Wall clock time and date at job start Mon Mar 30 2020 17:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99854 * 2 1 4 4 H 1.48507 * 109.46709 * 239.99642 * 3 2 1 5 5 H 1.48491 * 109.47238 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47119 * 119.99934 * 3 2 1 7 7 C 1.37878 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00164 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99848 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47117 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47426 * 179.97438 * 10 9 7 12 12 C 1.34770 * 120.00170 * 179.97438 * 11 10 9 13 13 O 1.21281 * 120.00141 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00151 * 180.02562 * 12 11 10 15 15 C 1.53950 * 113.57771 * 80.75936 * 14 12 11 16 16 C 1.53159 * 86.69660 * 139.37686 * 15 14 12 17 17 C 1.52906 * 121.13989 * 100.81522 * 16 15 14 18 18 C 1.53949 * 86.78398 * 100.82555 * 17 16 15 19 19 C 1.52908 * 121.14128 * 209.38149 * 16 15 14 20 20 C 1.52914 * 88.03442 * 335.09777 * 16 15 14 21 21 H 0.97001 * 120.00295 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47425 * 60.00178 * 9 7 2 23 23 H 1.08996 * 109.46992 * 299.99168 * 9 7 2 24 24 H 1.09002 * 109.46825 * 60.00012 * 10 9 7 25 25 H 1.09004 * 109.47231 * 299.99996 * 10 9 7 26 26 H 0.96996 * 119.99481 * 0.02562 * 11 10 9 27 27 H 1.09002 * 112.82235 * 309.66867 * 14 12 11 28 28 H 1.09004 * 113.66202 * 253.88712 * 15 14 12 29 29 H 1.08998 * 113.66740 * 24.93903 * 15 14 12 30 30 H 1.08998 * 113.66290 * 215.29885 * 17 16 15 31 31 H 1.08999 * 113.66439 * 346.35096 * 17 16 15 32 32 H 1.09000 * 113.57955 * 270.13047 * 18 17 16 33 33 H 1.08999 * 113.65113 * 139.34661 * 18 17 16 34 34 H 1.09002 * 113.66204 * 13.64659 * 19 16 15 35 35 H 1.09003 * 113.66133 * 144.69680 * 19 16 15 36 36 H 1.08995 * 113.66233 * 270.42754 * 20 16 15 37 37 H 1.08998 * 113.74404 * 139.37723 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9309 0.0012 12 6 2.1866 -6.0980 0.0007 13 8 3.3994 -6.0980 0.0003 14 6 1.4331 -7.4031 0.0008 15 6 0.9285 -7.8229 -1.3918 16 6 1.3413 -9.2486 -1.0140 17 6 0.3067 -10.2748 -0.5505 18 6 0.3683 -10.8522 -1.9762 19 6 1.7825 -10.2527 -2.0794 20 6 2.3467 -8.6417 -0.0347 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.8718 -3.6043 0.8906 25 1 2.8719 -3.6044 -0.8895 26 1 0.5428 -4.9308 0.0011 27 1 0.6665 -7.4487 0.7744 28 1 -0.1463 -7.6977 -1.5237 29 1 1.5092 -7.4023 -2.2127 30 1 0.6790 -10.9566 0.2141 31 1 -0.6592 -9.8382 -0.2966 32 1 -0.3483 -10.3993 -2.6614 33 1 0.3532 -11.9416 -2.0078 34 1 1.9955 -9.7985 -3.0471 35 1 2.5697 -10.9283 -1.7446 36 1 3.3254 -8.4509 -0.4748 37 1 2.4055 -9.1693 0.9172 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566797311.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:06 Heat of formation + Delta-G solvation = -18.508315 kcal Electronic energy + Delta-G solvation = -16375.400558 eV Core-core repulsion = 13732.114108 eV Total energy + Delta-G solvation = -2643.286449 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.80740 -38.65677 -34.98554 -34.48429 -32.80112 -29.70715 -26.19667 -25.91097 -25.69212 -24.22758 -21.90694 -20.82338 -19.54672 -18.07462 -16.97401 -16.32373 -15.72099 -15.50216 -14.99198 -14.63351 -14.50943 -14.00174 -13.18993 -12.90943 -12.84522 -12.46968 -12.27973 -12.20530 -11.99659 -11.20371 -11.14126 -11.03939 -10.96099 -10.64939 -10.39312 -10.30569 -10.21173 -10.08214 -9.73415 -9.39831 -9.07411 -8.51613 -8.32537 -6.08824 -4.11742 3.03795 3.31487 3.35175 3.38287 3.74933 4.23975 4.35247 4.43479 4.46883 4.63114 4.66741 4.71716 5.26196 5.28029 5.29992 5.40968 5.48463 5.54584 5.65623 5.70761 5.76576 5.80399 5.84869 5.93032 6.17914 6.29439 6.34692 6.36938 6.43880 6.75817 6.97673 7.52699 7.62832 7.89410 8.08115 8.29099 8.72309 8.94185 9.52989 11.02743 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.060260 B = 0.003839 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.544372 B = 7291.027137 C = 7508.041153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.120 3.880 11 N -0.721 5.721 12 C 0.513 3.487 13 O -0.553 6.553 14 C -0.136 4.136 15 C -0.097 4.097 16 C -0.107 4.107 17 C -0.117 4.117 18 C -0.140 4.140 19 C -0.128 4.128 20 C -0.102 4.102 21 H 0.263 0.737 22 H 0.022 0.978 23 H 0.022 0.978 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.397 0.603 27 H 0.109 0.891 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 -19.825 -2.163 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.024 4.024 10 C -0.002 4.002 11 N -0.371 5.371 12 C 0.299 3.701 13 O -0.431 6.431 14 C -0.157 4.157 15 C -0.134 4.134 16 C -0.108 4.108 17 C -0.154 4.154 18 C -0.178 4.178 19 C -0.165 4.165 20 C -0.140 4.140 21 H 0.072 0.928 22 H 0.040 0.960 23 H 0.040 0.960 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.231 0.769 27 H 0.127 0.873 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.895 -19.666 -2.161 19.804 hybrid contribution -0.121 1.077 0.067 1.086 sum -1.016 -18.589 -2.093 18.734 Atomic orbital electron populations 1.69944 1.06088 1.26976 1.50335 1.24996 0.94897 0.99397 0.94981 0.86569 0.79520 0.82642 0.78791 1.20103 1.21232 1.20102 1.21029 0.93215 0.90452 1.51433 0.92323 1.19313 0.94194 0.91137 0.97795 1.21710 0.96056 0.81769 1.00654 1.46349 1.10492 1.06583 1.73640 1.20429 0.88081 0.85345 0.76254 1.90648 1.14118 1.87774 1.50580 1.22732 0.99985 0.93069 0.99908 1.22625 1.01376 0.93766 0.95664 1.22476 0.97519 0.93364 0.97398 1.22656 0.98538 0.97275 0.96937 1.22821 0.97601 1.00051 0.97277 1.22746 0.96867 0.98015 0.98877 1.22670 0.98140 0.93894 0.99256 0.92792 0.95977 0.95971 0.92682 0.92702 0.76939 0.87285 0.90575 0.89327 0.89868 0.91282 0.90258 0.91689 0.91394 0.90000 0.88594 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.12 2.62 5.61 -4.04 -0.02 2.60 16 11 N -0.72 -12.87 5.56 -60.29 -0.33 -13.20 16 12 C 0.51 8.87 7.35 -10.99 -0.08 8.78 16 13 O -0.55 -11.67 15.90 5.56 0.09 -11.58 16 14 C -0.14 -1.70 4.14 -90.79 -0.38 -2.07 16 15 C -0.10 -1.05 7.41 -26.15 -0.19 -1.25 16 16 C -0.11 -1.05 1.11 -154.58 -0.17 -1.22 16 17 C -0.12 -0.95 7.84 -26.28 -0.21 -1.16 16 18 C -0.14 -1.08 8.08 -25.75 -0.21 -1.29 16 19 C -0.13 -1.13 7.84 -26.28 -0.21 -1.33 16 20 C -0.10 -1.20 7.16 -26.28 -0.19 -1.39 16 21 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 22 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.40 6.14 8.47 -40.82 -0.35 5.80 16 27 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.31 7.44 -51.93 -0.39 0.92 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 307.72 15.07 4.64 4.64 Total: -1.00 -31.23 307.72 -8.29 -39.52 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.19 Total: 1.23 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -2.21 Total: -11.55 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.40 Total: -38.74 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.23 -8.29 -39.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566797311.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.008 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds