Wall clock time and date at job start Mon Mar 30 2020 17:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00218 * 2 1 4 4 H 1.48500 * 109.47024 * 270.00306 * 3 2 1 5 5 H 1.48499 * 109.47159 * 29.99649 * 3 2 1 6 6 H 1.48500 * 109.47729 * 150.00185 * 3 2 1 7 7 C 1.37876 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00002 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00320 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47241 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47081 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00180 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99940 * 179.97438 * 11 10 9 14 14 C 1.47426 * 125.64846 * 0.04821 * 13 11 10 15 15 C 1.54904 * 104.82848 * 204.09218 * 14 13 11 16 16 C 1.55406 * 101.66817 * 323.07408 * 15 14 13 17 17 C 1.47020 * 125.64360 * 180.02562 * 13 11 10 18 18 H 1.09002 * 109.88352 * 59.40885 * 17 13 11 19 19 C 1.52996 * 109.88660 * 298.39372 * 17 13 11 20 20 C 1.53002 * 117.49888 * 111.57196 * 19 17 13 21 21 C 1.53000 * 117.50107 * 180.22958 * 19 17 13 22 22 H 0.96997 * 120.00181 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47483 * 59.99394 * 9 7 2 24 24 H 1.09003 * 109.46753 * 299.99435 * 9 7 2 25 25 H 1.09004 * 109.47476 * 60.00139 * 10 9 7 26 26 H 1.08999 * 109.47565 * 300.00063 * 10 9 7 27 27 H 1.09000 * 110.36294 * 322.92643 * 14 13 11 28 28 H 1.08993 * 110.36776 * 85.13913 * 14 13 11 29 29 H 1.09001 * 111.00856 * 81.06250 * 15 14 13 30 30 H 1.09003 * 111.00330 * 204.87634 * 15 14 13 31 31 H 1.09008 * 110.69248 * 277.05129 * 16 15 14 32 32 H 1.08994 * 110.85628 * 153.70253 * 16 15 14 33 33 H 1.09002 * 115.54951 * 325.90170 * 19 17 13 34 34 H 1.09000 * 117.49996 * 215.00804 * 20 19 17 35 35 H 1.08999 * 117.49664 * 0.02562 * 20 19 17 36 36 H 1.09008 * 117.49673 * 359.97438 * 21 19 17 37 37 H 1.08999 * 117.49942 * 144.97366 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5285 -2.6366 -0.0001 12 8 6.1349 -1.5863 0.0004 13 7 6.2024 -3.8038 0.0003 14 6 5.5945 -5.1469 -0.0002 15 6 6.6759 -6.0718 0.6118 16 6 7.9798 -5.4591 0.0291 17 6 7.6654 -3.9485 0.0008 18 1 8.0854 -3.4657 0.8833 19 6 8.2511 -3.3190 -1.2647 20 6 9.0895 -2.0498 -1.0995 21 6 9.7693 -3.3770 -1.4451 22 1 -0.4850 0.8400 0.0004 23 1 3.8746 -0.6808 0.8904 24 1 3.8752 -0.6797 -0.8895 25 1 3.6585 -3.1503 -0.8903 26 1 3.6578 -3.1507 0.8896 27 1 4.6948 -5.1563 0.6152 28 1 5.3599 -5.4568 -1.0185 29 1 6.6709 -6.0120 1.7001 30 1 6.5437 -7.1012 0.2786 31 1 8.1651 -5.8337 -0.9776 32 1 8.8295 -5.6638 0.6804 33 1 7.6344 -3.4019 -2.1597 34 1 9.0243 -1.2977 -1.8858 35 1 9.2241 -1.6636 -0.0892 36 1 10.3510 -3.8633 -0.6619 37 1 10.1514 -3.4985 -2.4587 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589699068.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:32 Heat of formation + Delta-G solvation = -42.232306 kcal Electronic energy + Delta-G solvation = -17024.097358 eV Core-core repulsion = 14379.782159 eV Total energy + Delta-G solvation = -2644.315199 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.23896 -38.93702 -37.12265 -35.56703 -33.44865 -32.36323 -29.91993 -28.00841 -24.93243 -23.39211 -23.11750 -22.40857 -21.21571 -19.92556 -19.13486 -17.92666 -17.25540 -16.59128 -16.25746 -15.99493 -15.57961 -14.97490 -14.72163 -14.43315 -14.29350 -13.80640 -13.59158 -13.26741 -13.08934 -12.90749 -12.45919 -12.27385 -12.24054 -12.01065 -11.92619 -11.80551 -11.54270 -11.42371 -11.33213 -10.90078 -10.80459 -10.59729 -9.61178 -8.33941 -6.36765 1.30416 1.32211 1.47824 1.69241 2.03403 2.32708 2.89882 3.01587 3.59302 3.66697 3.76325 3.97480 4.11656 4.13050 4.21488 4.30998 4.35924 4.43263 4.50034 4.65437 4.76155 4.82604 4.94251 4.98481 5.00574 5.07420 5.13321 5.20039 5.24825 5.29740 5.40571 5.41295 5.55068 5.58436 6.21289 6.55499 6.69089 7.26617 7.28624 8.81841 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032241 B = 0.006026 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.249277 B = 4645.343915 C = 5367.626112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.016 3.984 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.008 3.992 10 C -0.109 4.109 11 C 0.523 3.477 12 O -0.576 6.576 13 N -0.619 5.619 14 C 0.086 3.914 15 C -0.123 4.123 16 C -0.112 4.112 17 C 0.159 3.841 18 H 0.055 0.945 19 C -0.167 4.167 20 C -0.187 4.187 21 C -0.141 4.141 22 H 0.268 0.732 23 H 0.008 0.992 24 H 0.006 0.994 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.414 -15.006 -0.764 24.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.181 4.181 3 Si 0.761 3.239 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.068 0.932 9 C -0.030 4.030 10 C -0.149 4.149 11 C 0.313 3.687 12 O -0.455 6.455 13 N -0.353 5.353 14 C -0.035 4.035 15 C -0.161 4.161 16 C -0.150 4.150 17 C 0.056 3.944 18 H 0.073 0.927 19 C -0.187 4.187 20 C -0.225 4.225 21 C -0.179 4.179 22 H 0.077 0.923 23 H 0.027 0.973 24 H 0.025 0.975 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.131 0.869 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.132 0.868 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 19.526 -14.274 -0.755 24.199 hybrid contribution -0.363 1.352 -0.081 1.403 sum 19.163 -12.922 -0.836 23.128 Atomic orbital electron populations 1.70012 1.07697 1.28133 1.52415 1.25762 0.95478 1.02705 0.94193 0.85854 0.79207 0.79658 0.79149 1.19392 1.20055 1.18847 1.21403 0.91088 0.93763 1.50457 0.93150 1.19198 0.94052 0.93574 0.96175 1.21443 0.89335 0.99786 1.04323 1.20885 0.90609 0.82347 0.74858 1.90632 1.71169 1.32397 1.51337 1.48728 1.07283 1.06197 1.73069 1.22652 0.98025 0.80658 1.02215 1.22842 0.92692 0.99654 1.00924 1.22706 0.98874 0.90001 1.03433 1.21286 0.79827 0.98097 0.95161 0.92671 1.22508 0.94637 1.02476 0.99041 1.22844 1.05761 0.91938 1.01908 1.23040 0.92413 0.98545 1.03859 0.92296 0.97338 0.97524 0.88646 0.88498 0.90067 0.90260 0.90452 0.86926 0.89050 0.88157 0.89577 0.90277 0.90202 0.86839 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.71 13.96 21.45 0.30 -59.41 16 2 C 0.02 1.00 5.47 84.66 0.46 1.46 16 3 Si 0.94 47.85 27.47 68.60 1.88 49.73 16 4 H -0.27 -13.29 7.11 99.48 0.71 -12.59 16 5 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 6 H -0.26 -13.53 6.54 99.48 0.65 -12.88 16 7 C -0.53 -31.32 9.66 25.60 0.25 -31.08 16 8 H 0.05 3.12 7.99 -2.91 -0.02 3.10 16 9 C 0.01 0.41 3.33 29.85 0.10 0.51 16 10 C -0.11 -4.44 4.65 29.85 0.14 -4.30 16 11 C 0.52 20.27 7.64 87.66 0.67 20.94 16 12 O -0.58 -26.87 15.67 -3.03 -0.05 -26.92 16 13 N -0.62 -17.69 3.07 -788.07 -2.42 -20.11 16 14 C 0.09 1.70 6.69 86.85 0.58 2.28 16 15 C -0.12 -1.57 7.09 32.07 0.23 -1.34 16 16 C -0.11 -1.54 6.23 31.87 0.20 -1.34 16 17 C 0.16 3.78 3.04 45.34 0.14 3.91 16 18 H 0.06 1.48 7.93 -2.39 -0.02 1.46 16 19 C -0.17 -4.14 4.54 -10.79 -0.05 -4.18 16 20 C -0.19 -4.94 10.02 30.62 0.31 -4.63 16 21 C -0.14 -2.52 9.95 30.62 0.30 -2.21 16 22 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 23 H 0.01 0.45 7.16 -2.39 -0.02 0.43 16 24 H 0.01 0.34 7.53 -2.39 -0.02 0.33 16 25 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 26 H 0.10 3.63 7.85 -2.39 -0.02 3.61 16 27 H 0.08 1.60 7.48 -2.39 -0.02 1.58 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.09 1.08 7.85 -2.38 -0.02 1.06 16 32 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.08 2.28 8.06 -2.39 -0.02 2.26 16 36 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -74.51 302.67 4.01 -70.50 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 0.97 Total: 6.17 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 3.33 Total: -19.97 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -2.12 Total: -79.51 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.92 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.88 Total: 49.73 kcal Total: -74.51 4.01 -70.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589699068.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.267 kcal (2) G-P(sol) polarization free energy of solvation -74.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds