Wall clock time and date at job start Mon Mar 30 2020 17:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34300 * 125.79042 * 2 1 4 4 C 1.34305 * 109.47485 * 180.23263 * 3 2 1 5 5 C 1.34511 * 108.42313 * 359.77077 * 4 3 2 6 6 C 1.34514 * 125.78777 * 179.82999 * 2 1 3 7 7 C 1.50703 * 126.58118 * 0.04195 * 6 2 1 8 8 N 1.46899 * 109.47107 * 79.70759 * 7 6 2 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46950 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47312 * 300.00123 * 10 9 8 12 12 C 1.52997 * 109.47169 * 60.00159 * 10 9 8 13 13 C 1.50698 * 109.47092 * 180.02562 * 10 9 8 14 14 H 1.08009 * 119.99873 * 0.02562 * 13 10 9 15 15 C 1.37879 * 120.00054 * 180.02562 * 13 10 9 16 16 N 1.31504 * 120.00303 * 359.97438 * 15 13 10 17 17 Si 1.86809 * 119.99645 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47069 * 60.00160 * 17 15 13 19 19 H 1.48500 * 109.46785 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47146 * 299.99864 * 17 15 13 21 21 H 1.09003 * 109.47513 * 270.16402 * 1 2 3 22 22 H 1.09004 * 109.47098 * 30.17221 * 1 2 3 23 23 H 1.09001 * 109.47245 * 150.16554 * 1 2 3 24 24 H 1.08003 * 125.78822 * 179.75276 * 4 3 2 25 25 H 1.08001 * 126.57953 * 179.97438 * 5 4 3 26 26 H 1.09002 * 109.47152 * 319.70846 * 7 6 2 27 27 H 1.09001 * 109.46980 * 199.70947 * 7 6 2 28 28 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 29 29 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 30 30 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 31 31 H 1.09002 * 109.47029 * 60.00405 * 11 10 9 32 32 H 1.09000 * 109.47152 * 180.02562 * 11 10 9 33 33 H 1.08993 * 109.47356 * 300.00089 * 11 10 9 34 34 H 1.09005 * 109.46874 * 60.00300 * 12 10 9 35 35 H 1.09000 * 109.47103 * 179.97438 * 12 10 9 36 36 H 1.09002 * 109.47446 * 299.99763 * 12 10 9 37 37 H 0.96998 * 120.00316 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0894 0.0000 4 6 3.5813 0.7121 -0.0051 5 6 3.6308 -0.6321 -0.0034 6 6 2.2936 -1.0912 0.0032 7 6 1.8371 -2.5274 0.0066 8 7 1.4538 -2.9226 -1.3553 9 6 1.0029 -4.3203 -1.3907 10 6 0.6138 -4.6944 -2.8223 11 6 -0.5178 -3.7813 -3.2985 12 6 1.8257 -4.5261 -3.7408 13 6 0.1507 -6.1280 -2.8585 14 1 0.1350 -6.7136 -1.9511 15 6 -0.2531 -6.6922 -4.0500 16 7 -0.2346 -5.9791 -5.1548 17 14 -0.8279 -8.4691 -4.0947 18 1 -2.0049 -8.6311 -3.2040 19 1 -1.2043 -8.8327 -5.4844 20 1 0.2694 -9.3560 -3.6314 21 1 -0.3634 0.0029 1.0277 22 1 -0.3633 0.8885 -0.5165 23 1 -0.3634 -0.8915 -0.5113 24 1 4.4336 1.3755 -0.0102 25 1 4.5212 -1.2434 -0.0068 26 1 0.9796 -2.6346 0.6710 27 1 2.6489 -3.1658 0.3553 28 1 0.7472 -2.3048 -1.7258 29 1 1.8092 -4.9708 -1.0519 30 1 0.1397 -4.4402 -0.7359 31 1 -0.1832 -2.7442 -3.2722 32 1 -0.7953 -4.0482 -4.3182 33 1 -1.3812 -3.9012 -2.6442 34 1 2.6318 -5.1768 -3.4015 35 1 1.5486 -4.7931 -4.7606 36 1 2.1603 -3.4891 -3.7146 37 1 -0.5190 -6.3759 -5.9930 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414459794.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:48 Heat of formation + Delta-G solvation = 4.106222 kcal Electronic energy + Delta-G solvation = -17002.072331 eV Core-core repulsion = 14359.766522 eV Total energy + Delta-G solvation = -2642.305810 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.44928 -37.04221 -34.72507 -32.49612 -31.76111 -30.57309 -27.11608 -25.54604 -25.25379 -25.01946 -22.87411 -21.32946 -19.49171 -18.41429 -16.92598 -16.07411 -15.80258 -15.13854 -14.68164 -14.32821 -13.85731 -13.36695 -13.08904 -12.95978 -12.62516 -12.43007 -12.27821 -12.03624 -11.79571 -11.23741 -11.07255 -10.93009 -10.63370 -10.57678 -10.15194 -10.04858 -9.59647 -9.35611 -9.05348 -8.61098 -8.27587 -8.22877 -7.63932 -5.88912 -3.99478 1.83746 2.72374 3.11687 3.34063 3.38891 3.41463 4.45963 4.80212 4.96038 5.04228 5.21808 5.32743 5.36341 5.45785 5.63898 5.72064 5.90913 5.96465 6.19003 6.31677 6.37133 6.45298 6.67223 6.74022 6.91130 7.10282 7.18884 7.26162 7.42236 7.50464 7.76166 7.78083 7.86089 8.00890 8.23597 8.37238 8.58171 9.01808 9.65361 11.11575 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.048988 B = 0.005016 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.432998 B = 5580.950012 C = 5659.767867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.016 4.016 3 O -0.180 6.180 4 C -0.056 4.056 5 C -0.191 4.191 6 C -0.163 4.163 7 C 0.125 3.875 8 N -0.681 5.681 9 C 0.074 3.926 10 C 0.069 3.931 11 C -0.132 4.132 12 C -0.119 4.119 13 C -0.507 4.507 14 H 0.051 0.949 15 C 0.065 3.935 16 N -0.885 5.885 17 Si 0.889 3.111 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.278 1.278 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.199 0.801 25 H 0.146 0.854 26 H 0.029 0.971 27 H 0.075 0.925 28 H 0.336 0.664 29 H 0.056 0.944 30 H 0.013 0.987 31 H 0.010 0.990 32 H 0.083 0.917 33 H 0.019 0.981 34 H 0.018 0.982 35 H 0.074 0.926 36 H 0.020 0.980 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.450 11.214 9.314 14.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.067 4.067 3 O -0.077 6.077 4 C -0.123 4.123 5 C -0.210 4.210 6 C -0.164 4.164 7 C -0.004 4.004 8 N -0.313 5.313 9 C -0.054 4.054 10 C 0.068 3.932 11 C -0.190 4.190 12 C -0.177 4.177 13 C -0.546 4.546 14 H 0.069 0.931 15 C -0.135 4.135 16 N -0.524 5.524 17 Si 0.717 3.283 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.204 1.204 21 H 0.096 0.904 22 H 0.094 0.906 23 H 0.105 0.895 24 H 0.216 0.784 25 H 0.164 0.836 26 H 0.047 0.953 27 H 0.093 0.907 28 H 0.155 0.845 29 H 0.075 0.925 30 H 0.031 0.969 31 H 0.029 0.971 32 H 0.102 0.898 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.092 0.908 36 H 0.039 0.961 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.935 11.314 8.925 14.938 hybrid contribution -0.880 -1.113 0.384 1.470 sum 3.054 10.200 9.309 14.143 Atomic orbital electron populations 1.20292 0.85395 1.04116 1.03176 1.22229 0.93809 0.83956 1.06715 1.83968 1.16844 1.34890 1.71989 1.23862 0.84234 0.95992 1.08213 1.21703 0.97841 0.94527 1.06972 1.20237 0.92902 0.95838 1.07456 1.20233 0.99015 0.89797 0.91351 1.60632 1.46906 1.05103 1.18691 1.22182 0.96656 0.86424 1.00109 1.18087 0.92478 0.94124 0.88491 1.21837 0.97997 0.95311 1.03872 1.21638 0.96620 0.96776 1.02652 1.21074 1.43240 0.96273 0.93985 0.93059 1.24882 0.95583 0.97377 0.95702 1.69821 1.47935 1.35757 0.98850 0.86722 0.79101 0.85623 0.76863 1.20482 1.21373 1.20412 0.90394 0.90550 0.89470 0.78422 0.83611 0.95282 0.90698 0.84473 0.92504 0.96882 0.97106 0.89806 0.96213 0.96328 0.90767 0.96100 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.21 36.00 0.37 -0.45 16 2 C -0.02 -0.23 7.32 -35.63 -0.26 -0.49 16 3 O -0.18 -2.48 10.65 5.71 0.06 -2.42 16 4 C -0.06 -0.67 12.09 29.41 0.36 -0.31 16 5 C -0.19 -2.59 10.87 -39.70 -0.43 -3.02 16 6 C -0.16 -2.42 5.68 -104.74 -0.59 -3.02 16 7 C 0.13 1.97 5.70 -4.98 -0.03 1.94 16 8 N -0.68 -12.61 5.70 -115.05 -0.66 -13.27 16 9 C 0.07 1.57 4.59 -3.82 -0.02 1.56 16 10 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 11 C -0.13 -3.14 7.92 37.16 0.29 -2.85 16 12 C -0.12 -2.97 8.09 37.16 0.30 -2.67 16 13 C -0.51 -13.71 8.01 -34.44 -0.28 -13.99 16 14 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 15 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 16 N -0.88 -24.64 9.35 55.43 0.52 -24.12 16 17 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.09 1.01 7.00 -51.93 -0.36 0.65 16 24 H 0.20 1.54 8.06 -52.48 -0.42 1.12 16 25 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.34 6.15 5.90 -39.29 -0.23 5.92 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 32 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 2.01 6.07 -51.93 -0.32 1.70 16 36 H 0.02 0.48 7.60 -51.93 -0.39 0.08 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 299.26 15.07 4.51 4.51 Total: -1.00 -28.95 299.26 -6.79 -35.74 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.73 Total: 3.42 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -0.47 Total: -20.01 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: -0.14 Total: -37.38 kcal Atomic # 8 Polarization: -2.48 SS G_CDS: 0.06 Total: -2.42 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.95 -6.79 -35.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414459794.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.847 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds