Wall clock time and date at job start Mon Mar 30 2020 17:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47254 * 2 1 4 4 H 1.09003 * 109.46441 * 55.00032 * 3 2 1 5 5 C 1.53000 * 109.47407 * 175.00017 * 3 2 1 6 6 N 1.46499 * 109.47485 * 295.00679 * 3 2 1 7 7 C 1.39880 * 120.00334 * 155.00021 * 6 3 2 8 8 C 1.39096 * 119.95963 * 0.26648 * 7 6 3 9 9 C 1.38619 * 120.46671 * 180.24008 * 8 7 6 10 10 C 1.37583 * 120.38546 * 359.48369 * 9 8 7 11 11 C 1.40789 * 119.90811 * 0.26477 * 10 9 8 12 12 C 1.41321 * 120.22946 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99784 * 154.69201 * 12 11 10 14 14 C 1.39921 * 119.99888 * 334.68959 * 12 11 10 15 15 N 1.30849 * 119.99945 * 342.89061 * 14 12 11 16 16 Si 1.86798 * 119.99984 * 162.89444 * 14 12 11 17 17 H 1.48497 * 109.47654 * 89.99825 * 16 14 12 18 18 H 1.48504 * 109.47016 * 210.00087 * 16 14 12 19 19 H 1.48502 * 109.46877 * 329.99484 * 16 14 12 20 20 C 1.38594 * 119.96232 * 179.97438 * 7 6 3 21 21 F 1.35101 * 120.18641 * 359.97438 * 20 7 6 22 22 H 1.09006 * 109.47070 * 59.99809 * 1 2 3 23 23 H 1.09001 * 109.47189 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47572 * 299.99642 * 1 2 3 25 25 H 1.09002 * 109.46899 * 240.00455 * 2 1 3 26 26 H 1.08993 * 109.47326 * 120.00286 * 2 1 3 27 27 H 1.09000 * 109.46797 * 59.99991 * 5 3 2 28 28 H 1.08994 * 109.46918 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.47114 * 300.00234 * 5 3 2 30 30 H 0.97005 * 119.99154 * 334.98964 * 6 3 2 31 31 H 1.07997 * 119.77028 * 359.97438 * 8 7 6 32 32 H 1.07998 * 119.80971 * 179.77090 * 9 8 7 33 33 H 1.07998 * 120.04902 * 180.23433 * 10 9 8 34 34 H 0.97002 * 120.00452 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4444 0.1257 6 7 1.6523 2.0976 -1.2517 7 6 1.5208 3.4893 -1.3012 8 6 1.7636 4.2510 -0.1629 9 6 1.6315 5.6304 -0.1988 10 6 1.2686 6.2646 -1.3646 11 6 1.0241 5.5098 -2.5276 12 6 0.6514 6.1543 -3.7288 13 1 0.8542 5.6836 -4.6795 14 6 0.0198 7.4021 -3.6865 15 7 -0.5252 7.8220 -2.5734 16 14 -0.0455 8.4684 -5.2188 17 1 -1.2734 8.1506 -5.9911 18 1 -0.0650 9.9001 -4.8251 19 1 1.1501 8.2022 -6.0584 20 6 1.1545 4.1083 -2.4860 21 9 0.9244 3.3712 -3.5946 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 3.9994 0.9053 -0.7161 28 1 3.9280 2.4720 0.1262 29 1 3.8532 0.9570 1.0571 30 1 1.4871 1.5662 -2.0462 31 1 2.0529 3.7639 0.7565 32 1 1.8191 6.2111 0.6922 33 1 1.1710 7.3399 -1.3874 34 1 -0.9628 8.6872 -2.5439 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167998369.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:42 Heat of formation + Delta-G solvation = -59.998527 kcal Electronic energy + Delta-G solvation = -16746.049211 eV Core-core repulsion = 13977.503306 eV Total energy + Delta-G solvation = -2768.545905 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = -0.14 seconds Orbital eigenvalues (eV) -49.04098 -39.72340 -37.85892 -35.55170 -33.40329 -31.43202 -30.79399 -28.61487 -27.20733 -24.57802 -23.16711 -22.46532 -21.16115 -19.32197 -17.93585 -17.50299 -17.02361 -16.59360 -15.96748 -15.61923 -15.13298 -14.85186 -14.76627 -14.46788 -14.18402 -13.68770 -13.47319 -13.34190 -12.99252 -12.77605 -12.72089 -12.55541 -12.17295 -12.10462 -11.94791 -11.71995 -11.50235 -11.31383 -11.11755 -10.53023 -9.29772 -8.68817 -7.95927 -6.40288 0.89624 1.17437 1.36997 1.49127 1.54818 2.20087 2.70320 2.72758 3.64531 3.86132 4.10028 4.18673 4.23385 4.48227 4.54348 4.73599 4.79274 4.85694 4.91022 5.02016 5.05085 5.08939 5.14339 5.22427 5.29409 5.38049 5.46145 5.52368 5.77630 5.94027 6.11546 6.21003 6.50968 6.74757 6.84568 6.93253 7.11949 8.29075 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.039860 B = 0.006358 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.293907 B = 4403.005813 C = 4677.862519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.147 3.853 4 H 0.070 0.930 5 C -0.162 4.162 6 N -0.745 5.745 7 C 0.217 3.783 8 C -0.283 4.283 9 C -0.072 4.072 10 C -0.213 4.213 11 C 0.089 3.911 12 C -0.496 4.496 13 H 0.066 0.934 14 C 0.039 3.961 15 N -0.815 5.815 16 Si 0.984 3.016 17 H -0.262 1.262 18 H -0.258 1.258 19 H -0.262 1.262 20 C -0.137 4.137 21 F -0.175 7.175 22 H 0.033 0.967 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.391 0.609 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.450 -8.763 5.381 10.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C 0.043 3.957 4 H 0.088 0.912 5 C -0.221 4.221 6 N -0.376 5.376 7 C 0.115 3.885 8 C -0.306 4.306 9 C -0.091 4.091 10 C -0.234 4.234 11 C 0.085 3.915 12 C -0.525 4.525 13 H 0.084 0.916 14 C -0.177 4.177 15 N -0.440 5.440 16 Si 0.804 3.196 17 H -0.187 1.187 18 H -0.181 1.181 19 H -0.186 1.186 20 C -0.161 4.161 21 F -0.155 7.155 22 H 0.053 0.947 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.117 0.883 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.225 0.775 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.125 0.875 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.351 -8.661 5.663 10.877 hybrid contribution -0.362 0.369 -1.311 1.409 sum 2.989 -8.291 4.353 9.830 Atomic orbital electron populations 1.21740 0.96009 1.01834 1.01227 1.21771 0.95938 0.94399 1.03768 1.21044 0.94697 0.93626 0.86364 0.91161 1.22240 0.95623 1.01639 1.02564 1.44633 1.77995 1.02051 1.12967 1.17538 0.94285 0.84602 0.92112 1.20109 1.20210 0.93335 0.96918 1.20825 0.97046 0.94295 0.96960 1.20955 1.09983 0.99188 0.93263 1.17787 0.89320 0.89406 0.94952 1.19650 1.35683 1.03658 0.93548 0.91576 1.26733 0.91647 0.98168 1.01118 1.69877 1.24542 1.19998 1.29574 0.85182 0.79705 0.77326 0.77350 1.18719 1.18149 1.18581 1.17615 1.25951 0.89387 0.83173 1.91156 1.94537 1.76953 1.52821 0.94742 0.91183 0.92992 0.91346 0.88308 0.92775 0.93978 0.89670 0.77504 0.85467 0.86038 0.87484 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.80 71.98 0.71 -2.70 16 2 C -0.12 -2.50 5.47 30.59 0.17 -2.33 16 3 C 0.15 3.98 2.26 44.99 0.10 4.09 16 4 H 0.07 2.00 6.49 -2.39 -0.02 1.98 16 5 C -0.16 -3.93 9.41 71.98 0.68 -3.25 16 6 N -0.75 -26.86 4.71 -318.88 -1.50 -28.36 16 7 C 0.22 9.90 6.64 38.15 0.25 10.15 16 8 C -0.28 -12.17 8.85 22.57 0.20 -11.97 16 9 C -0.07 -3.33 10.01 22.21 0.22 -3.10 16 10 C -0.21 -11.43 8.69 22.74 0.20 -11.23 16 11 C 0.09 5.10 5.57 -21.27 -0.12 4.98 16 12 C -0.50 -28.61 8.77 23.44 0.21 -28.40 16 13 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 14 C 0.04 2.06 5.15 85.25 0.44 2.50 16 15 N -0.81 -43.23 10.96 21.82 0.24 -42.99 16 16 Si 0.98 39.42 29.59 68.60 2.03 41.45 16 17 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 18 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 19 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 20 C -0.14 -7.35 7.31 22.99 0.17 -7.18 16 21 F -0.18 -9.37 16.08 44.97 0.72 -8.64 16 22 H 0.03 0.95 7.75 -2.38 -0.02 0.93 16 23 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.04 1.20 7.67 -2.39 -0.02 1.18 16 29 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.39 13.98 8.08 -92.70 -0.75 13.23 16 31 H 0.13 4.64 6.05 -2.91 -0.02 4.62 16 32 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 33 H 0.11 5.92 6.19 -2.91 -0.02 5.90 16 34 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 Total: -1.00 -62.58 285.78 5.06 -57.52 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.35 Total: 29.48 kcal Atomic # 6 Polarization: -51.67 SS G_CDS: 3.22 Total: -48.45 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -1.26 Total: -71.35 kcal Atomic # 9 Polarization: -9.37 SS G_CDS: 0.72 Total: -8.64 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -62.58 5.06 -57.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167998369.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.479 kcal (2) G-P(sol) polarization free energy of solvation -62.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.14 seconds