Wall clock time and date at job start Mon Mar 30 2020 17:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86799 * 119.99364 * 2 1 4 4 H 1.48510 * 109.46788 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47398 * 299.99939 * 3 2 1 6 6 H 1.48493 * 109.47169 * 60.00458 * 3 2 1 7 7 C 1.40047 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99861 * 180.02562 * 7 2 1 9 9 C 1.46374 * 119.99979 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00204 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00046 * 180.02562 * 9 7 2 12 12 C 1.46502 * 120.00423 * 179.97438 * 11 9 7 13 13 H 1.09007 * 109.06774 * 35.94154 * 12 11 9 14 14 C 1.52562 * 109.07983 * 276.95400 * 12 11 9 15 15 C 1.53738 * 111.49664 * 184.70489 * 14 12 11 16 16 C 1.51784 * 107.24307 * 57.81308 * 15 14 12 17 17 H 1.09010 * 110.36825 * 55.69571 * 16 15 14 18 18 C 1.53265 * 115.79869 * 182.93066 * 16 15 14 19 19 C 1.55317 * 102.93914 * 157.15404 * 18 16 15 20 20 C 1.54907 * 106.37723 * 336.04961 * 19 18 16 21 21 C 1.52506 * 105.32806 * 356.54527 * 20 19 18 22 22 H 1.08996 * 109.77076 * 272.19518 * 21 20 19 23 23 C 1.51622 * 116.55029 * 146.64997 * 21 20 19 24 24 H 0.96994 * 120.00330 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99758 * 359.97438 * 11 9 7 26 26 H 1.09000 * 109.07930 * 305.22686 * 14 12 11 27 27 H 1.09006 * 109.07347 * 64.19335 * 14 12 11 28 28 H 1.08997 * 109.90386 * 177.24621 * 15 14 12 29 29 H 1.08995 * 109.90621 * 298.37995 * 15 14 12 30 30 H 1.08997 * 110.72263 * 275.52144 * 18 16 15 31 31 H 1.09007 * 110.71753 * 38.79684 * 18 16 15 32 32 H 1.09002 * 110.07055 * 216.82051 * 19 18 16 33 33 H 1.09004 * 110.07106 * 95.28171 * 19 18 16 34 34 H 1.09004 * 110.26912 * 237.57889 * 20 19 18 35 35 H 1.08997 * 110.27085 * 115.50901 * 20 19 18 36 36 H 1.08992 * 109.89712 * 299.76897 * 23 21 20 37 37 H 1.08998 * 109.89509 * 60.82313 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8818 2.3966 -1.2125 6 1 1.8818 2.3964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0001 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4806 0.0004 11 7 1.9491 -3.6476 -0.0005 12 6 1.2168 -4.9164 0.0000 13 1 0.3161 -4.8080 -0.6044 14 6 0.8168 -5.2608 1.4315 15 6 0.1452 -6.6413 1.5121 16 6 1.1286 -7.6535 0.9534 17 1 2.0769 -7.5962 1.4881 18 6 0.6263 -9.0994 0.8766 19 6 1.5324 -9.7246 -0.2191 20 6 2.0265 -8.5500 -1.0999 21 6 1.3295 -7.3110 -0.5476 22 1 0.3603 -7.1871 -1.0308 23 6 2.1058 -6.0103 -0.6143 24 1 -0.4850 0.8400 0.0004 25 1 2.9192 -3.6475 -0.0009 26 1 1.7073 -5.2606 2.0600 27 1 0.1226 -4.5050 1.7990 28 1 -0.0853 -6.8818 2.5500 29 1 -0.7685 -6.6448 0.9179 30 1 0.7675 -9.6080 1.8302 31 1 -0.4205 -9.1284 0.5740 32 1 0.9588 -10.4288 -0.8219 33 1 2.3814 -10.2302 0.2411 34 1 1.7418 -8.7118 -2.1395 35 1 3.1080 -8.4439 -1.0158 36 1 3.0303 -6.1005 -0.0442 37 1 2.3323 -5.7664 -1.6522 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356833909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:21 Heat of formation + Delta-G solvation = -95.824995 kcal Electronic energy + Delta-G solvation = -17183.400673 eV Core-core repulsion = 14536.761521 eV Total energy + Delta-G solvation = -2646.639152 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.99775 -39.15140 -36.23187 -34.59590 -33.52397 -32.05407 -29.23667 -28.31005 -27.21051 -23.42474 -22.61003 -21.20342 -21.05715 -20.59863 -19.18211 -17.48174 -16.51986 -16.24580 -15.83650 -15.67024 -15.57866 -14.80030 -14.48983 -14.25611 -14.14280 -13.58393 -13.38912 -13.04944 -12.92862 -12.76337 -12.63163 -12.27077 -12.03178 -11.97090 -11.81845 -11.62652 -11.42403 -11.26773 -11.15957 -10.95948 -10.79991 -9.82512 -9.42410 -8.28958 -6.85919 1.39107 1.39471 1.57469 2.24238 2.47721 3.07443 3.53755 3.65978 3.68677 3.84627 4.07807 4.21720 4.29481 4.41697 4.47776 4.55947 4.59690 4.73630 4.74988 4.77430 4.92788 5.00545 5.05187 5.15856 5.19782 5.21327 5.24295 5.31414 5.37102 5.40431 5.46780 5.61340 5.65673 5.89480 6.25926 6.34086 6.86678 7.58576 8.51227 8.68626 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.059542 B = 0.005085 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.143601 B = 5504.959597 C = 5720.624660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.999 3.001 4 H -0.246 1.246 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.537 3.463 10 O -0.632 6.632 11 N -0.753 5.753 12 C 0.157 3.843 13 H 0.028 0.972 14 C -0.119 4.119 15 C -0.098 4.098 16 C -0.089 4.089 17 H 0.082 0.918 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.112 4.112 21 C -0.093 4.093 22 H 0.056 0.944 23 C -0.098 4.098 24 H 0.274 0.726 25 H 0.393 0.607 26 H 0.063 0.937 27 H 0.019 0.981 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.700 -16.350 0.729 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.169 1.169 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.612 4.612 8 H 0.105 0.895 9 C 0.341 3.659 10 O -0.519 6.519 11 N -0.406 5.406 12 C 0.051 3.949 13 H 0.046 0.954 14 C -0.158 4.158 15 C -0.137 4.137 16 C -0.108 4.108 17 H 0.100 0.900 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.150 4.150 21 C -0.113 4.113 22 H 0.075 0.925 23 C -0.136 4.136 24 H 0.084 0.916 25 H 0.227 0.773 26 H 0.082 0.918 27 H 0.038 0.962 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.660 -16.276 0.715 17.247 hybrid contribution 0.172 1.194 -0.026 1.207 sum 5.832 -15.081 0.689 16.184 Atomic orbital electron populations 1.70205 1.09593 1.28807 1.36761 1.26993 0.95512 1.05013 0.91174 0.84960 0.79349 0.75344 0.78531 1.16939 1.19320 1.19339 1.21494 0.94716 0.90245 1.54772 0.89522 1.18620 0.86872 0.84483 0.75884 1.90544 1.16251 1.87991 1.57157 1.45935 1.09110 1.04771 1.80814 1.20684 0.94681 0.84117 0.95382 0.95367 1.21841 0.99877 0.96965 0.97089 1.21325 0.97975 0.92951 1.01404 1.21895 0.98981 0.94422 0.95484 0.89992 1.22195 0.99393 0.94090 0.99529 1.22481 0.99426 0.97116 0.96541 1.21911 1.00437 0.93318 0.99308 1.21621 0.99013 0.93772 0.96846 0.92546 1.21520 0.98278 0.93224 1.00564 0.91648 0.77327 0.91807 0.96213 0.90822 0.92950 0.90496 0.91863 0.91174 0.90685 0.91558 0.90925 0.90006 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.77 11.83 21.84 0.26 -51.51 16 2 C 0.03 1.58 5.50 85.30 0.47 2.05 16 3 Si 1.00 41.79 29.56 68.60 2.03 43.82 16 4 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 7 C -0.58 -33.52 9.54 24.83 0.24 -33.29 16 8 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 9 C 0.54 32.24 7.68 86.36 0.66 32.90 16 10 O -0.63 -43.78 14.64 -4.32 -0.06 -43.84 16 11 N -0.75 -35.13 5.06 -446.28 -2.26 -37.39 16 12 C 0.16 6.32 2.42 45.10 0.11 6.43 16 13 H 0.03 1.36 7.58 -2.38 -0.02 1.34 16 14 C -0.12 -4.47 5.36 30.70 0.16 -4.30 16 15 C -0.10 -2.83 5.66 30.44 0.17 -2.66 16 16 C -0.09 -2.05 2.37 -10.33 -0.02 -2.07 16 17 H 0.08 1.80 8.05 -2.38 -0.02 1.78 16 18 C -0.11 -2.06 6.45 31.48 0.20 -1.86 16 19 C -0.12 -1.85 6.87 32.04 0.22 -1.63 16 20 C -0.11 -2.08 6.50 31.08 0.20 -1.88 16 21 C -0.09 -2.29 2.24 -10.63 -0.02 -2.32 16 22 H 0.06 1.57 7.97 -2.39 -0.02 1.55 16 23 C -0.10 -2.85 5.10 30.40 0.16 -2.69 16 24 H 0.27 15.51 8.29 -92.71 -0.77 14.74 16 25 H 0.39 15.78 8.57 -92.70 -0.79 14.98 16 26 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.02 0.90 8.09 -2.38 -0.02 0.88 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.60 8.02 -2.39 -0.02 1.58 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.07 1.24 8.07 -2.39 -0.02 1.22 16 36 H 0.08 2.08 8.07 -2.39 -0.02 2.06 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -76.01 293.81 2.76 -73.25 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.25 Total: 26.98 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 2.55 Total: -11.32 kcal Atomic # 7 Polarization: -86.90 SS G_CDS: -2.00 Total: -88.90 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -0.06 Total: -43.84 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -76.01 2.76 -73.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356833909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.574 kcal (2) G-P(sol) polarization free energy of solvation -76.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds