Wall clock time and date at job start Mon Mar 30 2020 17:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 115.54723 * 2 1 4 4 O 1.21277 * 119.99929 * 112.22967 * 3 2 1 5 5 N 1.34786 * 119.99916 * 292.22418 * 3 2 1 6 6 C 1.46922 * 120.62717 * 4.49425 * 5 3 2 7 7 C 1.52761 * 109.00834 * 233.57783 * 6 5 3 8 8 C 1.53039 * 109.38607 * 305.59582 * 7 6 5 9 9 C 1.53041 * 109.53715 * 61.23743 * 8 7 6 10 10 H 1.08997 * 109.49854 * 58.58485 * 9 8 7 11 11 C 1.50701 * 109.49582 * 178.68475 * 9 8 7 12 12 H 1.08003 * 119.99682 * 119.83571 * 11 9 8 13 13 C 1.37879 * 120.00080 * 299.83705 * 11 9 8 14 14 N 1.31518 * 119.99863 * 359.97438 * 13 11 9 15 15 Si 1.86794 * 119.99964 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47121 * 90.00065 * 15 13 11 17 17 H 1.48505 * 109.46884 * 209.99694 * 15 13 11 18 18 H 1.48494 * 109.47235 * 329.99726 * 15 13 11 19 19 C 1.46918 * 120.62993 * 184.77448 * 5 3 2 20 20 C 1.53002 * 117.50045 * 214.29664 * 2 1 3 21 21 C 1.52996 * 117.50115 * 145.66969 * 2 1 3 22 22 H 1.08993 * 109.47213 * 272.77711 * 1 2 3 23 23 H 1.09003 * 109.47338 * 152.77981 * 1 2 3 24 24 H 1.09001 * 109.47308 * 32.77974 * 1 2 3 25 25 H 1.08999 * 109.59197 * 353.42168 * 6 5 3 26 26 H 1.09003 * 109.58871 * 113.84542 * 6 5 3 27 27 H 1.08997 * 109.56841 * 185.55378 * 7 6 5 28 28 H 1.09001 * 109.38238 * 65.52066 * 7 6 5 29 29 H 1.09001 * 109.45878 * 301.21525 * 8 7 6 30 30 H 1.08998 * 109.45999 * 181.25939 * 8 7 6 31 31 H 0.96994 * 119.99974 * 180.02562 * 14 13 11 32 32 H 1.09002 * 109.58742 * 246.15593 * 19 5 3 33 33 H 1.09004 * 109.58891 * 6.57985 * 19 5 3 34 34 H 1.08996 * 117.49560 * 359.97438 * 20 2 1 35 35 H 1.09000 * 117.50116 * 145.01722 * 20 2 1 36 36 H 1.09000 * 117.49828 * 214.97470 * 21 2 1 37 37 H 1.08996 * 117.50016 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 2.7999 1.7354 0.9722 5 7 2.0722 2.1581 -1.0806 6 6 1.2439 1.7590 -2.2265 7 6 2.0881 1.8259 -3.4979 8 6 2.7068 3.2199 -3.6242 9 6 3.6172 3.4865 -2.4232 10 1 4.3953 2.7245 -2.3803 11 6 4.2510 4.8463 -2.5647 12 1 4.0789 5.6031 -1.8136 13 6 5.0506 5.1244 -3.6530 14 7 5.2605 4.2027 -4.5674 15 14 5.8369 6.8098 -3.8279 16 1 7.1660 6.8071 -3.1656 17 1 6.0022 7.1318 -5.2682 18 1 4.9676 7.8303 -3.1891 19 6 2.7857 3.4411 -1.1374 20 6 2.2365 -1.1212 -0.7647 21 6 2.2365 -1.1207 0.7653 22 1 -0.3633 0.0498 1.0264 23 1 -0.3634 -0.9139 -0.4701 24 1 -0.3634 0.8640 -0.5564 25 1 0.8850 0.7402 -2.0809 26 1 0.3958 2.4377 -2.3184 27 1 1.4583 1.6274 -4.3651 28 1 2.8807 1.0794 -3.4455 29 1 1.9143 3.9677 -3.6523 30 1 3.2913 3.2759 -4.5425 31 1 5.8233 4.3982 -5.3328 32 1 2.0660 4.2598 -1.1386 33 1 3.4439 3.5318 -0.2733 34 1 1.6112 -1.8590 -1.2674 35 1 3.1715 -0.8755 -1.2681 36 1 3.1716 -0.8747 1.2685 37 1 1.6113 -1.8578 1.2692 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397617033.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:06 Heat of formation + Delta-G solvation = -23.758348 kcal Electronic energy + Delta-G solvation = -17613.418458 eV Core-core repulsion = 14969.904350 eV Total energy + Delta-G solvation = -2643.514108 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.04483 -37.25880 -36.20624 -33.43307 -31.31042 -30.29736 -28.63984 -25.26645 -24.97593 -22.42162 -22.11969 -21.63713 -19.33674 -18.02073 -16.66670 -16.10283 -15.53392 -15.02861 -14.70436 -14.04452 -13.57517 -13.52331 -13.06787 -12.92297 -12.74464 -12.42052 -12.08247 -12.02527 -11.86750 -11.47089 -10.98784 -10.82199 -10.73100 -10.46513 -10.29607 -9.96963 -9.94106 -9.77165 -9.44623 -9.18573 -8.81632 -8.38862 -7.87495 -6.02494 -4.09543 3.00429 3.29824 3.36230 3.38753 3.47075 3.84206 4.42226 4.65456 4.80859 4.88384 5.04658 5.27027 5.45858 5.61256 5.64251 5.66828 5.67445 5.74621 5.89593 5.92907 6.06588 6.16252 6.19212 6.34552 6.42337 6.49965 6.67002 6.82341 6.99577 7.18142 7.33937 7.68723 7.91676 8.04506 8.07290 8.37302 8.68703 8.94255 9.55365 11.03111 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041022 B = 0.006483 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.399118 B = 4318.140000 C = 4537.798509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.158 4.158 3 C 0.544 3.456 4 O -0.550 6.550 5 N -0.597 5.597 6 C 0.109 3.891 7 C -0.135 4.135 8 C -0.112 4.112 9 C 0.041 3.959 10 H 0.028 0.972 11 C -0.514 4.514 12 H 0.057 0.943 13 C 0.063 3.937 14 N -0.889 5.889 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.117 3.883 20 C -0.159 4.159 21 C -0.148 4.148 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.095 0.905 31 H 0.260 0.740 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.611 -9.524 3.419 13.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.161 4.161 3 C 0.331 3.669 4 O -0.429 6.429 5 N -0.328 5.328 6 C -0.014 4.014 7 C -0.173 4.173 8 C -0.150 4.150 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.553 4.553 12 H 0.075 0.925 13 C -0.138 4.138 14 N -0.528 5.528 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.004 4.004 20 C -0.197 4.197 21 C -0.186 4.186 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.193 -9.320 3.753 13.618 hybrid contribution 0.436 0.914 -0.325 1.063 sum -8.757 -8.406 3.429 12.613 Atomic orbital electron populations 1.21381 0.90455 1.02562 1.02464 1.21405 0.95940 0.90036 1.08737 1.19475 0.80036 0.84821 0.82589 1.90645 1.43390 1.74900 1.33952 1.48214 1.47473 1.21011 1.16122 1.21731 0.93318 0.99781 0.86619 1.21928 0.98916 1.01262 0.95214 1.21628 0.98084 0.91429 1.03903 1.18966 0.92818 0.97373 0.88679 0.95349 1.21085 1.29073 0.97826 1.07288 0.92478 1.24937 0.96140 0.96994 0.95744 1.69875 1.38252 1.33182 1.11499 0.86573 0.79789 0.84390 0.77138 1.20660 1.21243 1.19872 1.22014 0.95089 0.81586 1.01743 1.23151 1.02540 0.99081 0.94893 1.22973 1.02570 0.98739 0.94290 0.91856 0.91657 0.91484 0.90454 0.92208 0.92510 0.92439 0.94602 0.88674 0.92980 0.92706 0.90441 0.88066 0.88293 0.88043 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 8.97 37.16 0.33 -0.89 16 2 C -0.16 -2.22 1.36 -155.66 -0.21 -2.43 16 3 C 0.54 10.31 6.93 -10.98 -0.08 10.23 16 4 O -0.55 -12.48 16.19 5.56 0.09 -12.39 16 5 N -0.60 -11.38 2.98 -173.03 -0.52 -11.90 16 6 C 0.11 1.72 5.28 -3.93 -0.02 1.70 16 7 C -0.13 -2.41 6.06 -26.83 -0.16 -2.57 16 8 C -0.11 -2.53 4.96 -26.69 -0.13 -2.66 16 9 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.51 -14.02 8.56 -34.44 -0.29 -14.31 16 12 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 13 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 14 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16 15 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 C 0.12 2.58 5.64 -3.72 -0.02 2.56 16 20 C -0.16 -1.95 9.44 -26.73 -0.25 -2.20 16 21 C -0.15 -1.86 9.78 -26.73 -0.26 -2.12 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.57 7.89 -51.93 -0.41 0.16 16 24 H 0.07 0.75 6.46 -51.93 -0.34 0.42 16 25 H 0.08 1.02 4.84 -51.93 -0.25 0.77 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 2.42 6.05 -51.93 -0.31 2.11 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.85 7.03 -51.93 -0.37 1.48 16 34 H 0.10 0.97 8.04 -51.93 -0.42 0.55 16 35 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.10 1.44 8.04 -51.93 -0.42 1.02 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 293.56 15.07 4.42 4.42 Total: -1.00 -30.16 293.56 -7.65 -37.81 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.86 Total: 0.53 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -1.40 Total: -10.26 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.11 Total: -36.27 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.16 -7.65 -37.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397617033.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.055 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds