Wall clock time and date at job start Mon Mar 30 2020 17:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47693 * 2 1 4 4 C 1.53008 * 109.47006 * 240.00136 * 2 1 3 5 5 C 1.50703 * 109.47224 * 120.00525 * 2 1 3 6 6 C 1.33119 * 120.00170 * 72.59899 * 5 2 1 7 7 C 1.46951 * 119.99967 * 350.77334 * 6 5 2 8 8 O 1.21665 * 120.00205 * 354.62638 * 7 6 5 9 9 N 1.34779 * 119.99942 * 174.63115 * 7 6 5 10 10 C 1.36816 * 119.99806 * 176.37084 * 9 7 6 11 11 H 1.08007 * 120.00428 * 16.97201 * 10 9 7 12 12 C 1.39076 * 120.00145 * 196.97596 * 10 9 7 13 13 N 1.31354 * 119.99962 * 12.21295 * 12 10 9 14 14 Si 1.86802 * 120.00370 * 192.22150 * 12 10 9 15 15 H 1.48498 * 109.47283 * 59.99424 * 14 12 10 16 16 H 1.48498 * 109.47383 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46908 * 299.99693 * 14 12 10 18 18 C 1.46491 * 120.00128 * 356.09537 * 9 7 6 19 19 C 1.53004 * 117.50022 * 309.99384 * 18 9 7 20 20 C 1.52999 * 59.99901 * 252.50975 * 19 18 9 21 21 H 1.09004 * 109.46628 * 335.36740 * 1 2 3 22 22 H 1.09004 * 109.47503 * 95.35693 * 1 2 3 23 23 H 1.08998 * 109.47620 * 215.36792 * 1 2 3 24 24 H 1.08994 * 109.47481 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47059 * 300.00363 * 3 2 1 26 26 H 1.08997 * 109.46504 * 59.99927 * 3 2 1 27 27 H 1.08998 * 109.46965 * 260.95702 * 4 2 1 28 28 H 1.08996 * 109.47130 * 20.95232 * 4 2 1 29 29 H 1.08994 * 109.47066 * 140.95506 * 4 2 1 30 30 H 1.07999 * 119.99867 * 252.60590 * 5 2 1 31 31 H 1.08003 * 120.00077 * 170.77123 * 6 5 2 32 32 H 0.96997 * 120.00357 * 180.02562 * 13 12 10 33 33 H 1.08999 * 115.55393 * 95.69717 * 18 9 7 34 34 H 1.09004 * 117.49772 * 359.97438 * 19 18 9 35 35 H 1.08992 * 117.50328 * 145.02140 * 19 18 9 36 36 H 1.09002 * 117.49874 * 252.50887 * 20 19 18 37 37 H 1.09004 * 117.52079 * 107.47874 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.9292 -2.0345 1.3233 7 6 1.1489 -2.7823 0.3276 8 8 0.5174 -2.1852 -0.5238 9 7 1.1328 -4.1296 0.3575 10 6 0.3482 -4.8241 -0.5222 11 1 -0.0393 -4.3342 -1.4034 12 6 0.0493 -6.1609 -0.2818 13 7 0.3103 -6.6917 0.8910 14 14 -0.7232 -7.2019 -1.6269 15 1 0.1824 -7.2426 -2.8030 16 1 -0.9405 -8.5814 -1.1220 17 1 -2.0253 -6.6092 -2.0251 18 6 1.9600 -4.8506 1.3280 19 6 3.4374 -4.4639 1.4225 20 6 3.0339 -5.7923 0.7795 21 1 -0.3633 0.9342 0.4284 22 1 -0.3634 -0.0959 -1.0232 23 1 -0.3634 -0.8380 0.5948 24 1 3.1300 1.4424 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9562 0.8900 27 1 2.3133 -1.7445 -0.9919 28 1 1.2562 -0.7342 -2.0067 29 1 2.9135 -0.1989 -1.6392 30 1 2.4759 -0.1456 2.0369 31 1 2.4189 -2.5590 2.1304 32 1 0.1022 -7.6241 1.0586 33 1 1.4564 -5.1439 2.2491 34 1 3.7939 -3.6733 0.7622 35 1 3.9059 -4.5026 2.4058 36 1 3.2370 -6.7049 1.3399 37 1 3.1246 -5.8757 -0.3036 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491862051.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:43 Heat of formation + Delta-G solvation = 25.865647 kcal Electronic energy + Delta-G solvation = -17954.551518 eV Core-core repulsion = 15313.189268 eV Total energy + Delta-G solvation = -2641.362250 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.16670 -38.85076 -36.85145 -34.89185 -33.02914 -32.14673 -28.01128 -27.92601 -27.26943 -24.29933 -23.10649 -22.71622 -20.99793 -18.94473 -18.55601 -17.58116 -16.97124 -16.13545 -15.91779 -15.65505 -15.31348 -14.79155 -14.60788 -14.20835 -13.96815 -13.54145 -13.08983 -12.97524 -12.87854 -12.67818 -12.38624 -12.26315 -12.14316 -12.01959 -11.64501 -11.60416 -11.36530 -11.20837 -10.98011 -10.60018 -10.00422 -9.74843 -9.49668 -8.22765 -5.80720 0.76434 1.39251 1.41467 1.48240 2.28690 2.64129 3.07218 3.21765 3.31739 3.89869 4.04991 4.21853 4.26766 4.35962 4.42369 4.61723 4.65504 4.78894 4.86289 4.89266 4.95898 5.00507 5.08445 5.12240 5.31721 5.34081 5.38933 5.40796 5.48167 5.55983 5.60493 5.67312 5.70444 5.94431 6.20835 6.64602 7.29664 7.63214 8.23308 8.76935 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.030681 B = 0.008506 C = 0.007236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.411310 B = 3291.186362 C = 3868.459172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.037 4.037 3 C -0.131 4.131 4 C -0.101 4.101 5 C -0.076 4.076 6 C -0.209 4.209 7 C 0.459 3.541 8 O -0.593 6.593 9 N -0.436 5.436 10 C -0.337 4.337 11 H 0.071 0.929 12 C 0.006 3.994 13 N -0.881 5.881 14 Si 0.976 3.024 15 H -0.275 1.275 16 H -0.271 1.271 17 H -0.279 1.279 18 C 0.117 3.883 19 C -0.179 4.179 20 C -0.157 4.157 21 H 0.047 0.953 22 H 0.031 0.969 23 H 0.033 0.967 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.036 0.964 28 H 0.031 0.969 29 H 0.037 0.963 30 H 0.153 0.847 31 H 0.137 0.863 32 H 0.270 0.730 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.127 0.873 36 H 0.095 0.905 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.698 7.799 3.318 10.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.037 4.037 3 C -0.188 4.188 4 C -0.158 4.158 5 C -0.096 4.096 6 C -0.229 4.229 7 C 0.253 3.747 8 O -0.481 6.481 9 N -0.154 5.154 10 C -0.465 4.465 11 H 0.089 0.911 12 C -0.197 4.197 13 N -0.519 5.519 14 Si 0.801 3.199 15 H -0.200 1.200 16 H -0.195 1.195 17 H -0.205 1.205 18 C 0.012 3.988 19 C -0.216 4.216 20 C -0.195 4.195 21 H 0.065 0.935 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.171 0.829 31 H 0.154 0.846 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.145 0.855 36 H 0.113 0.887 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.350 7.834 2.997 10.520 hybrid contribution -0.763 -1.222 -0.811 1.653 sum 5.587 6.612 2.186 8.928 Atomic orbital electron populations 1.21708 0.94381 0.98598 1.00478 1.19595 0.95533 0.95473 0.93067 1.21937 1.01179 0.93434 1.02243 1.22014 0.98153 0.99067 0.96605 1.23958 0.94457 0.93866 0.97344 1.22887 1.02849 0.96001 1.01195 1.18794 0.86368 0.81810 0.87736 1.90718 1.49662 1.67110 1.40645 1.43261 1.37261 1.04325 1.30538 1.19456 1.29028 0.94288 1.03760 0.91112 1.25819 0.97434 0.97941 0.98552 1.69969 1.46561 1.14331 1.20997 0.85260 0.78432 0.77588 0.78629 1.20020 1.19530 1.20485 1.21005 0.85113 0.98809 0.93842 1.23595 0.96729 0.98056 1.03245 1.22706 1.03678 0.94168 0.98931 0.93472 0.94942 0.94796 0.91660 0.92632 0.91271 0.94472 0.94991 0.94392 0.82934 0.84560 0.92030 0.88746 0.89563 0.85529 0.88658 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.50 7.62 71.98 0.55 -2.95 16 2 C -0.04 -1.20 0.75 -52.93 -0.04 -1.24 16 3 C -0.13 -3.09 7.97 71.98 0.57 -2.52 16 4 C -0.10 -3.86 7.60 71.98 0.55 -3.32 16 5 C -0.08 -2.37 8.49 24.54 0.21 -2.16 16 6 C -0.21 -7.79 7.55 23.40 0.18 -7.61 16 7 C 0.46 22.26 5.48 86.53 0.47 22.74 16 8 O -0.59 -31.05 8.20 -4.24 -0.03 -31.08 16 9 N -0.44 -22.60 2.93 -617.35 -1.81 -24.41 16 10 C -0.34 -19.28 9.27 84.12 0.78 -18.50 16 11 H 0.07 4.34 7.29 -2.91 -0.02 4.32 16 12 C 0.01 0.29 5.02 84.97 0.43 0.72 16 13 N -0.88 -46.27 10.23 21.69 0.22 -46.05 16 14 Si 0.98 43.41 29.57 68.60 2.03 45.44 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 18 C 0.12 5.24 3.44 44.99 0.15 5.40 16 19 C -0.18 -6.13 7.99 30.60 0.24 -5.89 16 20 C -0.16 -6.41 9.11 30.59 0.28 -6.13 16 21 H 0.05 1.43 7.75 -2.38 -0.02 1.42 16 22 H 0.03 1.30 6.94 -2.39 -0.02 1.28 16 23 H 0.03 1.47 5.89 -2.39 -0.01 1.45 16 24 H 0.06 1.35 8.13 -2.39 -0.02 1.34 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.38 8.12 -2.39 -0.02 1.36 16 27 H 0.04 1.62 4.70 -2.39 -0.01 1.61 16 28 H 0.03 1.33 6.69 -2.39 -0.02 1.32 16 29 H 0.04 1.22 7.71 -2.39 -0.02 1.20 16 30 H 0.15 3.44 8.01 -2.91 -0.02 3.41 16 31 H 0.14 4.51 5.80 -2.91 -0.02 4.50 16 32 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 33 H 0.09 4.50 7.61 -2.39 -0.02 4.48 16 34 H 0.09 3.01 7.33 -2.39 -0.02 2.99 16 35 H 0.13 3.38 8.14 -2.39 -0.02 3.36 16 36 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 37 H 0.06 2.77 8.14 -2.38 -0.02 2.75 16 Total: -1.00 -62.96 285.37 5.82 -57.14 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 1.04 Total: 20.42 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 4.37 Total: -21.46 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -1.59 Total: -70.46 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.03 Total: -31.08 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -62.96 5.82 -57.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491862051.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.008 kcal (2) G-P(sol) polarization free energy of solvation -62.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds