Wall clock time and date at job start Mon Mar 30 2020 17:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34794 * 119.85080 * 2 1 4 4 N 1.30457 * 121.70361 * 179.69774 * 3 2 1 5 5 C 1.34227 * 121.29103 * 0.57945 * 4 3 2 6 6 N 1.37996 * 120.23564 * 179.68734 * 5 4 3 7 7 C 1.46502 * 119.99568 * 0.02742 * 6 5 4 8 8 C 1.53000 * 109.46609 * 179.97438 * 7 6 5 9 9 C 1.53009 * 109.46736 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46863 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00369 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99810 * 180.02562 * 10 9 8 13 13 N 1.31522 * 120.00129 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00102 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46829 * 59.99853 * 14 12 10 16 16 H 1.48496 * 109.46919 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47128 * 300.00069 * 14 12 10 18 18 C 1.38499 * 119.53676 * 359.71125 * 5 4 3 19 19 C 1.34941 * 119.85253 * 180.26685 * 2 1 3 20 20 O 1.22084 * 120.62813 * 0.03030 * 19 2 1 21 21 H 1.09002 * 109.47391 * 269.72745 * 1 2 3 22 22 H 1.09001 * 109.46813 * 149.72802 * 1 2 3 23 23 H 1.09004 * 109.47041 * 29.72929 * 1 2 3 24 24 H 1.08004 * 119.14478 * 359.97438 * 3 2 1 25 25 H 0.97001 * 119.99917 * 180.02562 * 6 5 4 26 26 H 1.09005 * 109.46872 * 299.99519 * 7 6 5 27 27 H 1.08997 * 109.47501 * 59.99785 * 7 6 5 28 28 H 1.08992 * 109.47387 * 299.99719 * 8 7 6 29 29 H 1.09001 * 109.47329 * 60.00588 * 8 7 6 30 30 H 1.09005 * 109.47030 * 300.00098 * 9 8 7 31 31 H 1.08997 * 109.47215 * 60.00287 * 9 8 7 32 32 H 0.97000 * 119.99845 * 180.02562 * 13 12 10 33 33 H 1.08009 * 120.78297 * 179.97438 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1359 1.1691 0.0000 4 7 3.4398 1.2113 0.0059 5 6 4.1737 0.0874 0.0006 6 7 5.5519 0.1575 0.0004 7 6 6.2189 1.4618 0.0067 8 6 7.7354 1.2590 0.0058 9 6 8.4321 2.6212 0.0117 10 6 9.9258 2.4214 0.0102 11 1 10.3371 1.4228 0.0059 12 6 10.7674 3.5136 0.0153 13 7 10.2666 4.7297 0.0211 14 14 12.6189 3.2660 0.0142 15 1 13.0167 2.5122 -1.2019 16 1 13.2950 4.5881 0.0198 17 1 13.0168 2.5009 1.2231 18 6 3.5381 -1.1431 -0.0053 19 6 2.1367 -1.1703 -0.0055 20 8 1.5352 -2.2327 -0.0110 21 1 -0.3634 -0.0049 1.0276 22 1 -0.3633 -0.8876 -0.5181 23 1 -0.3633 0.8924 -0.5096 24 1 1.5796 2.0948 -0.0004 25 1 6.0789 -0.6568 -0.0038 26 1 5.9266 2.0237 -0.8805 27 1 5.9272 2.0149 0.8995 28 1 8.0274 0.6973 0.8931 29 1 8.0275 0.7058 -0.8869 30 1 8.1401 3.1825 -0.8759 31 1 8.1402 3.1748 0.9041 32 1 10.8587 5.4980 0.0243 33 1 4.1089 -2.0600 -0.0100 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580095184.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:20 Heat of formation + Delta-G solvation = -4.380300 kcal Electronic energy + Delta-G solvation = -15815.359656 eV Core-core repulsion = 13069.145500 eV Total energy + Delta-G solvation = -2746.214156 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.61235 -38.01142 -36.66039 -34.72574 -33.24063 -31.56983 -30.15865 -27.73504 -26.22817 -24.72478 -23.27827 -22.07926 -20.49195 -18.15184 -17.76862 -17.09696 -16.37285 -16.34275 -15.19310 -14.89513 -14.77491 -14.46095 -13.93310 -13.51607 -13.41630 -13.12464 -12.87031 -12.32414 -12.04743 -11.85180 -11.02757 -10.78871 -10.72293 -10.64123 -10.10130 -10.07094 -9.85754 -9.49546 -9.17619 -8.98655 -8.40064 -7.74237 -6.05190 -4.08256 0.81040 2.06509 2.46078 3.21851 3.30427 3.35096 3.37544 3.76282 4.06302 4.41939 4.53633 4.64455 4.97248 5.15910 5.30757 5.33571 5.54872 5.65929 5.71875 5.80695 6.04662 6.10381 6.54369 6.61463 6.64130 6.91719 7.14018 7.36318 7.58860 7.71271 7.93194 7.98932 8.05192 8.34622 8.98021 9.56175 11.06023 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.071662 B = 0.003629 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.630784 B = 7713.914732 C = 8073.493817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.541 5.541 3 C 0.403 3.597 4 N -0.560 5.560 5 C 0.452 3.548 6 N -0.696 5.696 7 C 0.121 3.879 8 C -0.124 4.124 9 C 0.026 3.974 10 C -0.524 4.524 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.413 4.413 19 C 0.534 3.466 20 O -0.566 6.566 21 H 0.075 0.925 22 H 0.092 0.908 23 H 0.086 0.914 24 H 0.206 0.794 25 H 0.413 0.587 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.262 0.738 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.862 -5.223 -0.112 18.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.261 5.261 3 C 0.115 3.885 4 N -0.287 5.287 5 C 0.224 3.776 6 N -0.321 5.321 7 C -0.002 4.002 8 C -0.162 4.162 9 C -0.011 4.011 10 C -0.563 4.563 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.445 4.445 19 C 0.339 3.661 20 O -0.448 6.448 21 H 0.094 0.906 22 H 0.111 0.889 23 H 0.105 0.895 24 H 0.222 0.778 25 H 0.250 0.750 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.488 -4.884 -0.104 18.158 hybrid contribution 0.956 -0.973 0.011 1.364 sum -16.532 -5.857 -0.093 17.539 Atomic orbital electron populations 1.22095 0.77273 1.04945 1.03875 1.46688 1.10201 1.08416 1.60772 1.24666 0.88455 0.89956 0.85425 1.67970 1.04340 1.29623 1.26739 1.18522 0.85690 0.88582 0.84776 1.44910 1.01572 1.10773 1.74894 1.21737 0.93593 0.82714 1.02129 1.21923 0.90941 1.02383 1.00977 1.19006 0.94645 0.89862 0.97624 1.21174 0.91406 0.92571 1.51112 0.92704 1.25019 0.98926 0.95237 0.95197 1.69951 1.35166 0.97722 1.50480 0.86637 0.85342 0.77270 0.78638 1.20227 1.21240 1.20223 1.21824 0.92915 0.97797 1.31972 1.16620 0.88384 0.82579 0.78543 1.90909 1.70493 1.28417 1.54985 0.90633 0.88932 0.89528 0.77777 0.75048 0.91525 0.91536 0.92702 0.92703 0.96254 0.96255 0.92851 0.83882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.39 59.85 0.62 1.00 16 2 N -0.54 -5.53 2.97 -128.86 -0.38 -5.91 16 3 C 0.40 3.59 11.46 -90.64 -1.04 2.55 16 4 N -0.56 -7.19 9.63 -13.55 -0.13 -7.32 16 5 C 0.45 6.43 7.48 -154.64 -1.16 5.28 16 6 N -0.70 -9.91 5.67 -60.42 -0.34 -10.25 16 7 C 0.12 1.98 5.70 -4.04 -0.02 1.95 16 8 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 9 C 0.03 0.65 4.97 -27.88 -0.14 0.51 16 10 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 11 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 14 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.41 -6.03 9.94 -38.76 -0.39 -6.42 16 19 C 0.53 7.89 7.42 -15.46 -0.11 7.77 16 20 O -0.57 -10.13 16.75 4.84 0.08 -10.05 16 21 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.09 0.72 7.44 -51.93 -0.39 0.33 16 23 H 0.09 0.21 8.00 -51.93 -0.42 -0.20 16 24 H 0.21 0.72 8.01 -52.48 -0.42 0.30 16 25 H 0.41 5.19 8.47 -40.82 -0.35 4.85 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.14 2.04 8.06 -52.48 -0.42 1.61 16 LS Contribution 289.37 15.07 4.36 4.36 Total: -1.00 -34.59 289.37 -7.98 -42.57 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -4.49 Total: -0.90 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.79 Total: -3.13 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.12 Total: -49.13 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.59 -7.98 -42.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580095184.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.185 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds