Wall clock time and date at job start Mon Mar 30 2020 17:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 115.54723 * 2 1 4 4 O 1.21277 * 119.99929 * 112.22967 * 3 2 1 5 5 N 1.34786 * 119.99916 * 292.22418 * 3 2 1 6 6 C 1.46922 * 120.62717 * 4.49425 * 5 3 2 7 7 C 1.52761 * 109.00834 * 233.57783 * 6 5 3 8 8 C 1.53039 * 109.38607 * 305.59582 * 7 6 5 9 9 C 1.53041 * 109.53715 * 61.23743 * 8 7 6 10 10 H 1.08997 * 109.49854 * 58.58485 * 9 8 7 11 11 C 1.50701 * 109.49582 * 178.68475 * 9 8 7 12 12 H 1.08003 * 119.99682 * 119.83571 * 11 9 8 13 13 C 1.37879 * 120.00080 * 299.83705 * 11 9 8 14 14 N 1.31518 * 119.99863 * 359.97438 * 13 11 9 15 15 Si 1.86794 * 119.99964 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47121 * 90.00065 * 15 13 11 17 17 H 1.48505 * 109.46884 * 209.99694 * 15 13 11 18 18 H 1.48494 * 109.47235 * 329.99726 * 15 13 11 19 19 C 1.46918 * 120.62993 * 184.77448 * 5 3 2 20 20 C 1.53002 * 117.50045 * 214.29664 * 2 1 3 21 21 C 1.52996 * 117.50115 * 145.66969 * 2 1 3 22 22 H 1.08993 * 109.47213 * 272.77711 * 1 2 3 23 23 H 1.09003 * 109.47338 * 152.77981 * 1 2 3 24 24 H 1.09001 * 109.47308 * 32.77974 * 1 2 3 25 25 H 1.08999 * 109.59197 * 353.42168 * 6 5 3 26 26 H 1.09003 * 109.58871 * 113.84542 * 6 5 3 27 27 H 1.08997 * 109.56841 * 185.55378 * 7 6 5 28 28 H 1.09001 * 109.38238 * 65.52066 * 7 6 5 29 29 H 1.09001 * 109.45878 * 301.21525 * 8 7 6 30 30 H 1.08998 * 109.45999 * 181.25939 * 8 7 6 31 31 H 0.96994 * 119.99974 * 180.02562 * 14 13 11 32 32 H 1.09002 * 109.58742 * 246.15593 * 19 5 3 33 33 H 1.09004 * 109.58891 * 6.57985 * 19 5 3 34 34 H 1.08996 * 117.49560 * 359.97438 * 20 2 1 35 35 H 1.09000 * 117.50116 * 145.01722 * 20 2 1 36 36 H 1.09000 * 117.49828 * 214.97470 * 21 2 1 37 37 H 1.08996 * 117.50016 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 2.7999 1.7354 0.9722 5 7 2.0722 2.1581 -1.0806 6 6 1.2439 1.7590 -2.2265 7 6 2.0881 1.8259 -3.4979 8 6 2.7068 3.2199 -3.6242 9 6 3.6172 3.4865 -2.4232 10 1 4.3953 2.7245 -2.3803 11 6 4.2510 4.8463 -2.5647 12 1 4.0789 5.6031 -1.8136 13 6 5.0506 5.1244 -3.6530 14 7 5.2605 4.2027 -4.5674 15 14 5.8369 6.8098 -3.8279 16 1 7.1660 6.8071 -3.1656 17 1 6.0022 7.1318 -5.2682 18 1 4.9676 7.8303 -3.1891 19 6 2.7857 3.4411 -1.1374 20 6 2.2365 -1.1212 -0.7647 21 6 2.2365 -1.1207 0.7653 22 1 -0.3633 0.0498 1.0264 23 1 -0.3634 -0.9139 -0.4701 24 1 -0.3634 0.8640 -0.5564 25 1 0.8850 0.7402 -2.0809 26 1 0.3958 2.4377 -2.3184 27 1 1.4583 1.6274 -4.3651 28 1 2.8807 1.0794 -3.4455 29 1 1.9143 3.9677 -3.6523 30 1 3.2913 3.2759 -4.5425 31 1 5.8233 4.3982 -5.3328 32 1 2.0660 4.2598 -1.1386 33 1 3.4439 3.5318 -0.2733 34 1 1.6112 -1.8590 -1.2674 35 1 3.1715 -0.8755 -1.2681 36 1 3.1716 -0.8747 1.2685 37 1 1.6113 -1.8578 1.2692 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397617033.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:05 Heat of formation + Delta-G solvation = -41.738903 kcal Electronic energy + Delta-G solvation = -17614.198153 eV Core-core repulsion = 14969.904350 eV Total energy + Delta-G solvation = -2644.293803 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.46342 -38.74120 -37.59020 -35.34263 -33.04055 -32.05231 -29.58623 -27.15305 -26.58443 -23.62023 -23.41222 -23.23015 -20.98790 -19.50610 -18.45361 -17.66456 -17.03434 -16.64223 -16.29491 -15.49279 -15.12370 -14.97937 -14.55052 -14.47802 -14.11151 -13.68226 -13.57523 -13.31916 -13.24522 -12.89177 -12.66602 -12.58189 -12.39590 -11.94344 -11.84960 -11.63272 -11.46921 -11.29771 -10.92188 -10.86462 -10.59527 -10.43265 -9.52020 -8.12870 -6.28272 1.39616 1.40644 1.50711 1.56974 2.05325 2.42169 2.77040 3.13615 3.49777 3.73737 3.91179 4.05433 4.14707 4.25535 4.32678 4.51514 4.59578 4.72233 4.78838 4.81409 4.83938 4.87744 4.95328 4.97269 4.98677 5.10476 5.22301 5.27730 5.30261 5.46803 5.55707 5.59460 5.90500 6.11226 6.32219 6.55062 6.80775 7.19097 7.39916 8.91028 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041022 B = 0.006483 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.399118 B = 4318.140000 C = 4537.798509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.169 4.169 3 C 0.533 3.467 4 O -0.600 6.600 5 N -0.601 5.601 6 C 0.110 3.890 7 C -0.127 4.127 8 C -0.106 4.106 9 C 0.043 3.957 10 H -0.015 1.015 11 C -0.540 4.540 12 H 0.051 0.949 13 C 0.018 3.982 14 N -0.913 5.913 15 Si 0.956 3.044 16 H -0.280 1.280 17 H -0.278 1.278 18 H -0.267 1.267 19 C 0.128 3.872 20 C -0.145 4.145 21 C -0.147 4.147 22 H 0.066 0.934 23 H 0.100 0.900 24 H 0.065 0.935 25 H 0.115 0.885 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.063 0.937 31 H 0.262 0.738 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.142 0.858 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.898 -10.887 2.871 16.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.172 4.172 3 C 0.322 3.678 4 O -0.482 6.482 5 N -0.331 5.331 6 C -0.011 4.011 7 C -0.165 4.165 8 C -0.144 4.144 9 C 0.024 3.976 10 H 0.003 0.997 11 C -0.579 4.579 12 H 0.069 0.931 13 C -0.182 4.182 14 N -0.552 5.552 15 Si 0.781 3.219 16 H -0.206 1.206 17 H -0.204 1.204 18 H -0.192 1.192 19 C 0.006 3.994 20 C -0.182 4.182 21 C -0.184 4.184 22 H 0.085 0.915 23 H 0.119 0.881 24 H 0.084 0.916 25 H 0.133 0.867 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.160 0.840 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.503 -10.699 3.188 16.030 hybrid contribution 1.216 1.336 -0.132 1.811 sum -10.287 -9.363 3.056 14.242 Atomic orbital electron populations 1.21434 0.87405 1.04286 1.03238 1.21443 0.97831 0.87053 1.10915 1.20500 0.79268 0.86459 0.81540 1.90611 1.45567 1.76270 1.35778 1.48300 1.47415 1.19917 1.17489 1.21974 0.92662 1.02458 0.84035 1.21841 0.99227 0.97490 0.97930 1.21429 0.97330 0.94721 1.00930 1.18857 0.92557 0.94973 0.91205 0.99704 1.21438 1.30087 0.98904 1.07450 0.93070 1.25691 0.96537 1.00558 0.95375 1.70005 1.38547 1.34823 1.11789 0.85589 0.78701 0.80187 0.77385 1.20579 1.20350 1.19190 1.21576 0.94808 0.83939 0.99092 1.23266 1.01807 0.98409 0.94672 1.23077 1.01836 0.98638 0.94875 0.91538 0.88127 0.91646 0.86706 0.90233 0.89013 0.93703 0.94393 0.91827 0.92852 0.92103 0.93331 0.84008 0.90656 0.90790 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 8.97 71.98 0.65 -1.24 16 2 C -0.17 -4.35 1.36 -52.93 -0.07 -4.42 16 3 C 0.53 20.21 6.93 87.66 0.61 20.82 16 4 O -0.60 -28.33 16.19 -3.02 -0.05 -28.38 16 5 N -0.60 -22.81 2.98 -819.74 -2.44 -25.25 16 6 C 0.11 3.20 5.28 86.22 0.46 3.66 16 7 C -0.13 -4.32 6.06 30.53 0.19 -4.13 16 8 C -0.11 -4.81 4.96 30.62 0.15 -4.66 16 9 C 0.04 2.24 2.25 -11.46 -0.03 2.21 16 10 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 11 C -0.54 -30.54 8.56 25.60 0.22 -30.32 16 12 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 13 C 0.02 0.98 5.30 84.65 0.45 1.43 16 14 N -0.91 -52.62 11.32 21.45 0.24 -52.37 16 15 Si 0.96 44.06 29.54 68.60 2.03 46.08 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 C 0.13 5.91 5.64 86.36 0.49 6.40 16 20 C -0.14 -3.08 9.44 30.60 0.29 -2.79 16 21 C -0.15 -3.37 9.78 30.59 0.30 -3.07 16 22 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.10 1.11 7.89 -2.39 -0.02 1.09 16 24 H 0.06 1.18 6.46 -2.39 -0.02 1.17 16 25 H 0.11 2.53 4.84 -2.39 -0.01 2.52 16 26 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.09 2.52 8.14 -2.39 -0.02 2.51 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 3.30 6.05 -2.39 -0.01 3.29 16 31 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.05 2.47 7.03 -2.39 -0.02 2.46 16 34 H 0.14 1.92 8.04 -2.39 -0.02 1.90 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.11 8.04 -2.39 -0.02 2.09 16 37 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -69.89 293.56 4.51 -65.38 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.04 Total: 10.65 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 3.69 Total: -16.12 kcal Atomic # 7 Polarization: -75.43 SS G_CDS: -2.20 Total: -77.62 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.05 Total: -28.38 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -69.89 4.51 -65.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397617033.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.644 kcal (2) G-P(sol) polarization free energy of solvation -69.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds