Wall clock time and date at job start Mon Mar 30 2020 17:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00015 * 2 1 4 4 H 1.48501 * 109.47220 * 240.00021 * 3 2 1 5 5 H 1.48497 * 109.47380 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46900 * 120.00417 * 3 2 1 7 7 C 1.37877 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99879 * 173.55608 * 7 2 1 9 9 C 1.50700 * 120.00161 * 353.55382 * 7 2 1 10 10 C 1.53004 * 115.54804 * 85.40329 * 9 7 2 11 11 N 1.46505 * 109.47075 * 65.14562 * 10 9 7 12 12 C 1.34776 * 119.99951 * 178.27776 * 11 10 9 13 13 O 1.21278 * 119.99904 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99679 * 179.97438 * 12 11 10 15 15 C 1.53005 * 109.46826 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.46915 * 179.97438 * 15 14 12 17 17 C 1.53006 * 117.51791 * 116.28672 * 16 15 14 18 18 C 1.52995 * 59.99785 * 107.48089 * 17 16 15 19 19 C 1.52991 * 117.50060 * 231.07555 * 9 7 2 20 20 C 1.53004 * 117.50110 * 299.73907 * 9 7 2 21 21 H 0.96999 * 120.00264 * 5.06300 * 1 2 3 22 22 H 1.08998 * 109.47457 * 305.13978 * 10 9 7 23 23 H 1.09006 * 109.47228 * 185.14228 * 10 9 7 24 24 H 0.97000 * 119.99393 * 358.27384 * 11 10 9 25 25 H 1.08999 * 109.47233 * 60.00018 * 14 12 11 26 26 H 1.08994 * 109.47377 * 299.99982 * 14 12 11 27 27 H 1.08999 * 109.46948 * 60.00152 * 15 14 12 28 28 H 1.08994 * 109.47380 * 300.00289 * 15 14 12 29 29 H 1.09006 * 115.55156 * 330.58799 * 16 15 14 30 30 H 1.09000 * 117.49915 * 214.97116 * 17 16 15 31 31 H 1.08999 * 117.49479 * 359.97438 * 17 16 15 32 32 H 1.09002 * 117.50057 * 252.51244 * 18 17 16 33 33 H 1.09003 * 117.50066 * 107.49304 * 18 17 16 34 34 H 1.09002 * 117.50354 * 215.00437 * 19 9 7 35 35 H 1.09004 * 117.50254 * 0.02586 * 19 9 7 36 36 H 1.09007 * 117.49342 * 359.97165 * 20 9 7 37 37 H 1.08997 * 117.50316 * 144.97185 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0794 -1.1970 -0.1055 9 6 1.2581 -2.4951 0.1454 10 6 0.7020 -3.0859 -1.1518 11 7 1.8111 -3.4583 -2.0336 12 6 1.5599 -4.0346 -3.2258 13 8 0.4157 -4.2453 -3.5683 14 6 2.7007 -4.4171 -4.1331 15 6 2.1459 -5.0480 -5.4118 16 6 3.3041 -5.4357 -6.3332 17 6 3.4944 -6.9221 -6.6424 18 6 2.9525 -5.9800 -7.7192 19 6 1.7470 -3.4739 1.2149 20 6 0.4416 -2.7018 1.4228 21 1 -0.4850 0.8367 -0.0741 22 1 0.0753 -2.3456 -1.6489 23 1 0.1074 -3.9703 -0.9227 24 1 2.7262 -3.2900 -1.7594 25 1 3.3448 -5.1344 -3.6244 26 1 3.2771 -3.5275 -4.3869 27 1 1.5016 -4.3310 -5.9207 28 1 1.5697 -5.9376 -5.1577 29 1 4.2001 -4.8210 -6.2464 30 1 4.5155 -7.2852 -6.7588 31 1 2.7946 -7.6240 -6.1889 32 1 1.8959 -6.0621 -7.9744 33 1 3.6170 -5.7234 -8.5442 34 1 1.6725 -4.5388 0.9944 35 1 2.6082 -3.1766 1.8133 36 1 0.4447 -1.8968 2.1578 37 1 -0.4918 -3.2583 1.3390 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403992904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:22 Heat of formation + Delta-G solvation = -10.395874 kcal Electronic energy + Delta-G solvation = -16475.298093 eV Core-core repulsion = 13832.363425 eV Total energy + Delta-G solvation = -2642.934668 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.16031 -37.54787 -36.62755 -33.22334 -32.03514 -31.92010 -26.78301 -25.44517 -23.84723 -22.46238 -21.20242 -20.40744 -19.65895 -19.18651 -16.63076 -16.07185 -15.68635 -15.21601 -14.78729 -14.65158 -14.20709 -13.69856 -13.42564 -12.83498 -12.54538 -12.05043 -11.80514 -11.63665 -11.57817 -11.23299 -11.10643 -11.00635 -10.92112 -10.55613 -10.36349 -10.27749 -9.90660 -9.65701 -9.22692 -8.97642 -8.50608 -8.26589 -8.05497 -6.08538 -4.17533 3.26011 3.27633 3.32392 3.33418 3.69502 3.92903 4.34499 4.67360 4.83234 4.87155 5.10661 5.19517 5.29678 5.37585 5.50021 5.52958 5.58471 5.80954 5.87386 5.99240 6.00992 6.05845 6.21361 6.33573 6.41406 6.47062 6.57669 6.68692 6.90184 7.08849 7.31474 7.43562 7.48606 7.80303 8.32851 8.35101 8.82885 8.94229 9.49299 10.99314 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028944 B = 0.005094 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.147040 B = 5495.671937 C = 5980.006761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.502 4.502 8 H 0.059 0.941 9 C 0.028 3.972 10 C 0.162 3.838 11 N -0.705 5.705 12 C 0.501 3.499 13 O -0.561 6.561 14 C -0.137 4.137 15 C -0.072 4.072 16 C -0.151 4.151 17 C -0.183 4.183 18 C -0.183 4.183 19 C -0.211 4.211 20 C -0.148 4.148 21 H 0.262 0.738 22 H 0.071 0.929 23 H 0.036 0.964 24 H 0.400 0.600 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.056 -8.968 -8.445 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.027 3.973 10 C 0.039 3.961 11 N -0.353 5.353 12 C 0.287 3.713 13 O -0.441 6.441 14 C -0.177 4.177 15 C -0.110 4.110 16 C -0.169 4.169 17 C -0.220 4.220 18 C -0.220 4.220 19 C -0.248 4.248 20 C -0.187 4.187 21 H 0.072 0.928 22 H 0.089 0.911 23 H 0.054 0.946 24 H 0.234 0.766 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.047 -8.969 -8.595 13.816 hybrid contribution 0.876 1.093 0.190 1.413 sum 6.922 -7.876 -8.405 13.438 Atomic orbital electron populations 1.69966 1.05912 1.27066 1.48092 1.24988 0.94801 0.98952 0.94276 0.86687 0.79656 0.83171 0.78633 1.20248 1.21266 1.20183 1.20302 0.92791 0.88631 1.52211 0.92238 1.19035 0.98565 0.93910 0.85783 1.20978 0.87473 0.96836 0.90783 1.46010 1.11367 1.60076 1.17857 1.20594 0.90445 0.78015 0.82265 1.90646 1.23081 1.55825 1.74544 1.21631 0.97624 1.02329 0.96161 1.20897 0.95487 1.01317 0.93300 1.22397 1.00751 0.96421 0.97379 1.23038 1.02060 0.93135 1.03771 1.22950 1.01907 1.04750 0.92386 1.23020 0.98667 0.95651 1.07455 1.22493 0.92262 1.01085 1.02824 0.92765 0.91055 0.94605 0.76636 0.89327 0.89139 0.90864 0.91218 0.87771 0.89111 0.88803 0.88789 0.89052 0.91673 0.90364 0.89835 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.32 12.91 55.43 0.72 -23.61 16 2 C 0.07 1.96 5.39 -17.82 -0.10 1.87 16 3 Si 0.89 20.49 29.55 -169.99 -5.02 15.47 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.50 -12.87 8.63 -34.44 -0.30 -13.16 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.03 0.65 1.38 -155.66 -0.21 0.44 16 10 C 0.16 3.72 5.50 -4.04 -0.02 3.70 16 11 N -0.70 -13.67 5.48 -60.29 -0.33 -14.00 16 12 C 0.50 9.28 7.83 -10.99 -0.09 9.20 16 13 O -0.56 -12.53 15.98 5.56 0.09 -12.44 16 14 C -0.14 -1.82 5.66 -27.88 -0.16 -1.98 16 15 C -0.07 -0.93 4.78 -26.73 -0.13 -1.05 16 16 C -0.15 -1.57 5.73 -90.62 -0.52 -2.09 16 17 C -0.18 -1.71 10.18 -26.73 -0.27 -1.98 16 18 C -0.18 -1.73 10.25 -26.74 -0.27 -2.00 16 19 C -0.21 -4.37 9.96 -26.70 -0.27 -4.64 16 20 C -0.15 -3.40 9.42 -26.69 -0.25 -3.66 16 21 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 22 H 0.07 1.88 8.14 -51.93 -0.42 1.46 16 23 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 24 H 0.40 7.01 8.37 -40.82 -0.34 6.67 16 25 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 28 H 0.07 0.95 7.84 -51.93 -0.41 0.55 16 29 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.88 8.03 -51.93 -0.42 0.47 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.08 2.03 8.14 -51.92 -0.42 1.61 16 37 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 316.01 15.07 4.76 4.76 Total: -1.00 -29.18 316.01 -8.57 -37.75 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.20 Total: 7.42 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -2.58 Total: -15.36 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.39 Total: -37.61 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.18 -8.57 -37.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403992904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.358 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds