * 329.99484 * 16 14 12 20 20 C 1.38594 * 119.96232 * 179.97438 * 7 6 3 21 21 F 1.35101 * 120.18641 * 359.97438 * 20 7 6 22 22 H 1.09006 * 109.47070 * 59.99809 * 1 2 3 23 23 H 1.09001 * 109.47189 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47572 * 299.99642 * 1 2 3 25 25 H 1.09002 * 109.46899 * 240.00455 * 2 1 3 26 26 H 1.08993 * 109.47326 * 120.00286 * 2 1 3 27 27 H 1.09000 * 109.46797 * 59.99991 * 5 3 2 28 28 H 1.08994 * 109.46918 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.47114 * 300.00234 * 5 3 2 30 30 H 0.97005 * 119.99154 * 334.98964 * 6 3 2 31 31 H 1.07997 * 119.77028 * 359.97438 * 8 7 6 32 32 H 1.07998 * 119.80971 * 179.77090 * 9 8 7 33 33 H 1.07998 * 120.04902 * 180.23433 * 10 9 8 34 34 H 0.97002 * 120.00452 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4444 0.1257 6 7 1.6523 2.0976 -1.2517 7 6 1.5208 3.4893 -1.3012 8 6 1.7636 4.2510 -0.1629 9 6 1.6315 5.6304 -0.1988 10 6 1.2686 6.2646 -1.3646 11 6 1.0241 5.5098 -2.5276 12 6 0.6514 6.1543 -3.7288 13 1 0.8542 5.6836 -4.6795 14 6 0.0198 7.4021 -3.6865 15 7 -0.5252 7.8220 -2.5734 16 14 -0.0455 8.4684 -5.2188 17 1 -1.2734 8.1506 -5.9911 18 1 -0.0650 9.9001 -4.8251 19 1 1.1501 8.2022 -6.0584 20 6 1.1545 4.1083 -2.4860 21 9 0.9244 3.3712 -3.5946 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 3.9994 0.9053 -0.7161 28 1 3.9280 2.4720 0.1262 29 1 3.8532 0.9570 1.0571 30 1 1.4871 1.5662 -2.0462 31 1 2.0529 3.7639 0.7565 32 1 1.8191 6.2111 0.6922 33 1 1.1710 7.3399 -1.3874 34 1 -0.9628 8.6872 -2.5439 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167998369.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:42 Heat of formation + Delta-G solvation = -45.015611 kcal Electronic energy + Delta-G solvation = -16745.399503 eV Core-core repulsion = 13977.503306 eV Total energy + Delta-G solvation = -2767.896197 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -47.03827 -38.08834 -36.28294 -33.75758 -31.89624 -29.66248 -29.45579 -26.91999 -25.26475 -23.47138 -21.55216 -20.61946 -19.70683 -17.48910 -16.06357 -15.77559 -15.36846 -14.91117 -14.13202 -13.92156 -13.69897 -13.54377 -13.29888 -12.97846 -12.63819 -12.20089 -11.75925 -11.63116 -11.58227 -11.30578 -11.12189 -10.97748 -10.89831 -10.67923 -10.48820 -10.36336 -9.81720 -9.46936 -9.29517 -8.80578 -7.34054 -6.79160 -6.21003 -4.37236 2.75590 3.05047 3.07885 3.13244 3.25397 3.93265 4.19479 4.62609 4.93611 5.21858 5.26400 5.60650 5.62140 5.75155 5.84668 5.93694 5.99201 6.03651 6.09052 6.29102 6.31397 6.39060 6.52143 6.72280 6.94777 7.00479 7.20408 7.33257 7.66099 7.79069 8.05764 8.15236 8.37013 8.55058 8.67556 8.82481 9.00249 10.16499 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.039860 B = 0.006358 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.293907 B = 4403.005813 C = 4677.862519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C 0.155 3.845 4 H 0.075 0.925 5 C -0.167 4.167 6 N -0.752 5.752 7 C 0.208 3.792 8 C -0.287 4.287 9 C -0.078 4.078 10 C -0.184 4.184 11 C 0.118 3.882 12 C -0.454 4.454 13 H 0.080 0.920 14 C 0.078 3.922 15 N -0.788 5.788 16 Si 0.911 3.089 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.099 4.099 21 F -0.168 7.168 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.390 0.610 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.121 0.879 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.924 -7.759 4.171 9.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C 0.049 3.951 4 H 0.093 0.907 5 C -0.226 4.226 6 N -0.385 5.385 7 C 0.108 3.892 8 C -0.310 4.310 9 C -0.098 4.098 10 C -0.205 4.205 11 C 0.114 3.886 12 C -0.483 4.483 13 H 0.098 0.902 14 C -0.141 4.141 15 N -0.412 5.412 16 Si 0.735 3.265 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.123 4.123 21 F -0.148 7.148 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.224 0.776 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.139 0.861 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.816 -7.608 4.422 9.239 hybrid contribution -0.220 0.207 -1.062 1.105 sum 2.596 -7.401 3.360 8.532 Atomic orbital electron populations 1.21740 0.95490 1.00873 1.02682 1.21795 0.96518 0.96383 1.02008 1.20717 0.93621 0.92184 0.88582 0.90706 1.22302 0.97051 1.02537 1.00733 1.44417 1.79149 1.03667 1.11310 1.17419 0.96125 0.82497 0.93136 1.19764 1.21500 0.93661 0.96091 1.20478 0.98912 0.93421 0.96942 1.21006 1.07456 0.99727 0.92307 1.17405 0.88699 0.88303 0.94167 1.19488 1.33226 1.01655 0.93928 0.90154 1.25904 0.92820 0.97720 0.97652 1.69850 1.24470 1.19230 1.27697 0.86275 0.79833 0.78731 0.81705 1.19423 1.20008 1.18369 1.17292 1.23662 0.89278 0.82067 1.91197 1.94286 1.77004 1.52300 0.92093 0.93272 0.92764 0.91980 0.91302 0.92993 0.91870 0.92842 0.77606 0.88612 0.89056 0.86127 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.80 37.16 0.36 -1.51 16 2 C -0.13 -1.55 5.47 -26.73 -0.15 -1.70 16 3 C 0.16 2.31 2.26 -67.93 -0.15 2.15 16 4 H 0.07 1.18 6.49 -51.93 -0.34 0.84 16 5 C -0.17 -2.29 9.41 37.16 0.35 -1.94 16 6 N -0.75 -13.96 4.71 -52.14 -0.25 -14.21 16 7 C 0.21 4.76 6.64 -83.74 -0.56 4.21 16 8 C -0.29 -6.37 8.85 -39.12 -0.35 -6.72 16 9 C -0.08 -1.83 10.01 -39.68 -0.40 -2.22 16 10 C -0.18 -4.81 8.69 -38.86 -0.34 -5.15 16 11 C 0.12 3.25 5.57 -106.78 -0.59 2.66 16 12 C -0.45 -12.49 8.77 -37.78 -0.33 -12.82 16 13 H 0.08 2.19 7.74 -52.48 -0.41 1.79 16 14 C 0.08 1.98 5.15 -17.34 -0.09 1.89 16 15 N -0.79 -20.43 10.96 55.55 0.61 -19.82 16 16 Si 0.91 18.93 29.59 -169.99 -5.03 13.90 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 19 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 20 C -0.10 -2.57 7.31 -38.47 -0.28 -2.85 16 21 F -0.17 -4.33 16.08 2.25 0.04 -4.29 16 22 H 0.06 0.88 7.75 -51.93 -0.40 0.47 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.98 7.67 -51.93 -0.40 0.58 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.39 7.08 8.08 -40.82 -0.33 6.75 16 31 H 0.10 1.89 6.05 -52.49 -0.32 1.57 16 32 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.12 3.22 6.19 -52.49 -0.32 2.89 16 34 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 LS Contribution 285.78 15.07 4.31 4.31 Total: -1.00 -27.92 285.78 -7.45 -35.37 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -4.61 Total: 8.76 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -2.52 Total: -24.01 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.36 Total: -34.03 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.04 Total: -4.29 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.92 -7.45 -35.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167998369.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.641 kcal (2) G-P(sol) polarization free energy of solvation -27.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds