Wall clock time and date at job start Mon Mar 30 2020 17:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86795 * 119.99909 * 2 1 4 4 H 1.48500 * 109.47206 * 270.00070 * 3 2 1 5 5 H 1.48499 * 109.47362 * 30.00248 * 3 2 1 6 6 H 1.48500 * 109.47365 * 150.00113 * 3 2 1 7 7 C 1.38949 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00220 * 197.99290 * 7 2 1 9 9 N 1.37104 * 120.00131 * 17.98126 * 7 2 1 10 10 C 1.34777 * 119.99718 * 44.49239 * 9 7 2 11 11 O 1.21296 * 119.99834 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99922 * 180.02562 * 10 9 7 13 13 C 1.52999 * 109.46891 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47136 * 179.97438 * 13 12 10 15 15 C 1.53784 * 113.61194 * 85.86300 * 14 13 12 16 16 C 1.54046 * 86.98412 * 140.02094 * 15 14 13 17 17 C 1.53776 * 113.61321 * 183.46679 * 14 13 12 18 18 C 1.46496 * 120.00114 * 224.49096 * 9 7 2 19 19 C 1.53003 * 117.50044 * 3.27553 * 18 9 7 20 20 C 1.52993 * 117.50133 * 294.61148 * 18 9 7 21 21 H 0.96994 * 120.00080 * 354.95947 * 1 2 3 22 22 H 1.08998 * 109.47089 * 60.00061 * 12 10 9 23 23 H 1.08998 * 109.46661 * 299.99535 * 12 10 9 24 24 H 1.08999 * 109.47578 * 59.99702 * 13 12 10 25 25 H 1.09007 * 109.47002 * 299.99905 * 13 12 10 26 26 H 1.08994 * 112.84621 * 314.66881 * 14 13 12 27 27 H 1.08997 * 113.60877 * 254.61648 * 15 14 13 28 28 H 1.08997 * 113.61601 * 25.51444 * 15 14 13 29 29 H 1.08997 * 113.62185 * 220.01862 * 16 15 14 30 30 H 1.08997 * 113.61391 * 89.11273 * 16 15 14 31 31 H 1.09003 * 113.62119 * 334.48937 * 17 14 13 32 32 H 1.09002 * 113.61309 * 105.30584 * 17 14 13 33 33 H 1.09003 * 115.54582 * 148.93926 * 18 9 7 34 34 H 1.09001 * 117.49531 * 359.97438 * 19 18 9 35 35 H 1.09000 * 117.49874 * 145.02169 * 19 18 9 36 36 H 1.08999 * 117.50158 * 214.97945 * 20 18 9 37 37 H 1.09002 * 117.49858 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0493 -1.2263 0.2884 9 7 1.3737 -2.3615 -0.3676 10 6 0.5767 -2.3777 -1.4543 11 8 0.4210 -1.3674 -2.1073 12 6 -0.1220 -3.6506 -1.8575 13 6 -0.9568 -3.3980 -3.1145 14 6 -1.6657 -4.6905 -3.5243 15 6 -3.0094 -4.9094 -2.8092 16 6 -3.5493 -5.4265 -4.1561 17 6 -2.4679 -4.5657 -4.8303 18 6 1.5613 -3.5816 0.4214 19 6 2.4161 -3.4804 1.6863 20 6 2.9617 -4.1970 0.4485 21 1 -0.4850 0.8367 0.0738 22 1 -0.7738 -3.9794 -1.0481 23 1 0.6195 -4.4225 -2.0633 24 1 -0.3048 -3.0694 -3.9238 25 1 -1.6983 -2.6258 -2.9092 26 1 -1.0094 -5.5603 -3.4963 27 1 -2.9707 -5.6716 -2.0310 28 1 -3.4818 -3.9857 -2.4751 29 1 -4.5661 -5.0995 -4.3736 30 1 -3.4079 -6.4975 -4.3009 31 1 -2.7925 -3.5481 -5.0479 32 1 -1.9917 -5.0495 -5.6831 33 1 0.7113 -4.2636 0.4416 34 1 2.8392 -2.5062 1.9312 35 1 2.1288 -4.0963 2.5385 36 1 3.0332 -5.2840 0.4870 37 1 3.7435 -3.6944 -0.1210 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362905650.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:52 Heat of formation + Delta-G solvation = -11.361360 kcal Electronic energy + Delta-G solvation = -17200.894957 eV Core-core repulsion = 14557.918423 eV Total energy + Delta-G solvation = -2642.976534 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.52069 -39.55803 -37.74046 -34.88641 -33.44876 -32.61026 -28.10696 -26.46972 -26.00882 -23.29545 -22.94123 -22.57270 -20.75909 -20.23994 -18.20417 -17.77339 -16.76694 -16.54764 -16.00034 -15.88956 -15.53940 -15.12276 -14.37671 -14.27917 -13.87992 -13.40801 -13.27720 -13.07639 -12.87050 -12.79052 -12.54755 -12.21795 -12.13370 -12.04725 -11.80987 -11.63004 -11.35861 -11.20662 -10.98354 -10.91999 -10.69799 -9.89683 -8.94806 -8.19493 -5.97952 1.33738 1.42404 1.47115 2.26584 2.44630 3.10569 3.15422 3.38524 3.75430 3.83908 3.87485 4.03621 4.14940 4.17137 4.30082 4.38345 4.44738 4.58991 4.74058 4.81779 4.90547 4.91637 4.94014 4.94949 5.09013 5.09798 5.14627 5.24287 5.34268 5.41073 5.46900 5.48881 5.50741 5.73009 6.21674 7.05868 7.24294 7.73958 8.41291 8.89448 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.024965 B = 0.007144 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.306593 B = 3918.527483 C = 4712.037358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.019 3.981 3 Si 0.969 3.031 4 H -0.292 1.292 5 H -0.280 1.280 6 H -0.253 1.253 7 C -0.356 4.356 8 H 0.075 0.925 9 N -0.449 5.449 10 C 0.463 3.537 11 O -0.593 6.593 12 C -0.114 4.114 13 C -0.080 4.080 14 C -0.107 4.107 15 C -0.142 4.142 16 C -0.130 4.130 17 C -0.141 4.141 18 C 0.045 3.955 19 C -0.173 4.173 20 C -0.179 4.179 21 H 0.258 0.742 22 H 0.084 0.916 23 H 0.099 0.901 24 H 0.044 0.956 25 H 0.034 0.966 26 H 0.106 0.894 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.078 0.922 35 H 0.118 0.882 36 H 0.127 0.873 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.273 -13.504 -2.473 13.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.186 4.186 3 Si 0.795 3.205 4 H -0.219 1.219 5 H -0.206 1.206 6 H -0.177 1.177 7 C -0.484 4.484 8 H 0.093 0.907 9 N -0.170 5.170 10 C 0.253 3.747 11 O -0.475 6.475 12 C -0.154 4.154 13 C -0.118 4.118 14 C -0.126 4.126 15 C -0.179 4.179 16 C -0.167 4.167 17 C -0.178 4.178 18 C -0.060 4.060 19 C -0.210 4.210 20 C -0.218 4.218 21 H 0.067 0.933 22 H 0.103 0.897 23 H 0.117 0.883 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.124 0.876 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.144 0.856 34 H 0.097 0.903 35 H 0.136 0.864 36 H 0.145 0.855 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.513 -12.865 -2.846 13.413 hybrid contribution 0.321 1.508 0.151 1.549 sum -2.192 -11.357 -2.695 11.876 Atomic orbital electron populations 1.69940 1.08001 1.27441 1.45556 1.26074 0.95554 1.02647 0.94373 0.85325 0.79092 0.78642 0.77475 1.21908 1.20554 1.17682 1.19092 0.94527 0.85385 1.49387 0.90728 1.43093 1.43989 1.07828 1.22094 1.21037 0.82464 0.90503 0.80702 1.90465 1.64495 1.37536 1.54979 1.21494 0.99411 0.95313 0.99209 1.21144 0.97769 0.97071 0.95818 1.22622 0.95801 0.97020 0.97127 1.23029 0.96280 1.01022 0.97610 1.22825 0.98315 1.00265 0.95294 1.22942 0.97802 1.00180 0.96920 1.22016 0.95033 0.90615 0.98328 1.23122 1.03790 1.02031 0.92106 1.23331 0.96814 1.00491 1.01171 0.93307 0.89729 0.88273 0.93672 0.94719 0.87617 0.90488 0.91909 0.91218 0.88492 0.91581 0.90480 0.85610 0.90313 0.86412 0.85540 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.79 11.74 21.66 0.25 -54.54 16 2 C 0.02 1.13 4.39 84.93 0.37 1.50 16 3 Si 0.97 47.09 29.59 68.60 2.03 49.12 16 4 H -0.29 -14.75 7.11 99.48 0.71 -14.05 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.25 -11.25 7.11 99.48 0.71 -10.55 16 7 C -0.36 -20.24 7.91 84.04 0.66 -19.58 16 8 H 0.08 4.11 7.27 -2.91 -0.02 4.09 16 9 N -0.45 -23.14 2.83 -613.13 -1.74 -24.88 16 10 C 0.46 24.41 6.96 87.66 0.61 25.02 16 11 O -0.59 -37.19 13.75 -3.08 -0.04 -37.23 16 12 C -0.11 -4.37 4.32 29.85 0.13 -4.25 16 13 C -0.08 -2.91 4.33 30.60 0.13 -2.78 16 14 C -0.11 -2.80 3.64 -10.27 -0.04 -2.83 16 15 C -0.14 -3.39 7.65 31.21 0.24 -3.15 16 16 C -0.13 -2.53 8.09 31.21 0.25 -2.27 16 17 C -0.14 -3.26 7.64 31.12 0.24 -3.03 16 18 C 0.05 1.75 5.87 44.99 0.26 2.02 16 19 C -0.17 -5.98 9.80 30.62 0.30 -5.68 16 20 C -0.18 -5.69 10.36 30.62 0.32 -5.37 16 21 H 0.26 15.59 8.32 -92.71 -0.77 14.82 16 22 H 0.08 3.01 7.57 -2.39 -0.02 2.99 16 23 H 0.10 3.20 8.11 -2.39 -0.02 3.18 16 24 H 0.04 1.77 8.10 -2.39 -0.02 1.76 16 25 H 0.03 1.46 7.83 -2.38 -0.02 1.44 16 26 H 0.11 2.35 8.14 -2.39 -0.02 2.34 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.73 7.92 -2.39 -0.02 1.71 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.71 8.10 -2.39 -0.02 1.69 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.13 4.22 6.96 -2.39 -0.02 4.21 16 34 H 0.08 3.18 6.73 -2.39 -0.02 3.16 16 35 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -73.98 302.23 5.02 -68.96 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 1.03 Total: 18.97 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 3.48 Total: -20.40 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -1.48 Total: -79.42 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -0.04 Total: -37.23 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -73.98 5.02 -68.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362905650.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.601 kcal (2) G-P(sol) polarization free energy of solvation -73.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds