Wall clock time and date at job start Mon Mar 30 2020 17:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00061 * 2 1 4 4 H 1.48503 * 109.46901 * 269.99925 * 3 2 1 5 5 H 1.48495 * 109.47070 * 29.99937 * 3 2 1 6 6 H 1.48497 * 109.47251 * 149.99902 * 3 2 1 7 7 C 1.37878 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99736 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00154 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46968 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46870 * 180.02562 * 10 9 7 12 12 C 1.34772 * 119.99856 * 180.02562 * 11 10 9 13 13 O 1.21280 * 119.99905 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99955 * 179.97438 * 12 11 10 15 15 H 1.08995 * 115.56127 * 34.30723 * 14 12 11 16 16 C 1.53075 * 117.49351 * 248.59762 * 14 12 11 17 17 C 1.52998 * 59.98543 * 252.51436 * 16 14 12 18 18 H 1.09005 * 117.49665 * 107.50230 * 17 16 14 19 19 C 1.52998 * 117.50051 * 252.49907 * 17 16 14 20 20 C 1.53779 * 113.61250 * 248.74882 * 19 17 16 21 21 C 1.53787 * 87.07963 * 220.01477 * 20 19 17 22 22 C 1.53779 * 113.61561 * 151.24841 * 19 17 16 23 23 H 0.96996 * 120.00050 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46770 * 59.99955 * 9 7 2 25 25 H 1.09000 * 109.47118 * 299.99799 * 9 7 2 26 26 H 1.08997 * 109.46717 * 60.00227 * 10 9 7 27 27 H 1.09000 * 109.47273 * 299.99994 * 10 9 7 28 28 H 0.97003 * 120.00107 * 0.02562 * 11 10 9 29 29 H 1.09001 * 117.51662 * 145.03489 * 16 14 12 30 30 H 1.09000 * 117.51189 * 359.97438 * 16 14 12 31 31 H 1.09001 * 112.84844 * 19.94125 * 19 17 16 32 32 H 1.08997 * 113.61646 * 105.47109 * 20 19 17 33 33 H 1.08998 * 113.69354 * 334.57417 * 20 19 17 34 34 H 1.09004 * 113.61202 * 139.98084 * 21 20 19 35 35 H 1.08994 * 113.61447 * 270.88515 * 21 20 19 36 36 H 1.09002 * 113.61557 * 25.43372 * 22 19 17 37 37 H 1.09004 * 113.61501 * 254.52792 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0023 11 7 5.4865 -2.6366 0.0035 12 6 6.1604 -3.8037 0.0041 13 8 5.5540 -4.8540 0.0042 14 6 7.6674 -3.8037 0.0047 15 1 8.1375 -2.9913 0.5589 16 6 8.3746 -4.2996 -1.2591 17 6 8.3739 -5.1609 0.0055 18 1 7.7486 -6.0538 0.0059 19 6 9.6861 -5.2738 0.7841 20 6 10.3199 -6.6736 0.7233 21 6 10.6742 -6.4916 2.2087 22 6 9.4899 -5.5140 2.2903 23 1 -0.4850 0.8400 0.0004 24 1 3.8744 -0.6800 0.8911 25 1 3.8752 -0.6804 -0.8889 26 1 3.6585 -3.1509 -0.8875 27 1 3.6578 -3.1498 0.8925 28 1 5.9715 -1.7965 0.0038 29 1 9.3100 -3.8134 -1.5364 30 1 7.7499 -4.6261 -2.0904 31 1 10.3841 -4.4682 0.5563 32 1 11.1909 -6.7306 0.0705 33 1 9.6010 -7.4723 0.5406 34 1 10.5371 -7.3943 2.8040 35 1 11.6427 -6.0188 2.3717 36 1 8.5431 -5.9947 2.5362 37 1 9.6910 -4.6348 2.9025 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567990932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:08 Heat of formation + Delta-G solvation = -33.993462 kcal Electronic energy + Delta-G solvation = -16143.800672 eV Core-core repulsion = 13499.842736 eV Total energy + Delta-G solvation = -2643.957936 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.14661 -39.68038 -37.00267 -36.30680 -34.80316 -32.09008 -27.85659 -26.70348 -26.43112 -24.52784 -22.62154 -22.05375 -20.97526 -20.34236 -19.02313 -18.22114 -16.91934 -16.55540 -16.33150 -16.18594 -15.95841 -15.16651 -14.92894 -14.61789 -14.17919 -13.53444 -13.37320 -13.28221 -13.22043 -13.07311 -12.68579 -12.24868 -12.18644 -11.89586 -11.77376 -11.54370 -11.50972 -11.37542 -10.93458 -10.82638 -10.80469 -10.62011 -10.07375 -8.31767 -6.39593 1.38306 1.41261 1.50131 1.52644 2.20869 2.35862 2.84055 3.03206 3.61992 3.69428 3.74962 3.94912 4.00510 4.13459 4.26764 4.28945 4.34975 4.39199 4.48047 4.71415 4.82681 4.90353 4.91900 4.93429 5.05640 5.12843 5.13934 5.15508 5.27151 5.37362 5.40919 5.43131 5.62580 5.69403 6.20097 6.60382 6.69343 7.24920 7.28325 8.85224 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.050777 B = 0.003852 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.294180 B = 7267.639696 C = 7362.689852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.236 1.236 7 C -0.542 4.542 8 H 0.027 0.973 9 C -0.011 4.011 10 C 0.144 3.856 11 N -0.712 5.712 12 C 0.529 3.471 13 O -0.597 6.597 14 C -0.190 4.190 15 H 0.151 0.849 16 C -0.132 4.132 17 C -0.110 4.110 18 H 0.087 0.913 19 C -0.075 4.075 20 C -0.133 4.133 21 C -0.139 4.139 22 C -0.143 4.143 23 H 0.269 0.731 24 H 0.038 0.962 25 H 0.037 0.963 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.415 0.585 29 H 0.137 0.863 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.694 -5.834 1.143 27.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.159 1.159 7 C -0.580 4.580 8 H 0.045 0.955 9 C -0.049 4.049 10 C 0.020 3.980 11 N -0.363 5.363 12 C 0.318 3.682 13 O -0.478 6.478 14 C -0.210 4.210 15 H 0.169 0.831 16 C -0.169 4.169 17 C -0.129 4.129 18 H 0.106 0.894 19 C -0.093 4.093 20 C -0.171 4.171 21 C -0.176 4.176 22 C -0.180 4.180 23 H 0.077 0.923 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.252 0.748 29 H 0.155 0.845 30 H 0.103 0.897 31 H 0.130 0.870 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 26.092 -6.460 1.149 26.905 hybrid contribution -0.862 0.787 0.025 1.167 sum 25.231 -5.673 1.174 25.887 Atomic orbital electron populations 1.70075 1.08636 1.28518 1.51873 1.26111 0.95719 1.03973 0.93557 0.85509 0.79647 0.77137 0.79405 1.18880 1.21149 1.15932 1.21264 0.91636 0.93369 1.51778 0.95489 1.19641 0.94397 0.92736 0.98123 1.21027 0.78775 0.98531 0.99696 1.46018 1.07167 1.09165 1.73959 1.20485 0.90169 0.82949 0.74610 1.90653 1.71571 1.33216 1.52396 1.22275 0.88801 1.02599 1.07364 0.83122 1.23152 1.02142 1.01539 0.90111 1.22355 0.97796 0.92639 1.00122 0.89447 1.22215 0.93664 0.99081 0.94364 1.22910 1.00699 0.96214 0.97243 1.22837 0.98610 0.99555 0.96585 1.22924 0.98650 1.00147 0.96300 0.92258 0.94416 0.94519 0.94048 0.94083 0.74837 0.84495 0.89681 0.86982 0.90123 0.91057 0.91570 0.88756 0.91885 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 2 C 0.00 0.20 5.47 84.66 0.46 0.67 16 3 Si 0.96 42.44 27.47 68.60 1.88 44.32 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 7 C -0.54 -31.45 9.66 25.60 0.25 -31.20 16 8 H 0.03 1.76 7.99 -2.91 -0.02 1.73 16 9 C -0.01 -0.51 4.16 29.85 0.12 -0.38 16 10 C 0.14 6.08 5.61 86.38 0.48 6.56 16 11 N -0.71 -23.20 5.56 -463.06 -2.57 -25.77 16 12 C 0.53 17.48 7.61 87.66 0.67 18.14 16 13 O -0.60 -25.48 16.26 -3.03 -0.05 -25.53 16 14 C -0.19 -4.14 5.91 -11.51 -0.07 -4.20 16 15 H 0.15 2.39 8.14 -2.39 -0.02 2.37 16 16 C -0.13 -2.35 9.95 30.62 0.30 -2.05 16 17 C -0.11 -2.26 4.92 -10.79 -0.05 -2.32 16 18 H 0.09 2.34 7.67 -2.38 -0.02 2.32 16 19 C -0.08 -1.11 3.81 -10.27 -0.04 -1.15 16 20 C -0.13 -1.82 7.64 31.12 0.24 -1.58 16 21 C -0.14 -1.77 8.08 31.12 0.25 -1.52 16 22 C -0.14 -2.29 7.64 31.12 0.24 -2.06 16 23 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 24 H 0.04 1.60 7.20 -2.39 -0.02 1.58 16 25 H 0.04 1.53 7.57 -2.39 -0.02 1.52 16 26 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.41 10.42 8.47 -92.71 -0.79 9.64 16 29 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.11 1.22 8.13 -2.39 -0.02 1.20 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 1.13 8.10 -2.39 -0.02 1.12 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 36 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -72.78 309.28 2.62 -70.16 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.20 Total: 17.41 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 2.86 Total: -21.08 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -2.27 Total: -85.28 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.05 Total: -25.53 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.88 Total: 44.32 kcal Total: -72.78 2.62 -70.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567990932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.166 kcal (2) G-P(sol) polarization free energy of solvation -72.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds