Wall clock time and date at job start Mon Mar 30 2020 17:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.50706 * 109.47147 * 179.97438 * 3 2 1 5 5 C 1.38115 * 120.39928 * 0.02562 * 4 3 2 6 6 C 1.39623 * 118.33428 * 179.97438 * 5 4 3 7 7 N 1.38547 * 120.53155 * 179.97438 * 6 5 4 8 8 C 1.46497 * 120.00037 * 185.00152 * 7 6 5 9 9 C 1.46507 * 119.99790 * 4.99752 * 7 6 5 10 10 C 1.50694 * 109.47083 * 90.00455 * 9 7 6 11 11 H 1.08004 * 120.00106 * 359.97438 * 10 9 7 12 12 C 1.37876 * 120.00230 * 179.97438 * 10 9 7 13 13 N 1.31518 * 119.99839 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00216 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46913 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47341 * 119.99840 * 14 12 10 17 17 H 1.48501 * 109.47109 * 239.99910 * 14 12 10 18 18 N 1.32985 * 118.93686 * 359.97438 * 6 5 4 19 19 C 1.31746 * 120.68810 * 0.02562 * 18 6 5 20 20 N 1.31794 * 121.83267 * 359.71383 * 19 18 6 21 21 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47354 * 300.00131 * 1 2 3 23 23 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 24 24 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 25 25 H 1.09000 * 109.47736 * 300.00432 * 3 2 1 26 26 H 1.08011 * 120.83221 * 359.97438 * 5 4 3 27 27 H 1.09002 * 109.47077 * 89.99791 * 8 7 6 28 28 H 1.08997 * 109.47177 * 209.99833 * 8 7 6 29 29 H 1.09003 * 109.46886 * 329.99850 * 8 7 6 30 30 H 1.09000 * 109.46790 * 210.00200 * 9 7 6 31 31 H 1.08996 * 109.47173 * 330.00210 * 9 7 6 32 32 H 0.96999 * 120.00002 * 180.02562 * 13 12 10 33 33 H 1.08003 * 119.08943 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.1152 -0.0563 0.0006 6 6 5.5102 -0.1163 0.0006 7 7 6.1621 -1.3388 0.0011 8 6 7.6219 -1.3904 0.1118 9 6 5.3914 -2.5799 -0.1090 10 6 5.2365 -2.9478 -1.5621 11 1 5.6685 -2.3197 -2.3272 12 6 4.5433 -4.0862 -1.9150 13 7 4.0177 -4.8513 -0.9833 14 14 4.3519 -4.5426 -3.7162 15 1 5.0307 -3.5259 -4.5593 16 1 4.9634 -5.8742 -3.9572 17 1 2.9091 -4.5902 -4.0642 18 7 6.2030 1.0188 0.0002 19 6 5.5863 2.1830 0.0003 20 7 4.2715 2.2731 -0.0049 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 1.6886 1.8463 0.8900 25 1 1.6886 1.8464 -0.8899 26 1 3.5223 -0.9591 0.0005 27 1 7.9049 -1.4450 1.1630 28 1 7.9950 -2.2710 -0.4111 29 1 8.0520 -0.4936 -0.3343 30 1 5.9146 -3.3801 0.4146 31 1 4.4070 -2.4371 0.3366 32 1 3.5303 -5.6524 -1.2315 33 1 6.1745 3.0888 0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517195637.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:55 Heat of formation + Delta-G solvation = 12.001079 kcal Electronic energy + Delta-G solvation = -16765.538562 eV Core-core repulsion = 14020.034756 eV Total energy + Delta-G solvation = -2745.503806 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.29440 -37.67695 -36.36441 -33.19479 -32.44499 -30.77873 -28.30450 -27.60468 -25.80299 -25.00294 -23.74980 -22.24647 -20.32561 -17.15019 -16.87379 -16.51416 -15.80443 -15.71757 -14.93417 -14.45482 -14.38958 -14.35194 -13.81507 -13.38064 -13.20162 -12.42834 -12.21545 -12.08167 -11.52574 -11.32599 -11.19949 -10.96571 -10.75896 -10.42875 -10.24627 -9.82805 -9.76524 -9.45995 -8.97295 -8.59619 -8.53511 -7.02793 -6.13609 -4.22492 1.71974 2.04059 3.23614 3.31575 3.36512 3.67320 3.78100 4.35559 4.52236 4.89119 4.90706 5.17964 5.30368 5.40340 5.43989 5.48122 5.62153 5.79766 5.92502 6.00213 6.11066 6.22517 6.39154 6.43392 6.86405 7.04555 7.18154 7.29734 7.51659 7.78494 8.06310 8.14356 8.22079 8.80548 8.94539 9.44437 10.91189 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.017279 B = 0.009385 C = 0.006815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.097544 B = 2982.779931 C = 4107.809002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.119 3.881 4 C 0.175 3.825 5 C -0.248 4.248 6 C 0.442 3.558 7 N -0.576 5.576 8 C 0.099 3.901 9 C 0.246 3.754 10 C -0.535 4.535 11 H 0.060 0.940 12 C 0.065 3.935 13 N -0.891 5.891 14 Si 0.898 3.102 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.282 1.282 18 N -0.595 5.595 19 C 0.328 3.672 20 N -0.582 5.582 21 H 0.089 0.911 22 H 0.039 0.961 23 H 0.040 0.960 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.158 0.842 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.265 0.735 33 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.653 9.336 2.716 10.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C 0.042 3.958 4 C 0.036 3.964 5 C -0.277 4.277 6 C 0.197 3.803 7 N -0.284 5.284 8 C -0.044 4.044 9 C 0.127 3.873 10 C -0.573 4.573 11 H 0.078 0.922 12 C -0.138 4.138 13 N -0.529 5.529 14 Si 0.725 3.275 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.207 1.207 18 N -0.322 5.322 19 C 0.037 3.963 20 N -0.305 5.305 21 H 0.108 0.892 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.176 0.824 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.046 9.514 2.743 10.111 hybrid contribution -0.765 -0.910 -1.044 1.582 sum -2.811 8.605 1.698 9.210 Atomic orbital electron populations 1.22740 0.80722 1.03111 0.99626 1.87978 1.19668 1.26526 1.95403 1.20857 0.88474 0.85158 1.01334 1.20684 0.94817 0.88798 0.92125 1.22096 0.94344 1.00761 1.10453 1.18646 0.88707 0.86381 0.86522 1.47083 1.06405 1.03513 1.71430 1.21496 0.80396 1.02582 0.99975 1.19506 0.91692 0.78617 0.97472 1.21511 1.35118 1.08662 0.92060 0.92185 1.24926 0.95024 0.95936 0.97881 1.69934 1.35604 1.14856 1.32539 0.86436 0.78007 0.78292 0.84723 1.19758 1.20846 1.20748 1.67893 1.41392 0.98174 1.24754 1.24269 0.87522 0.94361 0.90135 1.67848 1.07299 1.32503 1.22869 0.89242 0.94194 0.94115 0.91256 0.91164 0.82430 0.94221 0.91344 0.91251 0.94261 0.93999 0.92580 0.79787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.38 -6.36 9.25 -35.23 -0.33 -6.69 16 3 C 0.12 1.84 6.50 36.01 0.23 2.07 16 4 C 0.17 3.31 6.82 -82.33 -0.56 2.75 16 5 C -0.25 -5.35 8.63 -39.11 -0.34 -5.68 16 6 C 0.44 9.66 7.39 -154.78 -1.14 8.51 16 7 N -0.58 -12.81 2.96 -182.93 -0.54 -13.35 16 8 C 0.10 1.85 10.51 59.85 0.63 2.48 16 9 C 0.25 6.18 5.03 -5.19 -0.03 6.15 16 10 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 11 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 12 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 14 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 N -0.60 -11.81 9.23 -13.81 -0.13 -11.93 16 19 C 0.33 5.70 12.28 -92.20 -1.13 4.56 16 20 N -0.58 -10.56 10.37 -10.88 -0.11 -10.67 16 21 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 22 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.16 3.70 5.20 -52.48 -0.27 3.42 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 29 H 0.07 1.24 7.33 -51.93 -0.38 0.86 16 30 H 0.04 1.01 8.07 -51.93 -0.42 0.59 16 31 H 0.04 1.11 6.05 -51.93 -0.31 0.80 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.19 2.40 8.06 -52.48 -0.42 1.98 16 LS Contribution 286.74 15.07 4.32 4.32 Total: -1.00 -30.46 286.74 -7.03 -37.49 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.31 Total: -0.09 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -1.65 Total: 9.13 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.05 Total: -60.44 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.33 Total: -6.69 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.46 -7.03 -37.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517195637.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.493 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds