Wall clock time and date at job start Mon Mar 30 2020 17:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34300 * 125.79042 * 2 1 4 4 C 1.34305 * 109.47485 * 180.23263 * 3 2 1 5 5 C 1.34511 * 108.42313 * 359.77077 * 4 3 2 6 6 C 1.34514 * 125.78777 * 179.82999 * 2 1 3 7 7 C 1.50703 * 126.58118 * 0.04195 * 6 2 1 8 8 N 1.46899 * 109.47107 * 79.70759 * 7 6 2 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46950 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47312 * 300.00123 * 10 9 8 12 12 C 1.52997 * 109.47169 * 60.00159 * 10 9 8 13 13 C 1.50698 * 109.47092 * 180.02562 * 10 9 8 14 14 H 1.08009 * 119.99873 * 0.02562 * 13 10 9 15 15 C 1.37879 * 120.00054 * 180.02562 * 13 10 9 16 16 N 1.31504 * 120.00303 * 359.97438 * 15 13 10 17 17 Si 1.86809 * 119.99645 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47069 * 60.00160 * 17 15 13 19 19 H 1.48500 * 109.46785 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47146 * 299.99864 * 17 15 13 21 21 H 1.09003 * 109.47513 * 270.16402 * 1 2 3 22 22 H 1.09004 * 109.47098 * 30.17221 * 1 2 3 23 23 H 1.09001 * 109.47245 * 150.16554 * 1 2 3 24 24 H 1.08003 * 125.78822 * 179.75276 * 4 3 2 25 25 H 1.08001 * 126.57953 * 179.97438 * 5 4 3 26 26 H 1.09002 * 109.47152 * 319.70846 * 7 6 2 27 27 H 1.09001 * 109.46980 * 199.70947 * 7 6 2 28 28 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 29 29 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 30 30 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 31 31 H 1.09002 * 109.47029 * 60.00405 * 11 10 9 32 32 H 1.09000 * 109.47152 * 180.02562 * 11 10 9 33 33 H 1.08993 * 109.47356 * 300.00089 * 11 10 9 34 34 H 1.09005 * 109.46874 * 60.00300 * 12 10 9 35 35 H 1.09000 * 109.47103 * 179.97438 * 12 10 9 36 36 H 1.09002 * 109.47446 * 299.99763 * 12 10 9 37 37 H 0.96998 * 120.00316 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0894 0.0000 4 6 3.5813 0.7121 -0.0051 5 6 3.6308 -0.6321 -0.0034 6 6 2.2936 -1.0912 0.0032 7 6 1.8371 -2.5274 0.0066 8 7 1.4538 -2.9226 -1.3553 9 6 1.0029 -4.3203 -1.3907 10 6 0.6138 -4.6944 -2.8223 11 6 -0.5178 -3.7813 -3.2985 12 6 1.8257 -4.5261 -3.7408 13 6 0.1507 -6.1280 -2.8585 14 1 0.1350 -6.7136 -1.9511 15 6 -0.2531 -6.6922 -4.0500 16 7 -0.2346 -5.9791 -5.1548 17 14 -0.8279 -8.4691 -4.0947 18 1 -2.0049 -8.6311 -3.2040 19 1 -1.2043 -8.8327 -5.4844 20 1 0.2694 -9.3560 -3.6314 21 1 -0.3634 0.0029 1.0277 22 1 -0.3633 0.8885 -0.5165 23 1 -0.3634 -0.8915 -0.5113 24 1 4.4336 1.3755 -0.0102 25 1 4.5212 -1.2434 -0.0068 26 1 0.9796 -2.6346 0.6710 27 1 2.6489 -3.1658 0.3553 28 1 0.7472 -2.3048 -1.7258 29 1 1.8092 -4.9708 -1.0519 30 1 0.1397 -4.4402 -0.7359 31 1 -0.1832 -2.7442 -3.2722 32 1 -0.7953 -4.0482 -4.3182 33 1 -1.3812 -3.9012 -2.6442 34 1 2.6318 -5.1768 -3.4015 35 1 1.5486 -4.7931 -4.7606 36 1 2.1603 -3.4891 -3.7146 37 1 -0.5190 -6.3759 -5.9930 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414459794.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:48 Heat of formation + Delta-G solvation = -12.570303 kcal Electronic energy + Delta-G solvation = -17002.795480 eV Core-core repulsion = 14359.766522 eV Total energy + Delta-G solvation = -2643.028958 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.45370 -38.73441 -36.23698 -34.02207 -32.73104 -32.27976 -28.29035 -27.50265 -27.23749 -26.38358 -24.43287 -22.33961 -20.57782 -20.27068 -18.10281 -17.70497 -17.07648 -16.79350 -16.29349 -15.53769 -15.42784 -14.82746 -14.37479 -14.22877 -13.90508 -13.76584 -13.58865 -13.39382 -13.19146 -12.98841 -12.89615 -12.56507 -12.38972 -12.28280 -12.08016 -12.05215 -11.30515 -11.00787 -10.63497 -10.56189 -10.32862 -9.29639 -9.07412 -7.95072 -6.12255 0.84801 1.45021 1.45771 1.52605 1.68053 2.19077 2.48106 3.26971 3.61166 3.91271 4.00555 4.03472 4.40771 4.53441 4.57464 4.66372 4.68512 4.72625 4.87895 4.88364 4.96803 5.04040 5.17987 5.18869 5.29187 5.39709 5.43507 5.53944 5.65031 5.71073 5.77326 6.16660 6.24556 6.27730 6.34564 6.49905 6.63846 6.96979 7.55322 9.03041 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.048988 B = 0.005016 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.432998 B = 5580.950012 C = 5659.767867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 O -0.188 6.188 4 C -0.045 4.045 5 C -0.216 4.216 6 C -0.188 4.188 7 C 0.131 3.869 8 N -0.684 5.684 9 C 0.089 3.911 10 C 0.059 3.941 11 C -0.121 4.121 12 C -0.105 4.105 13 C -0.527 4.527 14 H 0.046 0.954 15 C 0.022 3.978 16 N -0.904 5.904 17 Si 0.945 3.055 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.276 1.276 21 H 0.095 0.905 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.239 0.761 25 H 0.154 0.846 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.337 0.663 29 H 0.049 0.951 30 H 0.014 0.986 31 H 0.031 0.969 32 H 0.056 0.944 33 H 0.020 0.980 34 H 0.010 0.990 35 H 0.049 0.951 36 H 0.030 0.970 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.565 12.068 10.206 16.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.074 4.074 3 O -0.085 6.085 4 C -0.111 4.111 5 C -0.235 4.235 6 C -0.189 4.189 7 C 0.002 3.998 8 N -0.317 5.317 9 C -0.040 4.040 10 C 0.058 3.942 11 C -0.179 4.179 12 C -0.163 4.163 13 C -0.565 4.565 14 H 0.064 0.936 15 C -0.177 4.177 16 N -0.543 5.543 17 Si 0.772 3.228 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.202 1.202 21 H 0.114 0.886 22 H 0.108 0.892 23 H 0.098 0.902 24 H 0.255 0.745 25 H 0.172 0.828 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.157 0.843 29 H 0.067 0.933 30 H 0.032 0.968 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.029 0.971 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.052 12.174 9.829 16.163 hybrid contribution -0.868 -1.321 0.123 1.585 sum 3.184 10.853 9.952 15.065 Atomic orbital electron populations 1.20389 0.83834 1.04383 1.04434 1.22647 0.94919 0.83774 1.06020 1.83990 1.17627 1.34943 1.71956 1.24616 0.84468 0.96160 1.05847 1.21948 0.97720 0.95601 1.08251 1.20279 0.93984 0.95440 1.09224 1.20173 0.99199 0.90625 0.89796 1.60553 1.46616 1.03666 1.20832 1.21848 0.96349 0.87967 0.97796 1.18148 0.92338 0.93291 0.90385 1.21661 0.97844 0.96336 1.02018 1.21473 0.96612 0.97012 1.01235 1.21400 1.43505 0.97738 0.93896 0.93579 1.25542 0.95810 1.00818 0.95502 1.69958 1.48300 1.36981 0.99077 0.85821 0.78683 0.81470 0.76834 1.19969 1.21155 1.20198 0.88631 0.89232 0.90176 0.74514 0.82826 0.94373 0.90897 0.84314 0.93270 0.96831 0.95045 0.92560 0.96066 0.97125 0.93255 0.95096 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.50 10.21 71.24 0.73 -0.77 16 2 C -0.02 -0.60 7.32 24.83 0.18 -0.42 16 3 O -0.19 -4.76 10.65 -2.47 -0.03 -4.79 16 4 C -0.04 -0.95 12.09 66.97 0.81 -0.14 16 5 C -0.22 -5.49 10.87 22.19 0.24 -5.25 16 6 C -0.19 -5.33 5.68 -19.94 -0.11 -5.44 16 7 C 0.13 3.97 5.70 85.56 0.49 4.46 16 8 N -0.68 -24.61 5.70 -517.92 -2.95 -27.56 16 9 C 0.09 3.71 4.59 86.30 0.40 4.11 16 10 C 0.06 2.87 0.57 -52.93 -0.03 2.84 16 11 C -0.12 -5.68 7.92 71.98 0.57 -5.11 16 12 C -0.11 -5.27 8.09 71.98 0.58 -4.68 16 13 C -0.53 -28.50 8.01 25.60 0.21 -28.29 16 14 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 15 C 0.02 1.21 5.15 84.66 0.44 1.65 16 16 N -0.90 -50.72 9.35 21.45 0.20 -50.52 16 17 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 23 H 0.08 1.74 7.00 -2.39 -0.02 1.72 16 24 H 0.24 2.81 8.06 -2.91 -0.02 2.79 16 25 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 26 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.34 11.92 5.90 -89.69 -0.53 11.39 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.03 1.30 6.57 -2.39 -0.02 1.29 16 32 H 0.06 2.97 6.07 -2.39 -0.01 2.95 16 33 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.05 2.70 6.07 -2.39 -0.01 2.68 16 36 H 0.03 1.43 7.60 -2.39 -0.02 1.41 16 37 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -60.72 299.26 4.26 -56.46 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.52 Total: 18.12 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 4.49 Total: -37.06 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -2.75 Total: -78.08 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.03 Total: -4.79 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -60.72 4.26 -56.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414459794.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.887 kcal (2) G-P(sol) polarization free energy of solvation -60.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds