Wall clock time and date at job start Mon Mar 30 2020 17:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.41376 * 126.58081 * 2 1 4 4 C 1.34511 * 106.84221 * 179.97438 * 3 2 1 5 5 O 1.34299 * 108.41821 * 359.73792 * 4 3 2 6 6 C 1.34302 * 109.47987 * 0.43836 * 5 4 3 7 7 C 1.50697 * 125.79289 * 179.82547 * 6 5 4 8 8 N 1.46905 * 109.47066 * 269.69021 * 7 6 5 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46916 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46923 * 299.99733 * 10 9 8 12 12 C 1.52999 * 109.46998 * 59.99872 * 10 9 8 13 13 C 1.50703 * 109.46807 * 179.97438 * 10 9 8 14 14 H 1.07995 * 120.00107 * 359.97438 * 13 10 9 15 15 C 1.37878 * 119.99714 * 179.97438 * 13 10 9 16 16 N 1.31510 * 119.99944 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 119.99765 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47110 * 90.00207 * 17 15 13 19 19 H 1.48501 * 109.47137 * 210.00199 * 17 15 13 20 20 H 1.48496 * 109.47323 * 330.00240 * 17 15 13 21 21 H 1.08997 * 109.47016 * 270.03795 * 1 2 3 22 22 H 1.08998 * 109.46621 * 30.04232 * 1 2 3 23 23 H 1.09002 * 109.46883 * 150.03881 * 1 2 3 24 24 H 1.08001 * 126.57814 * 359.97438 * 3 2 1 25 25 H 1.08001 * 125.78616 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.47558 * 149.69185 * 7 6 5 27 27 H 1.08998 * 109.47216 * 29.68847 * 7 6 5 28 28 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 29 29 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 30 30 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 31 31 H 1.09002 * 109.47301 * 60.00027 * 11 10 9 32 32 H 1.09001 * 109.47017 * 180.02562 * 11 10 9 33 33 H 1.09005 * 109.47249 * 300.00302 * 11 10 9 34 34 H 1.09001 * 109.46999 * 60.00126 * 12 10 9 35 35 H 1.09001 * 109.46478 * 179.97438 * 12 10 9 36 36 H 1.08993 * 109.47197 * 299.99817 * 12 10 9 37 37 H 0.97007 * 120.00038 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6157 0.6810 0.0006 5 8 3.5848 -0.6616 0.0068 6 6 2.3087 -1.0802 0.0005 7 6 1.8522 -2.5164 0.0006 8 7 1.7044 -2.9834 -1.3844 9 6 1.2590 -4.3827 -1.4234 10 6 1.1174 -4.8324 -2.8790 11 6 0.0881 -3.9496 -3.5876 12 6 2.4689 -4.7074 -3.5851 13 6 0.6611 -6.2681 -2.9190 14 1 0.4897 -6.8061 -1.9984 15 6 0.4625 -6.8948 -4.1310 16 7 0.6717 -6.2397 -5.2520 17 14 -0.1025 -8.6746 -4.1806 18 1 -1.5866 -8.7227 -4.1941 19 1 0.4251 -9.3274 -5.4056 20 1 0.4050 -9.3887 -2.9815 21 1 -0.3633 0.0007 1.0276 22 1 -0.3632 0.8896 -0.5145 23 1 -0.3633 -0.8904 -0.5132 24 1 2.0367 2.1690 -0.0004 25 1 4.5060 1.2923 0.0011 26 1 0.8938 -2.5931 0.5141 27 1 2.5901 -3.1321 0.5148 28 1 2.5630 -2.8623 -1.9003 29 1 1.9925 -5.0117 -0.9189 30 1 0.2964 -4.4718 -0.9199 31 1 0.4185 -2.9113 -3.5586 32 1 -0.0131 -4.2703 -4.6244 33 1 -0.8748 -4.0386 -3.0844 34 1 3.2022 -5.3363 -3.0802 35 1 2.3680 -5.0282 -4.6220 36 1 2.7993 -3.6692 -3.5561 37 1 0.5323 -6.6807 -6.1047 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459727348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:35 Heat of formation + Delta-G solvation = -12.570937 kcal Electronic energy + Delta-G solvation = -16981.656976 eV Core-core repulsion = 14338.627991 eV Total energy + Delta-G solvation = -2643.028985 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.45149 -38.70686 -35.96478 -34.81433 -33.08982 -31.04637 -28.72252 -27.51123 -27.23842 -26.34077 -24.43250 -22.25720 -20.67508 -20.28399 -18.12560 -17.68219 -17.08239 -16.83959 -16.35272 -15.62392 -15.41044 -14.74137 -14.27740 -14.15907 -13.88782 -13.80515 -13.59169 -13.27789 -13.22245 -13.01030 -12.85031 -12.53972 -12.50416 -12.24859 -12.08546 -12.05654 -11.31220 -10.99781 -10.60088 -10.46429 -10.33571 -9.38824 -9.13577 -7.95386 -6.12481 0.82101 1.44001 1.46025 1.54258 1.71702 2.16544 2.48128 3.26982 3.52467 3.83435 4.05592 4.12261 4.35844 4.49226 4.61301 4.63974 4.71630 4.86800 4.86976 4.95351 5.01018 5.03774 5.17021 5.28015 5.29386 5.36645 5.43725 5.53876 5.71034 5.73742 5.76955 6.10647 6.19862 6.27993 6.33423 6.45651 6.56387 6.96732 7.55234 9.02966 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.048080 B = 0.005023 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.217134 B = 5572.544893 C = 5663.579332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.170 4.170 3 C -0.227 4.227 4 C -0.040 4.040 5 O -0.197 6.197 6 C -0.037 4.037 7 C 0.143 3.857 8 N -0.682 5.682 9 C 0.089 3.911 10 C 0.059 3.941 11 C -0.105 4.105 12 C -0.122 4.122 13 C -0.525 4.525 14 H 0.048 0.952 15 C 0.022 3.978 16 N -0.905 5.905 17 Si 0.946 3.054 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.272 1.272 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.060 0.940 24 H 0.168 0.832 25 H 0.238 0.762 26 H 0.105 0.895 27 H 0.042 0.958 28 H 0.338 0.662 29 H 0.014 0.986 30 H 0.058 0.942 31 H 0.031 0.969 32 H 0.047 0.953 33 H 0.014 0.986 34 H 0.017 0.983 35 H 0.056 0.944 36 H 0.029 0.971 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.134 12.543 10.277 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.173 4.173 3 C -0.246 4.246 4 C -0.107 4.107 5 O -0.094 6.094 6 C -0.086 4.086 7 C 0.014 3.986 8 N -0.314 5.314 9 C -0.039 4.039 10 C 0.059 3.941 11 C -0.163 4.163 12 C -0.180 4.180 13 C -0.564 4.564 14 H 0.066 0.934 15 C -0.177 4.177 16 N -0.544 5.544 17 Si 0.773 3.227 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.197 1.197 21 H 0.095 0.905 22 H 0.092 0.908 23 H 0.079 0.921 24 H 0.186 0.814 25 H 0.254 0.746 26 H 0.123 0.877 27 H 0.060 0.940 28 H 0.157 0.843 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.033 0.967 34 H 0.037 0.963 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.730 12.554 10.025 16.296 hybrid contribution 0.462 -1.357 -0.076 1.435 sum 3.192 11.198 9.948 15.315 Atomic orbital electron populations 1.20209 0.88381 1.02923 1.02405 1.20575 0.98095 0.92227 1.06363 1.22056 0.92716 1.00469 1.09311 1.24748 1.01090 0.79968 1.04940 1.83988 1.29260 1.24185 1.71943 1.22249 0.80984 0.96744 1.08648 1.20299 1.00692 0.86392 0.91212 1.60609 1.37472 1.21559 1.11749 1.21883 0.98082 0.85613 0.98371 1.18149 0.92634 0.93188 0.90145 1.21469 0.97093 0.96689 1.01070 1.21681 0.97109 0.96756 1.02470 1.21423 1.45156 0.97680 0.92109 0.93406 1.25549 0.95601 1.01031 0.95561 1.69975 1.49758 1.37219 0.97426 0.85752 0.78380 0.81311 0.77296 1.20496 1.21228 1.19687 0.90518 0.90788 0.92124 0.81430 0.74616 0.87667 0.93988 0.84341 0.96819 0.92304 0.95013 0.93362 0.96708 0.96341 0.92507 0.95209 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 9.99 71.24 0.71 -1.20 16 2 C -0.17 -4.55 6.16 -19.94 -0.12 -4.68 16 3 C -0.23 -5.06 10.87 22.19 0.24 -4.82 16 4 C -0.04 -0.86 12.09 66.97 0.81 -0.05 16 5 O -0.20 -5.58 10.65 -2.44 -0.03 -5.61 16 6 C -0.04 -1.08 6.83 24.83 0.17 -0.91 16 7 C 0.14 4.27 5.84 85.55 0.50 4.77 16 8 N -0.68 -24.30 5.70 -517.92 -2.95 -27.25 16 9 C 0.09 3.63 4.59 86.30 0.40 4.03 16 10 C 0.06 2.87 0.57 -52.93 -0.03 2.84 16 11 C -0.11 -5.17 8.09 71.98 0.58 -4.58 16 12 C -0.12 -5.85 7.92 71.98 0.57 -5.28 16 13 C -0.52 -28.20 8.01 25.60 0.21 -27.99 16 14 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 15 C 0.02 1.17 5.15 84.66 0.44 1.60 16 16 N -0.90 -50.71 9.35 21.45 0.20 -50.51 16 17 Si 0.95 43.24 29.54 68.60 2.03 45.27 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 21 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.06 1.60 7.78 -2.39 -0.02 1.59 16 24 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 25 H 0.24 2.77 8.06 -2.91 -0.02 2.75 16 26 H 0.11 2.91 7.76 -2.39 -0.02 2.89 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.34 12.41 6.76 -89.69 -0.61 11.80 16 29 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.03 1.43 7.60 -2.39 -0.02 1.42 16 32 H 0.05 2.61 6.07 -2.39 -0.01 2.60 16 33 H 0.01 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 36 H 0.03 1.27 6.57 -2.39 -0.02 1.25 16 37 H 0.26 13.88 8.31 -92.70 -0.77 13.11 16 Total: -1.00 -59.81 300.45 4.15 -55.66 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.44 Total: 18.72 kcal Atomic # 6 Polarization: -40.75 SS G_CDS: 4.47 Total: -36.28 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -2.75 Total: -77.76 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.03 Total: -5.61 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -59.81 4.15 -55.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459727348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.087 kcal (2) G-P(sol) polarization free energy of solvation -59.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds