Wall clock time and date at job start Mon Mar 30 2020 17:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86799 * 119.99364 * 2 1 4 4 H 1.48510 * 109.46788 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47398 * 299.99939 * 3 2 1 6 6 H 1.48493 * 109.47169 * 60.00458 * 3 2 1 7 7 C 1.40047 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99861 * 180.02562 * 7 2 1 9 9 C 1.46374 * 119.99979 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00204 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00046 * 180.02562 * 9 7 2 12 12 C 1.46502 * 120.00423 * 179.97438 * 11 9 7 13 13 H 1.09007 * 109.06774 * 35.94154 * 12 11 9 14 14 C 1.52562 * 109.07983 * 276.95400 * 12 11 9 15 15 C 1.53738 * 111.49664 * 184.70489 * 14 12 11 16 16 C 1.51784 * 107.24307 * 57.81308 * 15 14 12 17 17 H 1.09010 * 110.36825 * 55.69571 * 16 15 14 18 18 C 1.53265 * 115.79869 * 182.93066 * 16 15 14 19 19 C 1.55317 * 102.93914 * 157.15404 * 18 16 15 20 20 C 1.54907 * 106.37723 * 336.04961 * 19 18 16 21 21 C 1.52506 * 105.32806 * 356.54527 * 20 19 18 22 22 H 1.08996 * 109.77076 * 272.19518 * 21 20 19 23 23 C 1.51622 * 116.55029 * 146.64997 * 21 20 19 24 24 H 0.96994 * 120.00330 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99758 * 359.97438 * 11 9 7 26 26 H 1.09000 * 109.07930 * 305.22686 * 14 12 11 27 27 H 1.09006 * 109.07347 * 64.19335 * 14 12 11 28 28 H 1.08997 * 109.90386 * 177.24621 * 15 14 12 29 29 H 1.08995 * 109.90621 * 298.37995 * 15 14 12 30 30 H 1.08997 * 110.72263 * 275.52144 * 18 16 15 31 31 H 1.09007 * 110.71753 * 38.79684 * 18 16 15 32 32 H 1.09002 * 110.07055 * 216.82051 * 19 18 16 33 33 H 1.09004 * 110.07106 * 95.28171 * 19 18 16 34 34 H 1.09004 * 110.26912 * 237.57889 * 20 19 18 35 35 H 1.08997 * 110.27085 * 115.50901 * 20 19 18 36 36 H 1.08992 * 109.89712 * 299.76897 * 23 21 20 37 37 H 1.08998 * 109.89509 * 60.82313 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8818 2.3966 -1.2125 6 1 1.8818 2.3964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0001 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4806 0.0004 11 7 1.9491 -3.6476 -0.0005 12 6 1.2168 -4.9164 0.0000 13 1 0.3161 -4.8080 -0.6044 14 6 0.8168 -5.2608 1.4315 15 6 0.1452 -6.6413 1.5121 16 6 1.1286 -7.6535 0.9534 17 1 2.0769 -7.5962 1.4881 18 6 0.6263 -9.0994 0.8766 19 6 1.5324 -9.7246 -0.2191 20 6 2.0265 -8.5500 -1.0999 21 6 1.3295 -7.3110 -0.5476 22 1 0.3603 -7.1871 -1.0308 23 6 2.1058 -6.0103 -0.6143 24 1 -0.4850 0.8400 0.0004 25 1 2.9192 -3.6475 -0.0009 26 1 1.7073 -5.2606 2.0600 27 1 0.1226 -4.5050 1.7990 28 1 -0.0853 -6.8818 2.5500 29 1 -0.7685 -6.6448 0.9179 30 1 0.7675 -9.6080 1.8302 31 1 -0.4205 -9.1284 0.5740 32 1 0.9588 -10.4288 -0.8219 33 1 2.3814 -10.2302 0.2411 34 1 1.7418 -8.7118 -2.1395 35 1 3.1080 -8.4439 -1.0158 36 1 3.0303 -6.1005 -0.0442 37 1 2.3323 -5.7664 -1.6522 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356833909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:22 Heat of formation + Delta-G solvation = -73.987255 kcal Electronic energy + Delta-G solvation = -17182.453718 eV Core-core repulsion = 14536.761521 eV Total energy + Delta-G solvation = -2645.692197 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.77254 -37.21665 -34.64319 -32.49361 -31.92680 -30.69108 -27.77622 -26.91153 -25.53796 -22.20085 -20.89711 -20.15481 -19.71328 -19.11032 -17.15178 -15.41261 -15.11814 -14.91807 -14.65464 -14.18876 -13.97376 -13.45113 -12.96644 -12.76700 -12.52029 -12.13883 -11.93864 -11.56095 -11.23092 -11.19387 -11.01646 -10.91310 -10.69650 -10.50909 -10.42273 -10.33489 -10.28537 -10.14948 -9.80646 -9.61946 -8.82492 -7.54917 -7.41727 -6.14528 -4.59863 3.14814 3.22936 3.27412 4.13098 4.47453 4.62841 4.70874 4.73346 4.99011 5.24690 5.32532 5.39716 5.55450 5.58861 5.67054 5.74252 5.78562 5.84815 5.86993 5.92680 5.97075 6.08947 6.10912 6.14379 6.22480 6.28158 6.45461 6.51153 6.58188 6.68460 6.88398 6.99798 7.47058 8.00022 8.19658 8.39318 9.06672 9.61339 10.64831 10.84524 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.059542 B = 0.005085 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.143601 B = 5504.959597 C = 5720.624660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.765 5.765 12 C 0.159 3.841 13 H 0.070 0.930 14 C -0.126 4.126 15 C -0.106 4.106 16 C -0.094 4.094 17 H 0.073 0.927 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.093 4.093 22 H 0.072 0.928 23 C -0.112 4.112 24 H 0.267 0.733 25 H 0.378 0.622 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.321 -15.143 0.553 15.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.418 5.418 12 C 0.052 3.948 13 H 0.088 0.912 14 C -0.165 4.165 15 C -0.144 4.144 16 C -0.113 4.113 17 H 0.092 0.908 18 C -0.155 4.155 19 C -0.161 4.161 20 C -0.154 4.154 21 C -0.112 4.112 22 H 0.090 0.910 23 C -0.150 4.150 24 H 0.077 0.923 25 H 0.209 0.791 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.236 -15.010 0.540 15.365 hybrid contribution 0.947 0.850 0.027 1.273 sum 4.183 -14.160 0.567 14.776 Atomic orbital electron populations 1.70033 1.07029 1.27030 1.35701 1.25698 0.94584 1.00229 0.92641 0.86350 0.80509 0.81908 0.78169 1.18819 1.20205 1.20207 1.20944 0.93581 0.89544 1.54306 0.91507 1.18210 0.87230 0.82537 0.76150 1.90590 1.14070 1.86871 1.54823 1.46214 1.08381 1.04892 1.82332 1.20503 0.95402 0.84066 0.94793 0.91225 1.21955 1.00381 0.95941 0.98209 1.21387 0.98066 0.94639 1.00282 1.21921 0.99384 0.93648 0.96312 0.90819 1.22205 0.99318 0.95772 0.98253 1.22492 0.99014 0.97535 0.97014 1.21929 1.00156 0.94470 0.98843 1.21630 0.99737 0.93771 0.96030 0.90957 1.21633 0.98398 0.94026 1.00909 0.92255 0.79066 0.92895 0.91319 0.92426 0.91924 0.92033 0.91613 0.92240 0.92159 0.92052 0.91881 0.91996 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.36 11.83 55.55 0.66 -22.70 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 3 Si 0.91 20.38 29.56 -169.99 -5.02 15.36 16 4 H -0.26 -5.74 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.55 -15.66 9.54 -35.63 -0.34 -16.00 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.56 15.96 7.68 -12.99 -0.10 15.86 16 10 O -0.58 -18.92 14.64 5.20 0.08 -18.85 16 11 N -0.76 -17.33 5.06 -55.04 -0.28 -17.60 16 12 C 0.16 3.08 2.42 -67.76 -0.16 2.91 16 13 H 0.07 1.56 7.58 -51.93 -0.39 1.17 16 14 C -0.13 -2.28 5.36 -26.57 -0.14 -2.43 16 15 C -0.11 -1.53 5.66 -26.96 -0.15 -1.68 16 16 C -0.09 -1.18 2.37 -89.90 -0.21 -1.39 16 17 H 0.07 0.93 8.05 -51.92 -0.42 0.51 16 18 C -0.12 -1.24 6.45 -25.37 -0.16 -1.40 16 19 C -0.12 -1.19 6.87 -24.50 -0.17 -1.36 16 20 C -0.12 -1.25 6.50 -25.98 -0.17 -1.42 16 21 C -0.09 -1.20 2.24 -90.37 -0.20 -1.41 16 22 H 0.07 1.01 7.97 -51.93 -0.41 0.59 16 23 C -0.11 -1.67 5.10 -27.03 -0.14 -1.81 16 24 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 25 H 0.38 7.61 8.57 -40.82 -0.35 7.26 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 1.50 8.09 -51.93 -0.42 1.08 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.93 8.02 -51.93 -0.42 0.51 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.66 8.07 -51.93 -0.42 0.24 16 36 H 0.06 0.87 8.07 -51.93 -0.42 0.45 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 293.81 15.07 4.43 4.43 Total: -1.00 -33.08 293.81 -8.37 -41.45 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -6.18 Total: 5.65 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -2.05 Total: -7.73 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.38 Total: -40.31 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.08 Total: -18.85 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.08 -8.37 -41.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356833909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.534 kcal (2) G-P(sol) polarization free energy of solvation -33.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds