Wall clock time and date at job start Mon Mar 30 2020 17:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48501 * 109.47145 * 274.98107 * 3 2 1 5 5 H 1.48500 * 109.47433 * 34.97902 * 3 2 1 6 6 H 1.48498 * 109.47366 * 154.98194 * 3 2 1 7 7 C 1.40051 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99667 * 186.22776 * 7 2 1 9 9 C 1.46368 * 120.00452 * 6.23038 * 7 2 1 10 10 O 1.21692 * 119.99589 * 355.06637 * 9 7 2 11 11 N 1.34770 * 120.00451 * 175.06781 * 9 7 2 12 12 C 1.46498 * 120.00167 * 0.02562 * 11 9 7 13 13 C 1.53000 * 109.47306 * 269.99943 * 12 11 9 14 14 C 1.52994 * 117.49864 * 243.74746 * 13 12 11 15 15 C 1.52998 * 117.50325 * 175.08329 * 13 12 11 16 16 C 1.46505 * 119.99985 * 179.97438 * 11 9 7 17 17 C 1.53006 * 109.47166 * 270.00064 * 16 11 9 18 18 C 1.53776 * 113.61143 * 185.00095 * 17 16 11 19 19 C 1.53778 * 87.17133 * 220.05945 * 18 17 16 20 20 C 1.53780 * 87.08347 * 25.39264 * 19 18 17 21 21 H 0.97000 * 119.99859 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47115 * 29.99598 * 12 11 9 23 23 H 1.08998 * 109.47504 * 149.99824 * 12 11 9 24 24 H 1.09002 * 115.54501 * 29.41265 * 13 12 11 25 25 H 1.08998 * 117.49763 * 359.97438 * 14 13 12 26 26 H 1.09005 * 117.49763 * 145.02002 * 14 13 12 27 27 H 1.09000 * 117.49952 * 214.98077 * 15 13 12 28 28 H 1.09003 * 117.49501 * 359.97438 * 15 13 12 29 29 H 1.08997 * 109.46966 * 150.00664 * 16 11 9 30 30 H 1.08990 * 109.47075 * 30.00139 * 16 11 9 31 31 H 1.08999 * 112.90698 * 316.25391 * 17 16 11 32 32 H 1.09007 * 113.61481 * 105.47622 * 18 17 16 33 33 H 1.09000 * 113.62085 * 334.64942 * 18 17 16 34 34 H 1.09001 * 113.61392 * 139.93919 * 19 18 17 35 35 H 1.09004 * 113.62053 * 270.84438 * 19 18 17 36 36 H 1.09001 * 113.61244 * 89.11002 * 20 19 18 37 37 H 1.08996 * 113.61531 * 219.93609 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3830 2.1071 -1.3948 5 1 1.4949 2.6200 0.8026 6 1 3.5870 1.4120 0.5921 7 6 2.0069 -1.2129 0.0005 8 1 3.0821 -1.2156 0.1020 9 6 1.2815 -2.4768 -0.1365 10 8 0.0649 -2.4806 -0.1605 11 7 1.9610 -3.6364 -0.2359 12 6 3.4257 -3.6321 -0.2064 13 6 3.9642 -3.4907 -1.6315 14 6 4.7807 -4.6545 -2.1968 15 6 5.4778 -3.3496 -1.8041 16 6 1.2349 -4.9015 -0.3725 17 6 0.9547 -5.4812 1.0155 18 6 0.3016 -6.8729 0.9814 19 6 -0.5777 -6.4051 2.1531 20 6 -0.3540 -4.9708 1.6457 21 1 -0.4850 0.8401 -0.0004 22 1 3.7744 -2.7949 0.3984 23 1 3.7833 -4.5665 0.2261 24 1 3.3254 -2.9413 -2.3230 25 1 4.9346 -5.5207 -1.5533 26 1 4.6794 -4.8705 -3.2604 27 1 5.8349 -2.7076 -2.6094 28 1 6.0900 -3.3570 -0.9022 29 1 1.8375 -5.6062 -0.9455 30 1 0.2919 -4.7252 -0.8897 31 1 1.8142 -5.4184 1.6830 32 1 0.9836 -7.6819 1.2433 33 1 -0.2582 -7.0704 0.0672 34 1 -1.6135 -6.7370 2.0814 35 1 -0.1380 -6.5954 3.1323 36 1 -1.0927 -4.6469 0.9125 37 1 -0.2026 -4.2440 2.4437 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358423647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:34 Heat of formation + Delta-G solvation = -16.731130 kcal Electronic energy + Delta-G solvation = -17379.131817 eV Core-core repulsion = 14735.922432 eV Total energy + Delta-G solvation = -2643.209385 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.40253 -38.91758 -37.93564 -35.17811 -34.45249 -30.25928 -28.02999 -26.95711 -26.29861 -23.90672 -23.11135 -21.81973 -20.79979 -20.13936 -18.45369 -17.61230 -16.88339 -16.20607 -16.10491 -15.90434 -15.52320 -14.97960 -14.43291 -14.03090 -13.68904 -13.36821 -13.24842 -13.12797 -12.89857 -12.69085 -12.44352 -12.35028 -12.22989 -12.15527 -11.98565 -11.50980 -11.22860 -11.16644 -10.98148 -10.89094 -10.64872 -9.65375 -8.94925 -8.24267 -6.75515 1.37982 1.38763 1.53804 2.24591 2.52300 2.83198 3.10800 3.65514 3.78631 3.89386 3.92055 4.01750 4.10459 4.15393 4.23197 4.49687 4.58949 4.62597 4.80815 4.85281 4.88067 4.90741 4.95454 5.00310 5.07514 5.11791 5.16047 5.21641 5.35345 5.38662 5.45001 5.46103 5.67038 5.88895 6.22613 6.54531 6.94238 7.52929 8.56294 8.75568 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.017199 B = 0.009740 C = 0.006589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.642190 B = 2874.173127 C = 4248.745559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.030 3.970 3 Si 0.986 3.014 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.248 1.248 7 C -0.565 4.565 8 H 0.086 0.914 9 C 0.544 3.456 10 O -0.621 6.621 11 N -0.639 5.639 12 C 0.162 3.838 13 C -0.182 4.182 14 C -0.166 4.166 15 C -0.168 4.168 16 C 0.138 3.862 17 C -0.121 4.121 18 C -0.115 4.115 19 C -0.130 4.130 20 C -0.133 4.133 21 H 0.270 0.730 22 H 0.065 0.935 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.108 0.892 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.222 -10.444 0.173 13.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.184 4.184 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.171 1.171 7 C -0.601 4.601 8 H 0.104 0.896 9 C 0.349 3.651 10 O -0.508 6.508 11 N -0.373 5.373 12 C 0.038 3.962 13 C -0.202 4.202 14 C -0.202 4.202 15 C -0.205 4.205 16 C 0.015 3.985 17 C -0.141 4.141 18 C -0.153 4.153 19 C -0.168 4.168 20 C -0.171 4.171 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.126 0.874 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 8.398 -10.374 0.165 13.348 hybrid contribution -0.203 1.255 -0.156 1.281 sum 8.195 -9.119 0.009 12.260 Atomic orbital electron populations 1.70202 1.09354 1.28444 1.37214 1.26884 0.95383 1.04636 0.91522 0.85175 0.79202 0.76004 0.79003 1.19097 1.19958 1.17092 1.21474 0.95042 0.90262 1.53363 0.89560 1.18507 0.86562 0.84011 0.75980 1.90542 1.15961 1.87163 1.57113 1.47856 1.05986 1.05725 1.77776 1.20856 0.79855 1.01508 0.93980 1.22688 0.94477 1.04271 0.98739 1.23095 1.03153 0.92296 1.01691 1.22989 0.93406 1.00404 1.03752 1.21122 0.96077 0.85444 0.95873 1.22967 0.96895 0.97046 0.97174 1.22790 0.98594 0.95285 0.98604 1.22823 1.00625 0.94392 0.98930 1.22781 0.98435 0.96708 0.99175 0.91980 0.91640 0.90006 0.91224 0.87368 0.88750 0.88640 0.87525 0.89906 0.94564 0.89688 0.89094 0.90048 0.90935 0.89167 0.93094 0.95421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.20 11.85 21.84 0.26 -50.94 16 2 C 0.03 1.72 5.49 85.31 0.47 2.19 16 3 Si 0.99 42.05 29.56 68.60 2.03 44.07 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 6 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 7 C -0.56 -32.27 8.76 24.83 0.22 -32.05 16 8 H 0.09 4.50 5.95 -2.91 -0.02 4.48 16 9 C 0.54 31.66 7.61 86.36 0.66 32.32 16 10 O -0.62 -41.41 13.90 -4.32 -0.06 -41.47 16 11 N -0.64 -29.06 2.47 -826.92 -2.04 -31.11 16 12 C 0.16 5.87 5.43 86.38 0.47 6.34 16 13 C -0.18 -6.00 6.01 -10.80 -0.06 -6.06 16 14 C -0.17 -3.99 10.18 30.62 0.31 -3.68 16 15 C -0.17 -4.22 10.26 30.62 0.31 -3.91 16 16 C 0.14 5.45 5.25 86.38 0.45 5.90 16 17 C -0.12 -4.18 3.97 -10.21 -0.04 -4.22 16 18 C -0.11 -2.97 7.64 31.12 0.24 -2.73 16 19 C -0.13 -3.63 8.08 31.12 0.25 -3.38 16 20 C -0.13 -5.28 7.07 31.18 0.22 -5.06 16 21 H 0.27 15.37 8.29 -92.71 -0.77 14.60 16 22 H 0.07 2.57 6.04 -2.39 -0.01 2.55 16 23 H 0.08 2.42 7.80 -2.39 -0.02 2.40 16 24 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 25 H 0.11 2.21 8.03 -2.39 -0.02 2.19 16 26 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 27 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 30 H 0.04 1.67 7.12 -2.39 -0.02 1.65 16 31 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.08 2.06 8.10 -2.39 -0.02 2.04 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.05 2.35 7.75 -2.39 -0.02 2.33 16 37 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -74.19 305.31 4.71 -69.48 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 1.03 Total: 24.30 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 3.50 Total: -14.32 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -1.79 Total: -82.05 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -0.06 Total: -41.47 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -74.19 4.71 -69.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358423647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.744 kcal (2) G-P(sol) polarization free energy of solvation -74.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds