Wall clock time and date at job start Mon Mar 30 2020 17:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00061 * 2 1 4 4 H 1.48503 * 109.46901 * 269.99925 * 3 2 1 5 5 H 1.48495 * 109.47070 * 29.99937 * 3 2 1 6 6 H 1.48497 * 109.47251 * 149.99902 * 3 2 1 7 7 C 1.37878 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99736 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00154 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46968 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46870 * 180.02562 * 10 9 7 12 12 C 1.34772 * 119.99856 * 180.02562 * 11 10 9 13 13 O 1.21280 * 119.99905 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99955 * 179.97438 * 12 11 10 15 15 H 1.08995 * 115.56127 * 34.30723 * 14 12 11 16 16 C 1.53075 * 117.49351 * 248.59762 * 14 12 11 17 17 C 1.52998 * 59.98543 * 252.51436 * 16 14 12 18 18 H 1.09005 * 117.49665 * 107.50230 * 17 16 14 19 19 C 1.52998 * 117.50051 * 252.49907 * 17 16 14 20 20 C 1.53779 * 113.61250 * 248.74882 * 19 17 16 21 21 C 1.53787 * 87.07963 * 220.01477 * 20 19 17 22 22 C 1.53779 * 113.61561 * 151.24841 * 19 17 16 23 23 H 0.96996 * 120.00050 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46770 * 59.99955 * 9 7 2 25 25 H 1.09000 * 109.47118 * 299.99799 * 9 7 2 26 26 H 1.08997 * 109.46717 * 60.00227 * 10 9 7 27 27 H 1.09000 * 109.47273 * 299.99994 * 10 9 7 28 28 H 0.97003 * 120.00107 * 0.02562 * 11 10 9 29 29 H 1.09001 * 117.51662 * 145.03489 * 16 14 12 30 30 H 1.09000 * 117.51189 * 359.97438 * 16 14 12 31 31 H 1.09001 * 112.84844 * 19.94125 * 19 17 16 32 32 H 1.08997 * 113.61646 * 105.47109 * 20 19 17 33 33 H 1.08998 * 113.69354 * 334.57417 * 20 19 17 34 34 H 1.09004 * 113.61202 * 139.98084 * 21 20 19 35 35 H 1.08994 * 113.61447 * 270.88515 * 21 20 19 36 36 H 1.09002 * 113.61557 * 25.43372 * 22 19 17 37 37 H 1.09004 * 113.61501 * 254.52792 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0023 11 7 5.4865 -2.6366 0.0035 12 6 6.1604 -3.8037 0.0041 13 8 5.5540 -4.8540 0.0042 14 6 7.6674 -3.8037 0.0047 15 1 8.1375 -2.9913 0.5589 16 6 8.3746 -4.2996 -1.2591 17 6 8.3739 -5.1609 0.0055 18 1 7.7486 -6.0538 0.0059 19 6 9.6861 -5.2738 0.7841 20 6 10.3199 -6.6736 0.7233 21 6 10.6742 -6.4916 2.2087 22 6 9.4899 -5.5140 2.2903 23 1 -0.4850 0.8400 0.0004 24 1 3.8744 -0.6800 0.8911 25 1 3.8752 -0.6804 -0.8889 26 1 3.6585 -3.1509 -0.8875 27 1 3.6578 -3.1498 0.8925 28 1 5.9715 -1.7965 0.0038 29 1 9.3100 -3.8134 -1.5364 30 1 7.7499 -4.6261 -2.0904 31 1 10.3841 -4.4682 0.5563 32 1 11.1909 -6.7306 0.0705 33 1 9.6010 -7.4723 0.5406 34 1 10.5371 -7.3943 2.8040 35 1 11.6427 -6.0188 2.3717 36 1 8.5431 -5.9947 2.5362 37 1 9.6910 -4.6348 2.9025 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567990932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:09 Heat of formation + Delta-G solvation = -13.466323 kcal Electronic energy + Delta-G solvation = -16142.910548 eV Core-core repulsion = 13499.842736 eV Total energy + Delta-G solvation = -2643.067812 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.02879 -38.72385 -35.87696 -34.81026 -32.77512 -30.21353 -26.72156 -25.80328 -25.31281 -23.19172 -21.26217 -20.76177 -19.70797 -19.63860 -17.11084 -16.84234 -15.91260 -15.29049 -15.15407 -14.83702 -14.18025 -13.84596 -13.54779 -13.08758 -12.76678 -12.62051 -12.61279 -12.29129 -11.99084 -11.49199 -11.22245 -11.04453 -10.84489 -10.73891 -10.39518 -10.29089 -10.03375 -9.97767 -9.94346 -9.46844 -9.27605 -8.64157 -8.51147 -6.11282 -4.11417 2.75976 3.25081 3.32680 3.34058 3.49238 3.80141 4.37537 4.39910 4.46851 4.50233 4.68733 4.85523 4.90519 5.05199 5.18624 5.21644 5.26380 5.48591 5.56604 5.59902 5.60918 5.70352 5.78634 5.87834 5.99847 6.13567 6.16297 6.20962 6.34546 6.56141 6.77942 7.14368 7.23329 7.66641 7.94272 8.43646 8.61001 8.93121 9.48830 11.01834 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.050777 B = 0.003852 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.294180 B = 7267.639696 C = 7362.689852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.130 3.870 11 N -0.722 5.722 12 C 0.535 3.465 13 O -0.549 6.549 14 C -0.186 4.186 15 H 0.120 0.880 16 C -0.150 4.150 17 C -0.109 4.109 18 H 0.117 0.883 19 C -0.082 4.082 20 C -0.132 4.132 21 C -0.145 4.145 22 C -0.135 4.135 23 H 0.265 0.735 24 H 0.022 0.978 25 H 0.018 0.982 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.397 0.603 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.764 -7.777 1.243 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.007 3.993 11 N -0.372 5.372 12 C 0.320 3.680 13 O -0.427 6.427 14 C -0.207 4.207 15 H 0.138 0.862 16 C -0.187 4.187 17 C -0.127 4.127 18 H 0.135 0.865 19 C -0.100 4.100 20 C -0.170 4.170 21 C -0.183 4.183 22 C -0.172 4.172 23 H 0.075 0.925 24 H 0.040 0.960 25 H 0.036 0.964 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.230 0.770 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 22.120 -8.403 1.250 23.696 hybrid contribution 0.459 1.528 -0.003 1.596 sum 22.580 -6.875 1.247 23.636 Atomic orbital electron populations 1.69901 1.06300 1.27063 1.50441 1.25004 0.94770 0.99163 0.94364 0.86744 0.80263 0.83516 0.78509 1.20213 1.21252 1.19083 1.20928 0.88674 0.94902 1.51647 0.90633 1.19794 0.97986 0.91354 0.96825 1.21511 0.76072 1.00111 1.01560 1.46255 1.09033 1.07862 1.74023 1.19610 0.88044 0.84049 0.76256 1.90670 1.70065 1.31546 1.50462 1.22288 0.92532 1.00819 1.05055 0.86219 1.23020 1.01569 1.02793 0.91358 1.22355 0.97221 0.94221 0.98918 0.86489 1.22158 0.94706 0.97929 0.95222 1.22911 1.00511 0.96992 0.96556 1.22835 0.98537 0.99867 0.97011 1.22911 0.98946 0.99534 0.95805 0.92540 0.96003 0.96422 0.92026 0.91982 0.77019 0.88060 0.88291 0.89246 0.91596 0.89867 0.91498 0.90390 0.89725 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 7 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 9 C -0.02 -0.51 4.16 -27.88 -0.12 -0.62 16 10 C 0.13 2.71 5.61 -4.04 -0.02 2.69 16 11 N -0.72 -12.23 5.56 -60.29 -0.33 -12.57 16 12 C 0.53 8.97 7.61 -10.99 -0.08 8.89 16 13 O -0.55 -11.35 16.26 5.56 0.09 -11.26 16 14 C -0.19 -2.25 5.91 -91.73 -0.54 -2.79 16 15 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 16 C -0.15 -1.55 9.95 -26.69 -0.27 -1.82 16 17 C -0.11 -1.20 4.92 -90.62 -0.45 -1.64 16 18 H 0.12 1.52 7.67 -51.93 -0.40 1.12 16 19 C -0.08 -0.72 3.81 -89.81 -0.34 -1.06 16 20 C -0.13 -1.04 7.64 -25.92 -0.20 -1.24 16 21 C -0.15 -1.09 8.08 -25.91 -0.21 -1.30 16 22 C -0.13 -1.19 7.64 -25.92 -0.20 -1.39 16 23 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 25 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 26 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 27 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.40 5.60 8.47 -40.82 -0.35 5.25 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.09 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.69 8.10 -51.93 -0.42 0.26 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 309.28 15.07 4.66 4.66 Total: -1.00 -32.00 309.28 -8.50 -40.50 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.17 Total: 2.47 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -2.85 Total: -13.53 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.44 Total: -39.30 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.00 -8.50 -40.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567990932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.034 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds