Wall clock time and date at job start Mon Mar 30 2020 17:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 115.54963 * 2 1 4 4 C 1.50699 * 109.46996 * 278.03169 * 3 2 1 5 5 O 1.21286 * 120.00248 * 5.57580 * 4 3 2 6 6 N 1.34777 * 120.00145 * 185.57696 * 4 3 2 7 7 C 1.46497 * 120.00374 * 185.02316 * 6 4 3 8 8 C 1.52996 * 109.47334 * 184.63245 * 7 6 4 9 9 C 1.50692 * 115.55190 * 296.60383 * 8 7 6 10 10 H 1.08005 * 120.00302 * 92.14331 * 9 8 7 11 11 C 1.37881 * 120.00151 * 272.14310 * 9 8 7 12 12 N 1.31508 * 120.00192 * 183.15846 * 11 9 8 13 13 Si 1.86802 * 119.99802 * 3.15326 * 11 9 8 14 14 H 1.48501 * 109.47176 * 265.34181 * 13 11 9 15 15 H 1.48504 * 109.46828 * 25.34248 * 13 11 9 16 16 H 1.48498 * 109.47090 * 145.33788 * 13 11 9 17 17 C 1.53002 * 117.49625 * 82.27229 * 8 7 6 18 18 C 1.53003 * 117.49864 * 150.92758 * 8 7 6 19 19 C 1.53001 * 117.51946 * 145.69862 * 2 1 3 20 20 C 1.52998 * 59.99964 * 107.48452 * 19 2 1 21 21 H 1.08998 * 109.47089 * 65.55617 * 1 2 3 22 22 H 1.08999 * 109.46742 * 185.55354 * 1 2 3 23 23 H 1.08994 * 109.47128 * 305.55610 * 1 2 3 24 24 H 1.09001 * 109.47127 * 158.03181 * 3 2 1 25 25 H 1.09001 * 109.46745 * 38.03005 * 3 2 1 26 26 H 0.97000 * 119.99791 * 5.01990 * 6 4 3 27 27 H 1.09001 * 109.47330 * 64.63160 * 7 6 4 28 28 H 1.09004 * 109.47025 * 304.63645 * 7 6 4 29 29 H 0.97001 * 120.00368 * 179.97438 * 12 11 9 30 30 H 1.09005 * 117.50057 * 215.00644 * 17 8 7 31 31 H 1.09001 * 117.49918 * 0.02562 * 17 8 7 32 32 H 1.09000 * 117.49987 * 359.97438 * 18 8 7 33 33 H 1.08998 * 117.49499 * 144.97231 * 18 8 7 34 34 H 1.08996 * 117.50281 * 214.97057 * 19 2 1 35 35 H 1.09001 * 117.49901 * 359.97438 * 19 2 1 36 36 H 1.09003 * 117.49905 * 252.51559 * 20 19 2 37 37 H 1.08996 * 117.50436 * 107.49138 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2274 1.9192 -1.4069 5 8 1.6824 1.3114 -2.3038 6 7 2.8667 3.0765 -1.6685 7 6 2.8105 3.6569 -3.0124 8 6 3.7059 4.8961 -3.0706 9 6 3.2985 6.0352 -2.1721 10 1 3.7098 6.1114 -1.1764 11 6 2.4006 6.9803 -2.6212 12 7 2.0924 8.0081 -1.8608 13 14 1.6220 6.8009 -4.3097 14 1 2.4063 7.5794 -5.3017 15 1 1.6123 5.3682 -4.7006 16 1 0.2284 7.3122 -4.2691 17 6 5.2029 4.6759 -3.2975 18 6 4.3348 5.2505 -4.4197 19 6 2.2370 -1.1209 0.7647 20 6 2.2365 -1.1207 -0.7653 21 1 -0.3633 0.4252 -0.9355 22 1 -0.3633 -1.0229 0.0995 23 1 -0.3633 0.5976 0.8360 24 1 3.2065 1.2972 0.3844 25 1 1.6162 2.0573 0.6331 26 1 3.3640 3.5252 -0.9668 27 1 1.7835 3.9396 -3.2435 28 1 3.1578 2.9232 -3.7399 29 1 1.4610 8.6732 -2.1769 30 1 5.8931 5.3550 -2.7968 31 1 5.5498 3.6483 -3.4057 32 1 4.1110 4.6006 -5.2656 33 1 4.4534 6.3076 -4.6574 34 1 3.1721 -0.8750 1.2677 35 1 1.6120 -1.8584 1.2683 36 1 1.6113 -1.8582 -1.2685 37 1 3.1713 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404067520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:24 Heat of formation + Delta-G solvation = 0.250285 kcal Electronic energy + Delta-G solvation = -16983.530592 eV Core-core repulsion = 14341.057577 eV Total energy + Delta-G solvation = -2642.473015 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.54762 -37.68484 -36.71825 -33.35412 -32.15130 -29.75230 -28.18163 -26.32830 -24.94073 -22.36271 -21.74886 -20.22245 -19.39695 -18.61508 -16.68423 -16.20271 -15.61646 -15.28570 -14.84902 -14.50794 -13.96403 -13.78150 -13.17781 -12.87119 -12.62577 -12.44564 -12.32022 -12.15280 -11.62965 -11.45235 -11.18211 -11.11100 -10.77431 -10.54311 -10.18573 -10.16852 -9.76563 -9.67595 -9.21602 -9.17191 -8.65934 -8.57979 -8.24103 -6.18377 -4.22917 3.18009 3.26746 3.37197 3.42835 3.59111 4.08543 4.38010 4.70142 4.84818 4.88142 5.01464 5.10175 5.11217 5.47765 5.59354 5.65959 5.69698 5.71880 5.91964 5.97417 6.01354 6.04179 6.06939 6.13816 6.21434 6.26968 6.39171 6.41825 6.53268 6.70055 6.98606 7.06514 7.18257 7.66398 8.23140 8.38637 8.81527 8.83708 9.45062 10.92837 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032403 B = 0.006180 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.901382 B = 4529.850909 C = 4766.972147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.106 4.106 3 C -0.106 4.106 4 C 0.505 3.495 5 O -0.551 6.551 6 N -0.707 5.707 7 C 0.157 3.843 8 C -0.016 4.016 9 C -0.491 4.491 10 H 0.078 0.922 11 C 0.081 3.919 12 N -0.895 5.895 13 Si 0.877 3.123 14 H -0.279 1.279 15 H -0.256 1.256 16 H -0.293 1.293 17 C -0.178 4.178 18 C -0.193 4.193 19 C -0.182 4.182 20 C -0.156 4.156 21 H 0.068 0.932 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.404 0.596 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.265 0.735 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 -13.347 3.440 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.106 4.106 3 C -0.146 4.146 4 C 0.291 3.709 5 O -0.429 6.429 6 N -0.356 5.356 7 C 0.033 3.967 8 C -0.017 4.017 9 C -0.528 4.528 10 H 0.096 0.904 11 C -0.123 4.123 12 N -0.531 5.531 13 Si 0.705 3.295 14 H -0.205 1.205 15 H -0.180 1.180 16 H -0.220 1.220 17 C -0.216 4.216 18 C -0.230 4.230 19 C -0.219 4.219 20 C -0.193 4.193 21 H 0.087 0.913 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.116 0.884 26 H 0.239 0.761 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.461 -13.579 2.806 13.874 hybrid contribution -0.185 0.429 -0.601 0.761 sum 0.276 -13.150 2.205 13.337 Atomic orbital electron populations 1.21292 0.91929 1.01296 1.02408 1.21024 0.94920 0.89611 1.05085 1.21228 1.02208 0.95843 0.95369 1.20522 0.78765 0.80947 0.90645 1.90640 1.46143 1.58799 1.47356 1.45913 1.52417 1.23203 1.14106 1.21103 1.00159 0.93181 0.82229 1.19625 0.90619 0.95369 0.96112 1.20183 1.26264 1.05743 1.00646 0.90394 1.24960 0.95574 0.94449 0.97268 1.69885 1.34114 1.11650 1.37500 0.86870 0.78277 0.79611 0.84739 1.20484 1.17972 1.21970 1.22838 0.95494 0.99563 1.03656 1.22940 1.07040 1.00749 0.92310 1.23177 1.02211 1.01427 0.95088 1.22834 1.02328 1.00967 0.93140 0.91350 0.92896 0.92522 0.89342 0.88367 0.76141 0.92153 0.93717 0.92479 0.89431 0.90957 0.90785 0.89204 0.89009 0.89009 0.89077 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.68 37.16 0.36 -1.03 16 2 C -0.11 -1.35 1.60 -154.51 -0.25 -1.60 16 3 C -0.11 -1.42 5.66 -27.88 -0.16 -1.58 16 4 C 0.51 8.90 7.68 -10.99 -0.08 8.81 16 5 O -0.55 -11.37 15.02 5.55 0.08 -11.28 16 6 N -0.71 -13.09 5.46 -60.30 -0.33 -13.42 16 7 C 0.16 3.31 5.15 -4.05 -0.02 3.29 16 8 C -0.02 -0.35 0.85 -155.66 -0.13 -0.48 16 9 C -0.49 -12.79 9.10 -34.44 -0.31 -13.10 16 10 H 0.08 2.18 8.06 -52.48 -0.42 1.75 16 11 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 12 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 13 Si 0.88 21.31 24.95 -169.99 -4.24 17.07 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 15 H -0.26 -5.98 5.61 56.52 0.32 -5.66 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 C -0.18 -3.44 9.96 -26.69 -0.27 -3.71 16 18 C -0.19 -3.97 7.57 -26.69 -0.20 -4.17 16 19 C -0.18 -1.91 9.86 -26.73 -0.26 -2.17 16 20 C -0.16 -1.96 9.08 -26.73 -0.24 -2.20 16 21 H 0.07 0.99 7.74 -51.93 -0.40 0.59 16 22 H 0.05 0.57 8.09 -51.93 -0.42 0.15 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.09 1.00 7.93 -51.93 -0.41 0.59 16 25 H 0.10 1.21 8.12 -51.93 -0.42 0.79 16 26 H 0.40 6.98 8.28 -40.82 -0.34 6.64 16 27 H 0.06 1.41 6.62 -51.93 -0.34 1.06 16 28 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 29 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.09 1.94 7.28 -51.93 -0.38 1.56 16 34 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 304.42 15.07 4.59 4.59 Total: -1.00 -29.81 304.42 -6.95 -36.76 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.15 Total: 7.58 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -1.67 Total: -15.82 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.44 Total: -38.90 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.24 Total: 17.07 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.81 -6.95 -36.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404067520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.010 kcal (2) G-P(sol) polarization free energy of solvation -29.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds