Wall clock time and date at job start Mon Mar 30 2020 17:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47225 * 2 1 4 4 C 1.53004 * 109.47384 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47490 * 180.02562 * 4 3 2 6 6 C 1.36752 * 120.00124 * 90.00060 * 5 4 3 7 7 H 1.08006 * 119.99666 * 219.60601 * 6 5 4 8 8 C 1.39096 * 120.00177 * 39.60084 * 6 5 4 9 9 N 1.31330 * 120.00406 * 18.53770 * 8 6 5 10 10 Si 1.86799 * 120.00066 * 198.53933 * 8 6 5 11 11 H 1.48495 * 109.47282 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47665 * 120.00101 * 10 8 6 13 13 H 1.48503 * 109.47374 * 239.99904 * 10 8 6 14 14 C 1.34771 * 120.00080 * 269.99606 * 5 4 3 15 15 O 1.21665 * 119.99903 * 5.23488 * 14 5 4 16 16 C 1.47219 * 120.00521 * 185.23229 * 14 5 4 17 17 N 1.31690 * 125.85356 * 5.26734 * 16 14 5 18 18 C 1.33096 * 109.21863 * 179.86946 * 17 16 14 19 19 C 1.35580 * 108.39732 * 0.39211 * 18 17 16 20 20 N 1.36013 * 107.08469 * 359.76457 * 19 18 17 21 21 H 0.97003 * 126.49768 * 179.97438 * 20 19 18 22 22 H 1.09008 * 109.46575 * 299.99961 * 1 2 3 23 23 H 1.09002 * 109.47163 * 59.99200 * 1 2 3 24 24 H 1.08992 * 109.47024 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46575 * 240.00039 * 2 1 3 26 26 H 1.08993 * 109.46992 * 120.00735 * 2 1 3 27 27 H 1.09000 * 109.47563 * 60.00604 * 3 2 1 28 28 H 1.09005 * 109.47732 * 299.99946 * 3 2 1 29 29 H 1.08999 * 109.47071 * 59.99142 * 4 3 2 30 30 H 1.09002 * 109.46646 * 300.00581 * 4 3 2 31 31 H 0.96995 * 120.00948 * 174.97697 * 9 8 6 32 32 H 1.07998 * 125.80295 * 180.16266 * 18 17 16 33 33 H 1.08001 * 126.45434 * 179.76125 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2869 3.4676 1.1845 7 1 4.0228 4.5092 1.2926 8 6 4.8593 2.7810 2.2503 9 7 5.5068 1.6586 2.0366 10 14 4.7068 3.4554 3.9856 11 1 3.9358 4.7242 3.9577 12 1 4.0028 2.4666 4.8411 13 1 6.0613 3.7120 4.5378 14 6 4.2827 3.4596 -1.1669 15 8 3.9901 2.9223 -2.2185 16 6 4.8815 4.8045 -1.1691 17 7 5.3302 5.4508 -0.1131 18 6 5.8034 6.6354 -0.4927 19 6 5.6428 6.7504 -1.8341 20 7 5.0620 5.5992 -2.2671 21 1 4.8211 5.3831 -3.1816 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.6768 1.9564 -0.8900 29 1 3.9330 0.9286 -0.8908 30 1 3.9337 0.9284 0.8891 31 1 5.9678 1.2178 2.7674 32 1 6.2377 7.3802 0.1576 33 1 5.9233 7.5966 -2.4438 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187737275.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:43:12 Heat of formation + Delta-G solvation = 2.899550 kcal Electronic energy + Delta-G solvation = -17055.460514 eV Core-core repulsion = 14309.562036 eV Total energy + Delta-G solvation = -2745.898478 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.82523 -40.16818 -37.18412 -35.57775 -33.62650 -33.15607 -30.98611 -29.46541 -26.85236 -25.23484 -23.14214 -22.20697 -21.93820 -21.04845 -20.00675 -17.85861 -17.42526 -16.65686 -16.21454 -16.15025 -15.89445 -15.15106 -14.84214 -14.64983 -14.30634 -14.21653 -13.77039 -13.56877 -13.07742 -12.93043 -12.77715 -12.12259 -12.03347 -11.96608 -11.82807 -11.41051 -11.11774 -11.00217 -10.82635 -10.48425 -9.50889 -9.23164 -8.24610 -5.92899 0.65601 1.46738 1.49209 1.63084 1.93516 2.02481 2.41491 2.68278 3.11897 3.15632 3.90851 4.09832 4.17612 4.30522 4.38706 4.50818 4.58633 4.64858 4.84376 4.87324 5.00263 5.06145 5.19049 5.22236 5.37430 5.44295 5.53909 5.66548 5.89680 5.98806 6.44577 6.56002 7.07001 7.26997 7.54400 7.92911 8.79445 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.017093 B = 0.010874 C = 0.007290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.750822 B = 2574.264631 C = 3840.006715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.114 4.114 4 C 0.116 3.884 5 N -0.414 5.414 6 C -0.313 4.313 7 H 0.103 0.897 8 C 0.005 3.995 9 N -0.898 5.898 10 Si 0.983 3.017 11 H -0.262 1.262 12 H -0.274 1.274 13 H -0.281 1.281 14 C 0.514 3.486 15 O -0.640 6.640 16 C 0.138 3.862 17 N -0.445 5.445 18 C -0.074 4.074 19 C -0.012 4.012 20 N -0.534 5.534 21 H 0.431 0.569 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.096 0.904 31 H 0.272 0.728 32 H 0.195 0.805 33 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.474 5.368 -2.901 7.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.153 4.153 4 C -0.007 4.007 5 N -0.129 5.129 6 C -0.442 4.442 7 H 0.121 0.879 8 C -0.198 4.198 9 N -0.537 5.537 10 Si 0.807 3.193 11 H -0.186 1.186 12 H -0.199 1.199 13 H -0.207 1.207 14 C 0.303 3.697 15 O -0.530 6.530 16 C -0.122 4.122 17 N -0.167 5.167 18 C -0.226 4.226 19 C -0.151 4.151 20 N -0.137 5.137 21 H 0.271 0.729 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.212 0.788 33 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.617 4.551 -2.432 6.301 hybrid contribution 0.359 0.394 -0.492 0.726 sum -3.258 4.945 -2.924 6.604 Atomic orbital electron populations 1.21712 0.94095 1.02392 1.01787 1.21410 0.97156 0.94853 1.01912 1.21764 0.94823 0.98109 1.00577 1.21539 0.93793 0.83288 1.02118 1.43494 1.52391 1.12366 1.04620 1.19940 1.39999 0.97200 0.87071 0.87920 1.26193 0.93856 0.95985 1.03717 1.69904 1.30415 1.19290 1.34085 0.85019 0.78035 0.78664 0.77533 1.18610 1.19947 1.20722 1.17318 0.83035 0.84866 0.84436 1.90592 1.60708 1.69516 1.32180 1.22530 1.09978 0.96164 0.83497 1.70761 1.11720 1.06202 1.28042 1.23267 1.07801 0.96794 0.94755 1.23730 1.02596 0.91499 0.97274 1.43277 1.45560 1.14012 1.10859 0.72859 0.92626 0.92943 0.90977 0.92194 0.91885 0.92577 0.94060 0.94318 0.88652 0.91870 0.78782 0.74985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.91 71.98 0.71 -3.08 16 2 C -0.12 -3.83 5.93 30.59 0.18 -3.65 16 3 C -0.11 -4.79 5.54 30.59 0.17 -4.62 16 4 C 0.12 5.79 4.96 86.38 0.43 6.22 16 5 N -0.41 -22.50 2.50 -639.53 -1.60 -24.10 16 6 C -0.31 -17.05 7.68 84.13 0.65 -16.40 16 7 H 0.10 5.69 6.35 -2.91 -0.02 5.67 16 8 C 0.00 0.25 5.01 84.97 0.43 0.67 16 9 N -0.90 -49.60 11.42 21.69 0.25 -49.35 16 10 Si 0.98 42.22 29.60 68.60 2.03 44.25 16 11 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 13 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 14 C 0.51 27.55 7.61 86.60 0.66 28.21 16 15 O -0.64 -35.33 16.73 -4.24 -0.07 -35.40 16 16 C 0.14 6.46 7.67 136.18 1.04 7.50 16 17 N -0.45 -20.50 8.15 -189.59 -1.54 -22.04 16 18 C -0.07 -2.50 11.85 83.89 0.99 -1.51 16 19 C -0.01 -0.34 12.03 83.43 1.00 0.67 16 20 N -0.53 -18.41 6.18 -187.63 -1.16 -19.57 16 21 H 0.43 12.70 8.96 -92.71 -0.83 11.86 16 22 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 23 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.04 2.01 7.50 -2.39 -0.02 1.99 16 30 H 0.10 5.04 5.55 -2.39 -0.01 5.03 16 31 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.20 5.12 8.06 -2.91 -0.02 5.10 16 33 H 0.23 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -70.13 283.87 4.46 -65.67 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.29 Total: 26.54 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 6.27 Total: 14.00 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -4.05 Total: -115.07 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -0.07 Total: -35.40 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -70.13 4.46 -65.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187737275.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.570 kcal (2) G-P(sol) polarization free energy of solvation -70.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds