Wall clock time and date at job start Mon Mar 30 2020 17:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99819 * 2 1 4 4 H 1.48491 * 109.47410 * 270.00220 * 3 2 1 5 5 H 1.48504 * 109.46876 * 30.00498 * 3 2 1 6 6 H 1.48506 * 109.47254 * 149.99980 * 3 2 1 7 7 C 1.37869 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00426 * 359.97438 * 7 2 1 9 9 C 1.50709 * 120.00242 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47079 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46929 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47237 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99969 * 179.72043 * 12 11 10 14 14 O 1.21617 * 120.00330 * 0.02562 * 13 12 11 15 15 C 1.47106 * 120.00040 * 180.02562 * 13 12 11 16 16 C 1.32986 * 120.00138 * 180.02562 * 15 13 12 17 17 C 1.50706 * 120.00177 * 180.02562 * 16 15 13 18 18 C 1.53781 * 113.61140 * 219.13679 * 17 16 15 19 19 C 1.53959 * 87.01542 * 220.04422 * 18 17 16 20 20 C 1.53773 * 113.61715 * 121.52511 * 17 16 15 21 21 H 0.96994 * 119.99926 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46736 * 59.99748 * 9 7 2 23 23 H 1.08994 * 109.47114 * 299.99983 * 9 7 2 24 24 H 1.09000 * 109.47441 * 60.00304 * 10 9 7 25 25 H 1.09002 * 109.47087 * 299.99750 * 10 9 7 26 26 H 1.09001 * 109.47671 * 60.00109 * 11 10 9 27 27 H 1.08998 * 109.47454 * 300.00107 * 11 10 9 28 28 H 0.97005 * 119.99811 * 0.02562 * 12 11 10 29 29 H 1.07998 * 119.99541 * 0.02562 * 15 13 12 30 30 H 1.07998 * 120.00317 * 359.97438 * 16 15 13 31 31 H 1.09002 * 112.84321 * 350.32529 * 17 16 15 32 32 H 1.08994 * 113.61583 * 334.55895 * 18 17 16 33 33 H 1.08998 * 113.61622 * 105.46984 * 18 17 16 34 34 H 1.09002 * 113.53364 * 270.81008 * 19 18 17 35 35 H 1.08999 * 113.74256 * 139.94293 * 19 18 17 36 36 H 1.09000 * 113.61392 * 254.52999 * 20 17 16 37 37 H 1.08998 * 113.61640 * 25.43078 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5516 -2.6363 -0.0009 12 7 6.0401 -4.0176 -0.0002 13 6 7.3651 -4.2638 -0.0057 14 8 8.1554 -3.3394 -0.0108 15 6 7.8555 -5.6507 -0.0056 16 6 9.1630 -5.8936 -0.0105 17 6 9.6655 -7.3145 -0.0109 18 6 10.9047 -7.5298 0.8738 19 6 11.4394 -8.4503 -0.2385 20 6 10.5606 -7.6510 -1.2151 21 1 -0.4850 0.8400 0.0004 22 1 3.8753 -0.6802 0.8888 23 1 3.8746 -0.6799 -0.8911 24 1 3.6580 -3.1505 -0.8907 25 1 3.6587 -3.1500 0.8893 26 1 5.9150 -2.1225 0.8890 27 1 5.9150 -2.1226 -0.8909 28 1 5.4097 -4.7549 -0.0002 29 1 7.1537 -6.4715 -0.0014 30 1 9.8648 -5.0728 -0.0150 31 1 8.8736 -8.0434 0.1619 32 1 11.5001 -6.6283 1.0182 33 1 10.6900 -8.0504 1.8070 34 1 11.1334 -9.4906 -0.1271 35 1 12.5080 -8.3408 -0.4229 36 1 10.0684 -8.2693 -1.9658 37 1 11.0617 -6.7827 -1.6429 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492096547.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:46 Heat of formation + Delta-G solvation = -26.147901 kcal Electronic energy + Delta-G solvation = -15587.399497 eV Core-core repulsion = 12943.781771 eV Total energy + Delta-G solvation = -2643.617727 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.68997 -38.97301 -35.54912 -33.31422 -33.06322 -31.39206 -27.65498 -26.00925 -25.94098 -23.17928 -21.44734 -20.57357 -19.86082 -19.35764 -17.18138 -16.74609 -16.10040 -15.37382 -15.32141 -15.06706 -14.21181 -13.94293 -13.55115 -13.24710 -12.91957 -12.81724 -12.69330 -12.01835 -11.93610 -11.89431 -11.08785 -11.04824 -10.93051 -10.88224 -10.79499 -10.19524 -9.96171 -9.77519 -9.55087 -9.48761 -9.22406 -8.79765 -8.55322 -6.06128 -4.04832 1.28240 3.31647 3.37767 3.38883 3.41814 3.43725 4.24089 4.33549 4.35304 4.44744 4.56556 4.79727 4.93505 5.17756 5.27988 5.33259 5.38275 5.39636 5.54131 5.58340 5.58798 5.67143 5.70769 6.02623 6.04399 6.21848 6.30983 6.38782 6.45702 6.72861 6.80666 7.23345 7.36807 7.68835 7.77636 8.37674 8.50740 8.97654 9.56184 11.07123 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.075714 B = 0.003087 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.725210 B = 9067.069228 C = 9285.926999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.113 4.113 11 C 0.113 3.887 12 N -0.721 5.721 13 C 0.538 3.462 14 O -0.553 6.553 15 C -0.210 4.210 16 C -0.060 4.060 17 C -0.093 4.093 18 C -0.132 4.132 19 C -0.144 4.144 20 C -0.130 4.130 21 H 0.263 0.737 22 H 0.019 0.981 23 H 0.014 0.986 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.400 0.600 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.181 -16.789 -0.188 26.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.010 4.010 12 N -0.371 5.371 13 C 0.327 3.673 14 O -0.433 6.433 15 C -0.231 4.231 16 C -0.080 4.080 17 C -0.112 4.112 18 C -0.170 4.170 19 C -0.181 4.181 20 C -0.168 4.168 21 H 0.073 0.927 22 H 0.037 0.963 23 H 0.033 0.967 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.234 0.766 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 20.552 -15.983 -0.185 26.037 hybrid contribution -0.176 0.579 -0.018 0.605 sum 20.377 -15.405 -0.203 25.545 Atomic orbital electron populations 1.69912 1.06311 1.26955 1.51044 1.25030 0.94757 0.99250 0.94473 0.86771 0.80407 0.83504 0.78591 1.20245 1.21364 1.18890 1.21100 0.89314 0.94512 1.51052 0.91009 1.19507 0.97267 0.91508 0.96665 1.21704 0.90644 1.01032 1.01738 1.21655 0.96129 0.81252 1.01917 1.46083 1.06680 1.09995 1.74326 1.18636 0.82565 0.89518 0.76620 1.90771 1.55509 1.46319 1.50725 1.22689 0.97143 0.95702 1.07599 1.23646 0.96051 0.97383 0.90893 1.21820 0.97232 0.93988 0.98138 1.22955 0.96370 1.00225 0.97403 1.22882 0.99855 0.98772 0.96583 1.22895 0.97416 1.00395 0.96057 0.92699 0.96304 0.96735 0.92110 0.92084 0.91787 0.91793 0.76556 0.85745 0.85594 0.88371 0.89660 0.91116 0.90089 0.91246 0.91090 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.39 16 10 C -0.11 -2.15 5.27 -26.73 -0.14 -2.29 16 11 C 0.11 1.94 5.67 -4.04 -0.02 1.92 16 12 N -0.72 -10.31 5.55 -61.49 -0.34 -10.65 16 13 C 0.54 8.08 7.76 -12.66 -0.10 7.98 16 14 O -0.55 -10.47 16.22 5.26 0.09 -10.38 16 15 C -0.21 -2.30 9.66 -37.81 -0.37 -2.67 16 16 C -0.06 -0.60 8.79 -36.13 -0.32 -0.91 16 17 C -0.09 -0.69 4.01 -90.96 -0.36 -1.05 16 18 C -0.13 -0.86 7.64 -25.82 -0.20 -1.06 16 19 C -0.14 -0.82 8.09 -25.83 -0.21 -1.03 16 20 C -0.13 -0.86 7.63 -25.92 -0.20 -1.06 16 21 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 22 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 23 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.40 4.57 8.46 -40.82 -0.35 4.23 16 29 H 0.12 1.02 7.99 -52.49 -0.42 0.60 16 30 H 0.13 1.42 7.49 -52.49 -0.39 1.02 16 31 H 0.10 0.64 8.03 -51.93 -0.42 0.22 16 32 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.59 8.09 -51.93 -0.42 0.16 16 LS Contribution 312.00 15.07 4.70 4.70 Total: -1.00 -32.84 312.00 -8.06 -40.90 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.15 Total: -0.82 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -2.46 Total: -13.86 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.43 Total: -37.77 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.84 -8.06 -40.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492096547.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.749 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds