Wall clock time and date at job start Mon Mar 30 2020 17:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50699 * 120.00735 * 2 1 4 4 C 1.53070 * 109.44585 * 119.79408 * 3 2 1 5 5 C 1.53195 * 109.29524 * 181.23845 * 4 3 2 6 6 N 1.46919 * 108.89273 * 305.57804 * 5 4 3 7 7 C 1.34783 * 120.63144 * 233.55709 * 6 5 4 8 8 O 1.21274 * 119.99655 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99922 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.47009 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47500 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99447 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00503 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00492 * 179.97438 * 13 11 10 15 15 Si 1.86810 * 119.99599 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47084 * 90.00135 * 15 13 11 17 17 H 1.48502 * 109.46825 * 209.99931 * 15 13 11 18 18 H 1.48492 * 109.47028 * 329.99880 * 15 13 11 19 19 C 1.46928 * 118.73982 * 53.53793 * 6 5 4 20 20 C 1.53039 * 109.46083 * 240.00114 * 3 2 1 21 21 H 1.08004 * 119.99338 * 0.02562 * 1 2 3 22 22 H 1.07995 * 120.00589 * 180.02562 * 1 2 3 23 23 H 1.08002 * 119.99777 * 179.97438 * 2 1 3 24 24 H 1.09007 * 109.45494 * 359.96667 * 3 2 1 25 25 H 1.08997 * 109.38860 * 61.36032 * 4 3 2 26 26 H 1.09003 * 109.62046 * 301.25375 * 4 3 2 27 27 H 1.09002 * 109.58720 * 185.71834 * 5 4 3 28 28 H 1.08996 * 109.58651 * 65.43731 * 5 4 3 29 29 H 1.09001 * 109.47385 * 300.00399 * 9 7 6 30 30 H 1.08997 * 109.47457 * 60.00250 * 9 7 6 31 31 H 1.09001 * 109.46917 * 300.00128 * 10 9 7 32 32 H 1.08997 * 109.47262 * 59.99573 * 10 9 7 33 33 H 0.96996 * 120.00063 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.58787 * 66.18123 * 19 6 5 35 35 H 1.09007 * 109.58600 * 186.46436 * 19 6 5 36 36 H 1.09002 * 109.49876 * 58.67167 * 20 3 2 37 37 H 1.09005 * 109.52615 * 298.59417 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9395 1.3876 1.2526 5 6 3.6803 2.7285 1.2647 6 7 4.4144 2.8779 0.0009 7 6 5.7351 3.1469 0.0014 8 8 6.3288 3.2676 1.0520 9 6 6.4741 3.2967 -1.3033 10 6 7.9480 3.5965 -1.0231 11 6 8.6870 3.7470 -2.3279 12 1 8.1583 3.6391 -3.2634 13 6 10.0380 4.0223 -2.3273 14 7 10.6830 4.1531 -3.4659 15 14 10.9523 4.2096 -0.7090 16 1 11.4742 2.8874 -0.2794 17 1 12.0840 5.1546 -0.8865 18 1 10.0255 4.7358 0.3250 19 6 3.6816 2.7280 -1.2638 20 6 2.9434 1.3857 -1.2497 21 1 -0.5399 0.9354 -0.0004 22 1 -0.5401 -0.9352 0.0004 23 1 1.8499 -0.9353 0.0004 24 1 1.3551 2.1334 -0.0006 25 1 3.6629 0.5723 1.2427 26 1 2.3145 1.3093 2.1421 27 1 4.3812 2.7512 2.0993 28 1 2.9622 3.5418 1.3685 29 1 6.3940 2.3718 -1.8746 30 1 6.0388 4.1159 -1.8755 31 1 8.0284 4.5213 -0.4517 32 1 8.3831 2.7771 -0.4511 33 1 11.6333 4.3472 -3.4654 34 1 2.9618 3.5398 -1.3674 35 1 4.3830 2.7528 -2.0978 36 1 2.3194 1.3043 -2.1397 37 1 3.6684 0.5718 -1.2380 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360182567.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:44 Heat of formation + Delta-G solvation = -35.871281 kcal Electronic energy + Delta-G solvation = -16769.571597 eV Core-core repulsion = 14125.532233 eV Total energy + Delta-G solvation = -2644.039364 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.98385 -37.73613 -34.64300 -33.54375 -31.80536 -30.96048 -30.73416 -26.50925 -24.89064 -23.27858 -21.61675 -20.43915 -20.00309 -18.60212 -17.26672 -16.26256 -15.45287 -15.36319 -15.02121 -14.58059 -14.15684 -14.04534 -13.83622 -13.12760 -12.86077 -12.55819 -12.43667 -12.35252 -12.09690 -11.43952 -11.34577 -11.00617 -11.00524 -10.93502 -10.57166 -10.11793 -10.01376 -9.76527 -9.55067 -9.20529 -9.10699 -8.51030 -8.45343 -6.01801 -4.00403 2.03021 3.11224 3.24371 3.39146 3.45614 3.57025 4.45841 4.52356 4.55747 4.74138 4.97712 5.00870 5.13655 5.20957 5.25924 5.33824 5.44178 5.50065 5.57340 5.72546 5.75773 5.77987 5.92755 5.96264 6.08014 6.10193 6.15407 6.37781 6.53590 6.65598 6.76480 7.38447 7.45402 7.66829 7.81142 8.50895 8.65169 9.01123 9.61477 11.11037 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.048408 B = 0.004833 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.281313 B = 5791.715152 C = 6144.953185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 C -0.062 4.062 4 C -0.124 4.124 5 C 0.110 3.890 6 N -0.623 5.623 7 C 0.513 3.487 8 O -0.542 6.542 9 C -0.121 4.121 10 C 0.001 3.999 11 C -0.524 4.524 12 H 0.072 0.928 13 C 0.069 3.931 14 N -0.904 5.904 15 Si 0.877 3.123 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.261 1.261 19 C 0.107 3.893 20 C -0.127 4.127 21 H 0.095 0.905 22 H 0.095 0.905 23 H 0.108 0.892 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.023 0.977 32 H 0.018 0.982 33 H 0.263 0.737 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.579 -6.305 6.155 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.161 4.161 3 C -0.080 4.080 4 C -0.163 4.163 5 C -0.013 4.013 6 N -0.359 5.359 7 C 0.303 3.697 8 O -0.418 6.418 9 C -0.161 4.161 10 C -0.037 4.037 11 C -0.562 4.562 12 H 0.090 0.910 13 C -0.132 4.132 14 N -0.543 5.543 15 Si 0.704 3.296 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.185 1.185 19 C -0.016 4.016 20 C -0.165 4.165 21 H 0.113 0.887 22 H 0.114 0.886 23 H 0.126 0.874 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.057 -6.187 6.648 22.017 hybrid contribution 0.411 -0.024 0.662 0.779 sum -19.646 -6.211 7.309 21.863 Atomic orbital electron populations 1.23828 0.95908 1.01705 1.01929 1.22975 0.95852 0.98307 0.98980 1.20373 0.96732 0.95520 0.95412 1.21923 0.98624 0.98276 0.97430 1.21482 0.95678 0.96168 0.87959 1.48261 1.08743 1.72360 1.06520 1.21549 0.80708 0.74482 0.92933 1.90632 1.66796 1.50083 1.34280 1.21683 0.98748 1.02888 0.92745 1.19378 0.89441 0.97320 0.97528 1.21113 0.93885 1.48892 0.92318 0.90951 1.24966 0.97570 0.94471 0.96217 1.69908 1.09453 1.49421 1.25510 0.86800 0.79534 0.78387 0.84868 1.20247 1.21443 1.18527 1.21727 0.96309 0.96738 0.86812 1.21937 0.98796 0.98202 0.97566 0.88673 0.88643 0.87443 0.90743 0.91347 0.90952 0.89057 0.92112 0.89685 0.89659 0.95846 0.96314 0.92732 0.91646 0.88715 0.90628 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.45 14.32 29.02 0.42 -1.03 16 2 C -0.14 -1.18 8.77 -36.02 -0.32 -1.49 16 3 C -0.06 -0.55 2.43 -91.72 -0.22 -0.77 16 4 C -0.12 -1.24 5.35 -26.59 -0.14 -1.38 16 5 C 0.11 1.36 6.43 -3.71 -0.02 1.34 16 6 N -0.62 -8.96 2.97 -172.77 -0.51 -9.47 16 7 C 0.51 9.73 7.70 -10.98 -0.08 9.64 16 8 O -0.54 -12.33 15.39 5.56 0.09 -12.25 16 9 C -0.12 -2.40 3.98 -27.88 -0.11 -2.51 16 10 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 11 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 12 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 13 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 14 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 15 Si 0.88 22.79 27.47 -169.99 -4.67 18.12 16 16 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 18 H -0.26 -6.77 6.54 56.52 0.37 -6.40 16 19 C 0.11 1.19 6.34 -3.71 -0.02 1.16 16 20 C -0.13 -1.19 5.35 -26.61 -0.14 -1.33 16 21 H 0.09 0.65 7.83 -52.48 -0.41 0.24 16 22 H 0.10 0.61 8.06 -52.49 -0.42 0.19 16 23 H 0.11 0.87 8.06 -52.49 -0.42 0.44 16 24 H 0.07 0.63 7.78 -51.93 -0.40 0.22 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 1.31 7.00 -51.93 -0.36 0.94 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.56 7.69 -51.93 -0.40 1.16 16 30 H 0.09 1.56 7.94 -51.93 -0.41 1.15 16 31 H 0.02 0.62 7.15 -51.93 -0.37 0.25 16 32 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 33 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.07 5.93 -51.92 -0.31 0.76 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 299.83 15.07 4.52 4.52 Total: -1.00 -33.36 299.83 -7.01 -40.37 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -6.03 Total: -3.98 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -1.17 Total: -9.92 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.26 Total: -36.85 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.67 Total: 18.12 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.36 -7.01 -40.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360182567.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.495 kcal (2) G-P(sol) polarization free energy of solvation -33.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds