Wall clock time and date at job start Mon Mar 30 2020 17:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00015 * 2 1 4 4 H 1.48501 * 109.47220 * 240.00021 * 3 2 1 5 5 H 1.48497 * 109.47380 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46900 * 120.00417 * 3 2 1 7 7 C 1.37877 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99879 * 173.55608 * 7 2 1 9 9 C 1.50700 * 120.00161 * 353.55382 * 7 2 1 10 10 C 1.53004 * 115.54804 * 85.40329 * 9 7 2 11 11 N 1.46505 * 109.47075 * 65.14562 * 10 9 7 12 12 C 1.34776 * 119.99951 * 178.27776 * 11 10 9 13 13 O 1.21278 * 119.99904 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99679 * 179.97438 * 12 11 10 15 15 C 1.53005 * 109.46826 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.46915 * 179.97438 * 15 14 12 17 17 C 1.53006 * 117.51791 * 116.28672 * 16 15 14 18 18 C 1.52995 * 59.99785 * 107.48089 * 17 16 15 19 19 C 1.52991 * 117.50060 * 231.07555 * 9 7 2 20 20 C 1.53004 * 117.50110 * 299.73907 * 9 7 2 21 21 H 0.96999 * 120.00264 * 5.06300 * 1 2 3 22 22 H 1.08998 * 109.47457 * 305.13978 * 10 9 7 23 23 H 1.09006 * 109.47228 * 185.14228 * 10 9 7 24 24 H 0.97000 * 119.99393 * 358.27384 * 11 10 9 25 25 H 1.08999 * 109.47233 * 60.00018 * 14 12 11 26 26 H 1.08994 * 109.47377 * 299.99982 * 14 12 11 27 27 H 1.08999 * 109.46948 * 60.00152 * 15 14 12 28 28 H 1.08994 * 109.47380 * 300.00289 * 15 14 12 29 29 H 1.09006 * 115.55156 * 330.58799 * 16 15 14 30 30 H 1.09000 * 117.49915 * 214.97116 * 17 16 15 31 31 H 1.08999 * 117.49479 * 359.97438 * 17 16 15 32 32 H 1.09002 * 117.50057 * 252.51244 * 18 17 16 33 33 H 1.09003 * 117.50066 * 107.49304 * 18 17 16 34 34 H 1.09002 * 117.50354 * 215.00437 * 19 9 7 35 35 H 1.09004 * 117.50254 * 0.02586 * 19 9 7 36 36 H 1.09007 * 117.49342 * 359.97165 * 20 9 7 37 37 H 1.08997 * 117.50316 * 144.97185 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0794 -1.1970 -0.1055 9 6 1.2581 -2.4951 0.1454 10 6 0.7020 -3.0859 -1.1518 11 7 1.8111 -3.4583 -2.0336 12 6 1.5599 -4.0346 -3.2258 13 8 0.4157 -4.2453 -3.5683 14 6 2.7007 -4.4171 -4.1331 15 6 2.1459 -5.0480 -5.4118 16 6 3.3041 -5.4357 -6.3332 17 6 3.4944 -6.9221 -6.6424 18 6 2.9525 -5.9800 -7.7192 19 6 1.7470 -3.4739 1.2149 20 6 0.4416 -2.7018 1.4228 21 1 -0.4850 0.8367 -0.0741 22 1 0.0753 -2.3456 -1.6489 23 1 0.1074 -3.9703 -0.9227 24 1 2.7262 -3.2900 -1.7594 25 1 3.3448 -5.1344 -3.6244 26 1 3.2771 -3.5275 -4.3869 27 1 1.5016 -4.3310 -5.9207 28 1 1.5697 -5.9376 -5.1577 29 1 4.2001 -4.8210 -6.2464 30 1 4.5155 -7.2852 -6.7588 31 1 2.7946 -7.6240 -6.1889 32 1 1.8959 -6.0621 -7.9744 33 1 3.6170 -5.7234 -8.5442 34 1 1.6725 -4.5388 0.9944 35 1 2.6082 -3.1766 1.8133 36 1 0.4447 -1.8968 2.1578 37 1 -0.4918 -3.2583 1.3390 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403992904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:21 Heat of formation + Delta-G solvation = -27.017171 kcal Electronic energy + Delta-G solvation = -16476.018846 eV Core-core repulsion = 13832.363425 eV Total energy + Delta-G solvation = -2643.655421 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.67604 -38.65973 -38.16878 -34.90283 -33.96983 -33.07858 -28.42835 -27.33511 -25.14666 -23.17401 -22.96575 -21.35629 -21.27780 -20.86403 -18.32187 -17.63410 -16.87253 -16.62037 -16.54570 -16.10351 -15.60437 -15.07733 -14.82484 -14.43915 -14.05851 -13.58945 -13.45801 -12.99915 -12.92924 -12.78383 -12.39790 -12.38082 -12.19761 -12.08319 -12.04759 -11.48659 -11.18547 -10.86984 -10.82288 -10.70807 -10.45047 -10.03771 -9.80039 -8.09428 -6.23083 1.44209 1.45790 1.52300 1.79316 2.40561 2.46378 2.96659 3.18788 3.48884 3.79787 3.89799 4.09492 4.13740 4.24942 4.36110 4.48098 4.55502 4.64904 4.66819 4.72864 4.80738 4.84020 4.99116 5.06439 5.09659 5.10979 5.19671 5.26662 5.32159 5.47496 5.58753 5.60884 5.70773 5.78522 6.36719 6.80897 6.86192 7.44460 7.47058 8.98055 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028944 B = 0.005094 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.147040 B = 5495.671937 C = 5980.006761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.024 3.976 3 Si 0.951 3.049 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.005 3.995 10 C 0.178 3.822 11 N -0.701 5.701 12 C 0.496 3.504 13 O -0.605 6.605 14 C -0.124 4.124 15 C -0.069 4.069 16 C -0.157 4.157 17 C -0.177 4.177 18 C -0.185 4.185 19 C -0.175 4.175 20 C -0.162 4.162 21 H 0.259 0.741 22 H 0.026 0.974 23 H 0.032 0.968 24 H 0.411 0.589 25 H 0.119 0.881 26 H 0.112 0.888 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.714 -9.727 -8.922 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.777 3.223 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.543 4.543 8 H 0.084 0.916 9 C 0.005 3.995 10 C 0.053 3.947 11 N -0.350 5.350 12 C 0.284 3.716 13 O -0.487 6.487 14 C -0.164 4.164 15 C -0.107 4.107 16 C -0.175 4.175 17 C -0.214 4.214 18 C -0.222 4.222 19 C -0.212 4.212 20 C -0.200 4.200 21 H 0.067 0.933 22 H 0.044 0.956 23 H 0.050 0.950 24 H 0.247 0.753 25 H 0.137 0.863 26 H 0.130 0.870 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.138 0.862 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.751 -9.738 -9.071 15.928 hybrid contribution 0.016 1.281 0.329 1.323 sum 8.767 -8.457 -8.742 14.993 Atomic orbital electron populations 1.70106 1.07390 1.27408 1.49816 1.25730 0.95432 1.02184 0.94337 0.85724 0.78346 0.79267 0.78945 1.19454 1.21885 1.19450 1.20646 0.93201 0.89505 1.50958 0.91599 1.19067 0.99635 0.94561 0.86281 1.20531 0.88060 0.95283 0.90815 1.45924 1.10975 1.60170 1.17949 1.21588 0.91312 0.76594 0.82080 1.90628 1.25443 1.57363 1.75289 1.21655 0.95697 1.03949 0.95062 1.20817 0.96207 1.00105 0.93560 1.22322 1.00197 0.97578 0.97395 1.23112 1.02915 0.92335 1.03037 1.23035 1.01973 1.04616 0.92574 1.23006 0.97297 0.96241 1.04632 1.22434 0.93781 1.01468 1.02331 0.93253 0.95568 0.94958 0.75276 0.86306 0.86976 0.92976 0.92659 0.86212 0.87376 0.89251 0.89532 0.87521 0.89315 0.89419 0.91832 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.74 12.91 21.45 0.28 -51.46 16 2 C 0.02 1.26 5.39 84.65 0.46 1.71 16 3 Si 0.95 41.90 29.55 68.60 2.03 43.93 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.51 -25.60 8.63 25.60 0.22 -25.37 16 8 H 0.07 3.18 7.82 -2.91 -0.02 3.16 16 9 C 0.01 0.25 1.38 -52.93 -0.07 0.17 16 10 C 0.18 8.25 5.50 86.38 0.48 8.72 16 11 N -0.70 -26.60 5.48 -463.04 -2.54 -29.14 16 12 C 0.50 18.06 7.83 87.66 0.69 18.74 16 13 O -0.60 -27.52 15.98 -3.02 -0.05 -27.57 16 14 C -0.12 -3.01 5.66 29.85 0.17 -2.84 16 15 C -0.07 -1.69 4.78 30.60 0.15 -1.54 16 16 C -0.16 -2.86 5.73 -10.79 -0.06 -2.93 16 17 C -0.18 -2.85 10.18 30.59 0.31 -2.54 16 18 C -0.19 -3.12 10.25 30.59 0.31 -2.81 16 19 C -0.17 -6.88 9.96 30.62 0.30 -6.58 16 20 C -0.16 -7.42 9.42 30.62 0.29 -7.13 16 21 H 0.26 14.26 8.32 -92.71 -0.77 13.49 16 22 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.03 1.49 8.09 -2.38 -0.02 1.47 16 24 H 0.41 13.60 8.37 -92.71 -0.78 12.83 16 25 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.05 1.48 8.10 -2.39 -0.02 1.46 16 28 H 0.05 1.49 7.84 -2.39 -0.02 1.47 16 29 H 0.12 1.84 8.08 -2.38 -0.02 1.82 16 30 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 1.52 8.03 -2.39 -0.02 1.50 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 36 H 0.06 3.13 8.14 -2.38 -0.02 3.11 16 37 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -63.75 316.01 3.22 -60.53 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.26 Total: 26.10 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 3.24 Total: -22.38 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -2.26 Total: -80.60 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.05 Total: -27.57 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -63.75 3.22 -60.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403992904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.511 kcal (2) G-P(sol) polarization free energy of solvation -63.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds