Wall clock time and date at job start Mon Mar 30 2020 17:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.64348 * 2 1 4 4 C 1.34777 * 119.99858 * 300.00156 * 3 2 1 5 5 O 1.21283 * 119.99750 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00104 * 179.97438 * 4 3 2 7 7 C 1.53004 * 109.47175 * 179.97438 * 6 4 3 8 8 C 1.50699 * 109.46843 * 180.02562 * 7 6 4 9 9 H 1.08002 * 120.00516 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99783 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99707 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99956 * 180.27458 * 10 8 7 13 13 H 1.48497 * 109.47172 * 179.72730 * 12 10 8 14 14 H 1.48506 * 109.47132 * 299.72429 * 12 10 8 15 15 H 1.48501 * 109.47173 * 59.72550 * 12 10 8 16 16 C 1.53032 * 109.64300 * 239.57542 * 2 1 3 17 17 C 1.50072 * 110.14584 * 190.66644 * 16 2 1 18 18 C 1.29444 * 124.07389 * 17.13684 * 17 16 2 19 19 C 1.50065 * 124.07934 * 359.50413 * 18 17 16 20 20 C 1.53396 * 109.63877 * 120.42168 * 2 1 3 21 21 H 1.09005 * 109.46779 * 60.00514 * 1 2 3 22 22 H 1.09003 * 109.46913 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47166 * 300.00366 * 1 2 3 24 24 H 0.96990 * 119.99827 * 119.99929 * 3 2 1 25 25 H 1.09006 * 109.46887 * 59.99757 * 6 4 3 26 26 H 1.08997 * 109.46876 * 299.99806 * 6 4 3 27 27 H 1.09001 * 109.46361 * 60.00344 * 7 6 4 28 28 H 1.08997 * 109.46991 * 300.00234 * 7 6 4 29 29 H 0.97005 * 119.99656 * 179.97438 * 11 10 8 30 30 H 1.08996 * 109.35865 * 310.87957 * 16 2 1 31 31 H 1.08998 * 109.35370 * 70.46466 * 16 2 1 32 32 H 1.07997 * 117.95937 * 197.15413 * 17 16 2 33 33 H 1.07997 * 117.95838 * 179.52844 * 18 17 16 34 34 H 1.09000 * 109.36068 * 137.35538 * 19 18 17 35 35 H 1.08997 * 109.36063 * 257.08384 * 19 18 17 36 36 H 1.08998 * 109.64084 * 307.01296 * 20 2 1 37 37 H 1.08996 * 109.64312 * 67.64738 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0225 1.3798 0.0000 4 6 1.6993 2.2106 -1.0108 5 8 1.0012 1.8158 -1.9206 6 6 2.2054 3.6300 -1.0106 7 6 1.6981 4.3526 -2.2602 8 6 2.2048 5.7718 -2.2602 9 1 2.8261 6.1235 -1.4498 10 6 1.8743 6.6218 -3.2944 11 7 1.1165 6.1940 -4.2805 12 14 2.5086 8.3788 -3.2984 13 1 2.0201 9.0787 -4.5136 14 1 2.0163 9.0855 -2.0886 15 1 3.9936 8.3690 -3.2960 16 6 2.0444 -0.7299 -1.2428 17 6 3.5221 -0.9655 -1.1291 18 6 4.1844 -0.8956 -0.0192 19 6 3.5691 -0.5587 1.3074 20 6 2.0455 -0.7316 1.2458 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 2.5810 1.6953 0.7274 25 1 3.2955 3.6271 -1.0103 26 1 1.8432 4.1447 -0.1207 27 1 0.6081 4.3554 -2.2608 28 1 2.0607 3.8377 -3.1499 29 1 0.8837 6.7921 -5.0079 30 1 1.5320 -1.6872 -1.3376 31 1 1.8420 -0.1250 -2.1266 32 1 4.0669 -1.2083 -2.0295 33 1 5.2460 -1.0916 -0.0498 34 1 3.9762 -1.2193 2.0728 35 1 3.8019 0.4754 1.5615 36 1 1.5866 -0.3046 2.1375 37 1 1.8010 -1.7914 1.1758 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458356821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:31 Heat of formation + Delta-G solvation = -43.946819 kcal Electronic energy + Delta-G solvation = -17136.327781 eV Core-core repulsion = 14491.938235 eV Total energy + Delta-G solvation = -2644.389546 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24976 -37.68041 -33.76095 -33.38385 -31.60396 -30.84829 -30.30275 -26.53719 -25.63390 -23.28872 -22.17703 -20.42968 -19.55698 -17.70958 -16.95438 -16.07049 -15.66488 -14.87360 -14.72819 -14.39066 -14.10089 -13.75470 -13.27297 -13.03747 -12.55135 -12.42866 -12.19987 -12.14135 -11.82823 -11.59122 -11.48651 -11.11657 -10.88467 -10.59219 -10.41845 -10.31903 -9.89991 -9.58635 -9.11719 -9.00919 -8.73131 -8.62241 -8.28683 -5.93316 -3.97448 2.33854 3.35333 3.36291 3.40581 3.42242 3.63748 4.49830 4.58027 4.66164 4.86505 5.13716 5.31569 5.32205 5.35171 5.41508 5.64626 5.67170 5.70674 5.82646 5.84427 5.95415 6.00831 6.16432 6.23491 6.28666 6.33939 6.48290 6.68859 6.95130 6.96552 7.01455 7.77413 7.91023 8.03838 8.10931 8.42814 8.90298 9.11489 9.65794 11.17598 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041188 B = 0.005149 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.640684 B = 5436.669240 C = 5611.039358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.178 3.822 3 N -0.732 5.732 4 C 0.513 3.487 5 O -0.533 6.533 6 C -0.131 4.131 7 C 0.039 3.961 8 C -0.527 4.527 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.890 5.890 12 Si 0.892 3.108 13 H -0.287 1.287 14 H -0.277 1.277 15 H -0.277 1.277 16 C -0.108 4.108 17 C -0.137 4.137 18 C -0.170 4.170 19 C -0.088 4.088 20 C -0.121 4.121 21 H 0.082 0.918 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.394 0.606 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.261 0.739 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.692 -14.808 12.126 19.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.092 3.908 3 N -0.386 5.386 4 C 0.302 3.698 5 O -0.409 6.409 6 C -0.171 4.171 7 C 0.001 3.999 8 C -0.566 4.566 9 H 0.073 0.927 10 C -0.143 4.143 11 N -0.529 5.529 12 Si 0.720 3.280 13 H -0.213 1.213 14 H -0.203 1.203 15 H -0.203 1.203 16 C -0.146 4.146 17 C -0.155 4.155 18 C -0.188 4.188 19 C -0.125 4.125 20 C -0.159 4.159 21 H 0.101 0.899 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.229 0.771 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.096 -15.036 11.274 19.047 hybrid contribution 0.754 1.108 0.270 1.367 sum 3.851 -13.928 11.544 18.496 Atomic orbital electron populations 1.22209 0.94378 1.01820 1.03745 1.20212 0.93766 0.82120 0.94752 1.46299 1.54773 1.11308 1.26216 1.21426 0.79357 0.88321 0.80711 1.90588 1.37309 1.77278 1.35706 1.21864 1.01287 0.90096 1.03900 1.18868 0.97036 0.93523 0.90424 1.21205 1.31803 0.96495 1.07048 0.92746 1.25018 0.95193 0.98548 0.95578 1.69991 1.36538 1.35843 1.10518 0.86663 0.79170 0.84812 0.77337 1.21290 1.20278 1.20277 1.20954 0.92823 1.00547 1.00240 1.22068 0.96397 0.99407 0.97597 1.21893 0.99317 1.03064 0.94519 1.20458 0.94785 1.01506 0.95758 1.21988 0.95596 1.01003 0.97329 0.89885 0.92403 0.92764 0.77139 0.90508 0.90496 0.95875 0.95892 0.92938 0.90556 0.88301 0.88239 0.88284 0.91140 0.91045 0.91085 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 8.41 37.16 0.31 -1.85 16 2 C 0.18 2.27 0.67 -131.60 -0.09 2.18 16 3 N -0.73 -10.48 4.59 -47.40 -0.22 -10.70 16 4 C 0.51 9.82 7.22 -10.99 -0.08 9.74 16 5 O -0.53 -12.08 12.22 5.55 0.07 -12.01 16 6 C -0.13 -2.71 5.64 -27.88 -0.16 -2.87 16 7 C 0.04 1.06 4.26 -27.88 -0.12 0.94 16 8 C -0.53 -15.13 9.11 -34.44 -0.31 -15.45 16 9 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -27.67 13.29 55.43 0.74 -26.93 16 12 Si 0.89 21.86 29.54 -169.99 -5.02 16.83 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 C -0.11 -1.47 4.82 -28.17 -0.14 -1.61 16 17 C -0.14 -1.70 9.68 -35.90 -0.35 -2.05 16 18 C -0.17 -1.85 9.74 -35.90 -0.35 -2.20 16 19 C -0.09 -0.81 5.68 -27.95 -0.16 -0.97 16 20 C -0.12 -1.16 5.05 -26.29 -0.13 -1.30 16 21 H 0.08 1.38 6.18 -51.93 -0.32 1.06 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.39 4.68 6.95 -40.82 -0.28 4.40 16 25 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 26 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 31 H 0.10 1.70 5.99 -51.93 -0.31 1.39 16 32 H 0.10 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.63 6.78 -51.93 -0.35 0.28 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 LS Contribution 296.03 15.07 4.46 4.46 Total: -1.00 -32.73 296.03 -7.51 -40.24 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.88 Total: 1.91 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -1.67 Total: -13.81 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.52 Total: -37.63 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.07 Total: -12.01 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.73 -7.51 -40.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458356821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.705 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds