Wall clock time and date at job start Mon Mar 30 2020 17:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00090 * 2 1 4 4 H 1.48500 * 109.47205 * 269.99936 * 3 2 1 5 5 H 1.48499 * 109.47358 * 30.00310 * 3 2 1 6 6 H 1.48506 * 109.47096 * 150.00069 * 3 2 1 7 7 C 1.37875 * 119.99403 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99506 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00589 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47199 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.46885 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99790 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99681 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99688 * 179.97438 * 13 11 10 15 15 H 1.08994 * 112.84345 * 314.87948 * 14 13 11 16 16 C 1.53788 * 113.68002 * 183.63348 * 14 13 11 17 17 C 1.53489 * 87.06858 * 219.40620 * 16 14 13 18 18 H 1.08997 * 115.59019 * 268.28006 * 17 16 14 19 19 C 1.53678 * 114.17623 * 131.23051 * 17 16 14 20 20 C 1.53871 * 106.22545 * 294.29795 * 19 17 16 21 21 C 1.53477 * 107.07054 * 342.15141 * 20 19 17 22 22 C 1.53737 * 107.48726 * 0.77566 * 21 20 19 23 23 H 1.08999 * 114.87156 * 245.39243 * 22 21 20 24 24 H 0.97002 * 119.99947 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47025 * 60.00136 * 9 7 2 26 26 H 1.08997 * 109.47418 * 300.00183 * 9 7 2 27 27 H 1.09000 * 109.47131 * 60.00653 * 10 9 7 28 28 H 1.08994 * 109.47522 * 300.00024 * 10 9 7 29 29 H 0.96995 * 120.00114 * 0.02562 * 13 11 10 30 30 H 1.08996 * 113.61539 * 333.95525 * 16 14 13 31 31 H 1.09002 * 113.61351 * 104.77419 * 16 14 13 32 32 H 1.08996 * 110.10016 * 53.41607 * 19 17 16 33 33 H 1.08999 * 110.10296 * 174.97644 * 19 17 16 34 34 H 1.09004 * 109.93306 * 222.81409 * 20 19 17 35 35 H 1.09005 * 109.99401 * 101.52471 * 20 19 17 36 36 H 1.08991 * 109.86335 * 241.26367 * 21 20 19 37 37 H 1.08996 * 109.86401 * 120.28848 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4915 -4.9672 -0.0025 12 8 0.2787 -4.9671 -0.0024 13 7 2.1654 -6.1344 -0.0031 14 6 1.4328 -7.4031 -0.0031 15 1 0.6077 -7.4153 0.7090 16 6 2.3412 -8.6409 0.0854 17 6 1.3943 -9.3102 -0.9203 18 1 0.5769 -9.8858 -0.4860 19 6 2.1066 -9.9789 -2.1065 20 6 2.7674 -8.8430 -2.9070 21 6 2.0884 -7.5352 -2.4778 22 6 1.0396 -7.8879 -1.4105 23 1 0.0063 -7.7051 -1.7051 24 1 -0.4850 0.8401 -0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5572 0.8896 27 1 2.8724 -3.6048 0.8878 28 1 2.8711 -3.6040 -0.8922 29 1 3.1353 -6.1344 -0.0028 30 1 3.3454 -8.4743 -0.3045 31 1 2.3415 -9.1129 1.0679 32 1 2.8661 -10.6720 -1.7450 33 1 1.3836 -10.5067 -2.7284 34 1 2.6184 -9.0052 -3.9746 35 1 3.8329 -8.7990 -2.6815 36 1 1.6020 -7.0715 -3.3359 37 1 2.8287 -6.8537 -2.0588 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889611450.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:18 Heat of formation + Delta-G solvation = -40.101602 kcal Electronic energy + Delta-G solvation = -16798.684818 eV Core-core repulsion = 14154.462014 eV Total energy + Delta-G solvation = -2644.222805 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.89168 -38.48404 -34.08768 -33.40195 -31.93024 -30.75193 -28.85276 -25.98518 -25.23278 -23.20985 -21.58870 -20.20327 -19.37209 -18.54332 -16.86679 -16.56433 -15.63688 -15.51592 -15.13289 -14.63794 -14.39141 -13.86330 -13.11695 -13.10630 -12.63986 -12.26011 -12.16693 -11.73157 -11.35426 -11.16933 -11.12169 -10.99619 -10.91454 -10.65643 -10.54129 -10.43451 -10.14341 -9.91954 -9.62422 -9.12418 -8.91848 -8.64686 -8.29386 -5.93685 -3.97981 3.31965 3.34839 3.40631 3.43286 3.65655 4.20726 4.44631 4.48960 4.52371 4.65009 4.99123 5.13870 5.24263 5.41185 5.43938 5.49400 5.57673 5.59238 5.66920 5.72596 5.81196 5.93691 6.01433 6.05417 6.18796 6.27107 6.27976 6.30832 6.42699 6.86601 6.94135 7.77211 7.90058 7.98283 8.10412 8.41942 8.87240 9.11069 9.65408 11.17315 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.053646 B = 0.004408 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.819419 B = 6350.389260 C = 6477.057932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.131 4.131 11 C 0.510 3.490 12 O -0.534 6.534 13 N -0.733 5.733 14 C 0.133 3.867 15 H 0.100 0.900 16 C -0.133 4.133 17 C -0.114 4.114 18 H 0.098 0.902 19 C -0.110 4.110 20 C -0.121 4.121 21 C -0.107 4.107 22 C -0.123 4.123 23 H 0.086 0.914 24 H 0.260 0.740 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.396 0.604 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.138 -19.816 -2.698 21.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.171 4.171 11 C 0.298 3.702 12 O -0.409 6.409 13 N -0.386 5.386 14 C 0.027 3.973 15 H 0.118 0.882 16 C -0.171 4.171 17 C -0.132 4.132 18 H 0.116 0.884 19 C -0.148 4.148 20 C -0.159 4.159 21 C -0.145 4.145 22 C -0.142 4.142 23 H 0.104 0.896 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.230 0.770 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.088 -19.663 -2.689 20.759 hybrid contribution 0.877 0.930 -0.029 1.278 sum 6.965 -18.733 -2.718 20.170 Atomic orbital electron populations 1.70004 1.06056 1.26536 1.50277 1.25025 0.94817 0.99204 0.95338 0.86596 0.79775 0.83549 0.78050 1.20687 1.21231 1.19896 1.21235 0.92913 0.91067 1.51283 0.92646 1.18888 0.93186 0.89393 0.98575 1.21865 1.00699 0.92197 1.02328 1.21534 0.88682 0.85676 0.74281 1.90658 1.14497 1.87664 1.48057 1.46206 1.09643 1.05409 1.77373 1.22382 0.95559 0.82332 0.97007 0.88210 1.23162 0.98604 0.95847 0.99481 1.22989 0.98501 0.95580 0.96175 0.88391 1.21919 0.99230 0.97575 0.96047 1.22026 0.99536 0.94624 0.99725 1.21740 0.97673 0.97226 0.97887 1.23545 0.99830 0.95407 0.95466 0.89559 0.92979 0.95868 0.95864 0.90372 0.90407 0.77030 0.89528 0.91016 0.91871 0.91775 0.91959 0.92068 0.91930 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.75 13.29 55.43 0.74 -27.02 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -15.14 9.11 -34.44 -0.31 -15.45 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.70 5.64 -27.88 -0.16 -2.86 16 11 C 0.51 9.96 7.83 -10.98 -0.09 9.88 16 12 O -0.53 -12.83 15.90 5.56 0.09 -12.74 16 13 N -0.73 -10.41 4.02 -52.93 -0.21 -10.62 16 14 C 0.13 1.69 3.77 -67.02 -0.25 1.44 16 15 H 0.10 1.43 8.02 -51.93 -0.42 1.02 16 16 C -0.13 -1.23 6.99 -26.07 -0.18 -1.41 16 17 C -0.11 -1.06 4.87 -89.19 -0.43 -1.50 16 18 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 19 C -0.11 -0.91 6.41 -25.93 -0.17 -1.08 16 20 C -0.12 -1.09 6.28 -26.03 -0.16 -1.25 16 21 C -0.11 -1.23 5.84 -26.10 -0.15 -1.38 16 22 C -0.12 -1.49 5.00 -88.92 -0.44 -1.94 16 23 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 29 H 0.40 4.45 8.43 -40.82 -0.34 4.11 16 30 H 0.09 0.74 7.43 -51.93 -0.39 0.35 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.83 6.53 -51.93 -0.34 0.49 16 LS Contribution 299.61 15.07 4.52 4.52 Total: -1.00 -33.55 299.61 -8.56 -42.11 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.10 Total: -0.02 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -2.57 Total: -13.06 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.52 Total: -37.64 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.55 -8.56 -42.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889611450.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.009 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds