Wall clock time and date at job start Mon Mar 30 2020 17:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 115.54963 * 2 1 4 4 C 1.50699 * 109.46996 * 278.03169 * 3 2 1 5 5 O 1.21286 * 120.00248 * 5.57580 * 4 3 2 6 6 N 1.34777 * 120.00145 * 185.57696 * 4 3 2 7 7 C 1.46497 * 120.00374 * 185.02316 * 6 4 3 8 8 C 1.52996 * 109.47334 * 184.63245 * 7 6 4 9 9 C 1.50692 * 115.55190 * 296.60383 * 8 7 6 10 10 H 1.08005 * 120.00302 * 92.14331 * 9 8 7 11 11 C 1.37881 * 120.00151 * 272.14310 * 9 8 7 12 12 N 1.31508 * 120.00192 * 183.15846 * 11 9 8 13 13 Si 1.86802 * 119.99802 * 3.15326 * 11 9 8 14 14 H 1.48501 * 109.47176 * 265.34181 * 13 11 9 15 15 H 1.48504 * 109.46828 * 25.34248 * 13 11 9 16 16 H 1.48498 * 109.47090 * 145.33788 * 13 11 9 17 17 C 1.53002 * 117.49625 * 82.27229 * 8 7 6 18 18 C 1.53003 * 117.49864 * 150.92758 * 8 7 6 19 19 C 1.53001 * 117.51946 * 145.69862 * 2 1 3 20 20 C 1.52998 * 59.99964 * 107.48452 * 19 2 1 21 21 H 1.08998 * 109.47089 * 65.55617 * 1 2 3 22 22 H 1.08999 * 109.46742 * 185.55354 * 1 2 3 23 23 H 1.08994 * 109.47128 * 305.55610 * 1 2 3 24 24 H 1.09001 * 109.47127 * 158.03181 * 3 2 1 25 25 H 1.09001 * 109.46745 * 38.03005 * 3 2 1 26 26 H 0.97000 * 119.99791 * 5.01990 * 6 4 3 27 27 H 1.09001 * 109.47330 * 64.63160 * 7 6 4 28 28 H 1.09004 * 109.47025 * 304.63645 * 7 6 4 29 29 H 0.97001 * 120.00368 * 179.97438 * 12 11 9 30 30 H 1.09005 * 117.50057 * 215.00644 * 17 8 7 31 31 H 1.09001 * 117.49918 * 0.02562 * 17 8 7 32 32 H 1.09000 * 117.49987 * 359.97438 * 18 8 7 33 33 H 1.08998 * 117.49499 * 144.97231 * 18 8 7 34 34 H 1.08996 * 117.50281 * 214.97057 * 19 2 1 35 35 H 1.09001 * 117.49901 * 359.97438 * 19 2 1 36 36 H 1.09003 * 117.49905 * 252.51559 * 20 19 2 37 37 H 1.08996 * 117.50436 * 107.49138 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2274 1.9192 -1.4069 5 8 1.6824 1.3114 -2.3038 6 7 2.8667 3.0765 -1.6685 7 6 2.8105 3.6569 -3.0124 8 6 3.7059 4.8961 -3.0706 9 6 3.2985 6.0352 -2.1721 10 1 3.7098 6.1114 -1.1764 11 6 2.4006 6.9803 -2.6212 12 7 2.0924 8.0081 -1.8608 13 14 1.6220 6.8009 -4.3097 14 1 2.4063 7.5794 -5.3017 15 1 1.6123 5.3682 -4.7006 16 1 0.2284 7.3122 -4.2691 17 6 5.2029 4.6759 -3.2975 18 6 4.3348 5.2505 -4.4197 19 6 2.2370 -1.1209 0.7647 20 6 2.2365 -1.1207 -0.7653 21 1 -0.3633 0.4252 -0.9355 22 1 -0.3633 -1.0229 0.0995 23 1 -0.3633 0.5976 0.8360 24 1 3.2065 1.2972 0.3844 25 1 1.6162 2.0573 0.6331 26 1 3.3640 3.5252 -0.9668 27 1 1.7835 3.9396 -3.2435 28 1 3.1578 2.9232 -3.7399 29 1 1.4610 8.6732 -2.1769 30 1 5.8931 5.3550 -2.7968 31 1 5.5498 3.6483 -3.4057 32 1 4.1110 4.6006 -5.2656 33 1 4.4534 6.3076 -4.6574 34 1 3.1721 -0.8750 1.2677 35 1 1.6120 -1.8584 1.2683 36 1 1.6113 -1.8582 -1.2685 37 1 3.1713 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404067520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:24 Heat of formation + Delta-G solvation = -18.552821 kcal Electronic energy + Delta-G solvation = -16984.345956 eV Core-core repulsion = 14341.057577 eV Total energy + Delta-G solvation = -2643.288379 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.88395 -39.06330 -38.10817 -34.90615 -34.21734 -30.89443 -29.24208 -28.09253 -26.69058 -23.36942 -23.24592 -21.57600 -21.11743 -19.81855 -18.45109 -17.69563 -16.99932 -16.82074 -16.38926 -15.76663 -15.45233 -15.02058 -14.79535 -14.59415 -14.16196 -13.94177 -13.67409 -13.19046 -13.10633 -12.85545 -12.62779 -12.31056 -12.21991 -12.08466 -11.95916 -11.58846 -11.20215 -10.97470 -10.86959 -10.69445 -10.50863 -10.23222 -9.82012 -8.30747 -6.36626 1.32164 1.38755 1.49218 1.79931 2.31427 2.35700 2.98611 3.05058 3.28668 3.74424 3.90112 3.99090 4.04346 4.14657 4.30580 4.35884 4.41344 4.53947 4.63665 4.73391 4.84181 4.84627 4.85687 4.98869 5.03457 5.08126 5.09982 5.20185 5.29225 5.31977 5.40982 5.47277 5.64469 5.70235 6.28167 6.70642 6.81132 7.33821 7.42640 8.83722 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032403 B = 0.006180 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.901382 B = 4529.850909 C = 4766.972147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.127 4.127 3 C -0.100 4.100 4 C 0.502 3.498 5 O -0.583 6.583 6 N -0.708 5.708 7 C 0.167 3.833 8 C -0.039 4.039 9 C -0.478 4.478 10 H 0.048 0.952 11 C 0.029 3.971 12 N -0.942 5.942 13 Si 0.926 3.074 14 H -0.269 1.269 15 H -0.242 1.242 16 H -0.301 1.301 17 C -0.152 4.152 18 C -0.193 4.193 19 C -0.151 4.151 20 C -0.172 4.172 21 H 0.037 0.963 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.114 0.886 25 H 0.109 0.891 26 H 0.410 0.590 27 H 0.033 0.967 28 H 0.052 0.948 29 H 0.264 0.736 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.849 -15.231 3.595 15.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.127 4.127 3 C -0.140 4.140 4 C 0.290 3.710 5 O -0.464 6.464 6 N -0.359 5.359 7 C 0.042 3.958 8 C -0.040 4.040 9 C -0.516 4.516 10 H 0.066 0.934 11 C -0.169 4.169 12 N -0.582 5.582 13 Si 0.752 3.248 14 H -0.195 1.195 15 H -0.165 1.165 16 H -0.229 1.229 17 C -0.189 4.189 18 C -0.231 4.231 19 C -0.187 4.187 20 C -0.209 4.209 21 H 0.056 0.944 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.132 0.868 25 H 0.127 0.873 26 H 0.245 0.755 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.107 0.893 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.351 -15.481 2.968 15.821 hybrid contribution -0.410 0.980 -0.593 1.216 sum 0.941 -14.502 2.375 14.725 Atomic orbital electron populations 1.21267 0.92070 1.02214 1.01206 1.21126 0.95051 0.89663 1.06900 1.21272 1.04089 0.96282 0.92320 1.21303 0.77412 0.80096 0.92146 1.90624 1.47266 1.59598 1.48880 1.45933 1.52921 1.23623 1.13393 1.20809 0.98234 0.92883 0.83866 1.19474 0.92946 0.94638 0.96939 1.20348 1.24805 1.06417 0.99996 0.93366 1.25658 0.96497 0.94419 1.00374 1.70005 1.35706 1.13017 1.39458 0.86076 0.77022 0.80305 0.81390 1.19485 1.16495 1.22873 1.22861 0.93345 1.01005 1.01714 1.23003 1.06777 1.00779 0.92536 1.23253 1.02429 0.99598 0.93460 1.22829 1.01873 1.01191 0.94974 0.94358 0.91406 0.91448 0.86791 0.87271 0.75480 0.94901 0.92951 0.92649 0.89524 0.88178 0.88578 0.90335 0.87418 0.87306 0.89303 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.59 9.68 71.98 0.70 -1.89 16 2 C -0.13 -2.98 1.60 -52.18 -0.08 -3.06 16 3 C -0.10 -2.46 5.66 29.85 0.17 -2.29 16 4 C 0.50 17.17 7.68 87.66 0.67 17.84 16 5 O -0.58 -23.86 15.02 -3.05 -0.05 -23.91 16 6 N -0.71 -25.50 5.46 -463.06 -2.53 -28.03 16 7 C 0.17 6.84 5.15 86.38 0.44 7.29 16 8 C -0.04 -1.65 0.85 -52.93 -0.04 -1.70 16 9 C -0.48 -25.01 9.10 25.60 0.23 -24.78 16 10 H 0.05 2.75 8.06 -2.91 -0.02 2.73 16 11 C 0.03 1.60 5.47 84.66 0.46 2.07 16 12 N -0.94 -56.64 13.96 21.45 0.30 -56.34 16 13 Si 0.93 43.96 24.95 68.60 1.71 45.67 16 14 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 15 H -0.24 -10.82 5.61 99.48 0.56 -10.27 16 16 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 17 C -0.15 -5.46 9.96 30.62 0.30 -5.15 16 18 C -0.19 -7.49 7.57 30.62 0.23 -7.26 16 19 C -0.15 -2.64 9.86 30.59 0.30 -2.34 16 20 C -0.17 -4.02 9.08 30.59 0.28 -3.75 16 21 H 0.04 1.11 7.74 -2.39 -0.02 1.09 16 22 H 0.07 1.34 8.09 -2.39 -0.02 1.32 16 23 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.11 2.21 7.93 -2.39 -0.02 2.19 16 25 H 0.11 2.47 8.12 -2.39 -0.02 2.45 16 26 H 0.41 13.71 8.28 -92.71 -0.77 12.94 16 27 H 0.03 1.52 6.62 -2.39 -0.02 1.50 16 28 H 0.05 2.07 8.07 -2.38 -0.02 2.05 16 29 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 31 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 33 H 0.08 3.23 7.28 -2.39 -0.02 3.22 16 34 H 0.11 1.58 8.07 -2.39 -0.02 1.56 16 35 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -64.78 304.42 3.23 -61.55 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.13 Total: 26.09 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 3.67 Total: -25.04 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -2.23 Total: -84.37 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.05 Total: -23.91 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.71 Total: 45.67 kcal Total: -64.78 3.23 -61.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404067520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.001 kcal (2) G-P(sol) polarization free energy of solvation -64.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds